NO11G01120.1, NO11G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01120.1
Unique NameNO11G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2804
Alignment locationchr11:406988..409947 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:406988..409947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G01120.1 vs.
Match: EWM25094.1 (hypothetical protein Naga_100016g27 [Nannochloropsis gaditana])

HSP 1 Score: 394.8 bits (1013), Expect = 3.700e-106
Identity = 263/474 (55.49%), Postives = 319/474 (67.30%), Query Frame = 0
Query:    1 MHNTVTLARVSLRDNLLCVCDMRGVIVFASDDLLWALGLPGPTIRHIGSSVLDLLTDEDKLEYKNAMRRKSGSLLRCQQNGCFVWLDIQSTGQTS-RLKRALHRVENARATCSSITPPASHSECNNNHNHQEPYSTSSSNTSGTNNNSPLNYQVKALATASYPCAGGAGRIAGLEEHVMTKEQTLDWFLYTREQGEGMDELADDENDDDGDDTATDGSDSDGDEGDDVRLARPTPTAPGHTMEPVTMPSLGGLFLHESGSESN--------SACTTSNSVCSSEQLSGAGAAGWTEEEQQRQQEEEAAMVREYSFREIFEYFSAGAKVMSQSTSFSRGGSRVPSVLNFGSAAAAVAAAAVAPSPPAAGLVRPMLSQRDSRPFSERVAAKCRAAPEESYSASNYSFAPVVSSSSSASSSSWLLQNKYKVSGYVGKAAATLGLGTVVSSTVSAACPSLMTAPAMLEESGWDWYVDV 466
            M++ V LARVSLRDNLLCVCD++GVIVFASDDLLWALGL GPT RHIG+S+ DLL DED  EYKN++RRKSGSLLRC+QNGCFVWLDIQ       +LKRAL RV+ ARA         +++  + N N     + + +  +   NNSPLN+Q KALA+AS  CA  AG + GLEE+V+TK++TLD FL    Q E       D+   + +D  T+ SD + +EG  +   R  P A    + P  +PS G L L +  ++          +ACTTS+SV SSEQL G G A WT+EEQ RQQ+EEAAMVREYSFREIFEY SAGAK MS +TSFS  GSR  S LN G      + AA +PS PAA L +P    RDSRPFSERVAAKCRAAPEES+ +S+           ++ SSSW LQNKYKVSGY+GKAAATLGLGTV S+ V A+  +L   P ML+ESGWDWYVDV
Sbjct:    8 MNSNVLLARVSLRDNLLCVCDLKGVIVFASDDLLWALGLQGPTTRHIGASLFDLLADEDVEEYKNSLRRKSGSLLRCKQNGCFVWLDIQCVSHVPPQLKRALSRVQKARAAGFPSLVCLNNNSISENVNLIADINRAVAPHA--MNNSPLNHQSKALASAS--CAWAAGNVVGLEENVLTKDRTLDSFLTPAGQEEESATRPADKAVGE-EDAVTEASDPE-EEG--IYATRAEPQASVGAINPC-LPSFGCLTLEDGANQGQRATRSLCTTACTTSSSVSSSEQL-GDGLALWTDEEQLRQQQEEAAMVREYSFREIFEYLSAGAKSMSHATSFSLSGSRASSTLNMGP-----STAAASPSSPAAVLAQPC---RDSRPFSERVAAKCRAAPEESFLSSH---------GLASGSSSWRLQNKYKVSGYMGKAAATLGLGTVKSAAVGAS--ALRHVPPMLDESGWDWYVDV 452          
The following BLAST results are available for this feature:
BLAST of NO11G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25094.13.700e-10655.49hypothetical protein Naga_100016g27 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01120NO11G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01120.1NO11G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01120.1.cds1NO11G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01120.1.cds2NO11G01120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01120.1 ID=NO11G01120.1|Name=NO11G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2804bp
GTTCAGCATGAGAGAATCAGAAGGATAAAGGAATGTTTGCGGATGCGCGC
TAGTGTTGTTTCTCTTTCTCTATTCCACCACTCTGTCCAATCACTGCCCT
GGGCGTCCTGAATTGGGTCATGTTTTTTTTCTGCATCATGACCGCGCTCG
CACATCGACGTGTGGCCTGCATTCAACTGCACTTACAAAGAGAAGCCAGA
ACAGTGTTGTTGATGTCAACTGCAGGCCCCAGAAATGCCCTTGCGCTTTC
GGTGGGTCCTTGCGTGCGTCATAGATTGTGCACGTGCTCTTGGCTATTGA
AATGGGGGCCCTAGGTATTTGGGTATGCTTGTGTTCTAGTCCATGCTCCT
TGTGTGCCCTGTGGCACGCACCGCCGGTGGCCTTGGTTGACACTTGACAC
TAAGCATCTGCTTGATCCGCTCCGCTCGTTGATTCCCTTGACACGCGCCC
GGCCTCACCCCACGCTTCCCCCGTCCCTACCACACCACGGGTCTTCATAC
ATCCTCACCAGCACTCAACAGCATGCATAATACGGTGACCCTGGCTCGCG
TGTCCCTGCGCGATAATTTGCTTTGTGTCTGCGACATGCGCGGAGTGATT
GTCTTCGCTTCAGACGACCTCCTGTGGGCCTTGGGACTTCCGGGCCCGAC
CATTCGGCACATTGGCTCCAGCGTCCTAGACTTGTTGACCGACGAGGACA
AACTTGAGTACAAGAACGCCATGAGAAGGAAATCGGGCTCGCTTTTGCGA
TGCCAGCAGAATGGATGTTTCGTGTGGCTTGACATCCAGTCAACGGGCCA
GACCAGCCGGCTCAAGAGAGCATTGCACCGCGTGGAAAATGCACGGGCCA
CCTGCAGCTCCATTACCCCCCCCGCCAGTCACAGCGAGTGCAATAACAAC
CACAACCACCAGGAGCCGTATTCCACCAGCTCCTCTAATACCAGCGGCAC
CAACAACAATAGTCCTCTCAACTACCAGGTCAAGGCCTTGGCTACTGCCT
CGTATCCGTGTGCCGGCGGCGCGGGGCGCATTGCTGGTTTGGAGGAGCAT
GTTATGACCAAGGAACAAACTCTCGACTGGTTCCTCTACACCCGGGAGCA
AGGTGAAGGCATGGATGAGCTGGCGGATGACGAGAACGATGACGACGGCG
ACGACACTGCCACGGATGGAAGCGACTCGGATGGGGACGAGGGAGACGAT
GTCCGCCTCGCCCGACCAACGCCTACGGCCCCTGGTCATACGATGGAACC
CGTAACCATGCCCTCTTTGGGCGGTCTGTTTCTGCATGAGAGTGGGAGTG
AAAGCAACTCGGCCTGTACCACCTCAAATTCGGTCTGCTCCTCGGAGCAG
CTGTCAGGGGCGGGGGCCGCAGGCTGGACGGAGGAAGAGCAGCAACGCCA
GCAGGAAGAGGAGGCAGCTATGGTGCGAGAATACTCTTTTAGAGAAATTT
TTGAGTATTTCAGCGCCGGCGCGAAGGTTATGAGCCAGTCCACCAGCTTC
AGCCGTGGGGGGTCCCGTGTCCCGTCTGTCTTGAACTTCGGGTCGGCAGC
AGCTGCAGTAGCAGCAGCTGCAGTCGCGCCCAGCCCTCCTGCCGCTGGCT
TGGTCCGGCCCATGCTTTCGCAACGAGACTCTCGACCCTTCAGTGAGCGG
GTGGCAGCCAAGTGCCGCGCTGCCCCCGAGGAGAGCTACAGCGCCAGCAA
CTACAGCTTCGCCCCTGTGGTATCCTCTTCTTCCTCCGCTTCTTCCTCGT
CATGGTTATTGCAAAACAAGTACAAGGTCAGTGGGTATGTGGGCAAGGCA
GCTGCGACGCTGGGCCTTGGTACTGTTGTCAGCAGCACGGTGTCGGCTGC
GTGCCCGTCTCTGATGACGGCACCGGCGATGTTGGAGGAGAGCGGGTGGG
ATTGGTACGTGGACGTCTAGAGAGAAGGAAAGTGAGAGAGAGAGAGAGAG
TGGGTGTGTGATTGTGTAGATTGGTGTATGTGCGTATGCGACGTGCCACC
CGGCCAGCAGTCGGCGTAAGACCCATCGGGGTAAGTTGCATGTCGGACAA
AGTGAATAGAGAGATAGAGAGTAAGTGCATCGGGAACAGTAAAGGGACAC
AGCAGTATCCAGCTTCATTGAGTAGATATGAATACAAATTTACAGTGATC
GAGGGAGGAAGGAGAGTCTACACGCTTCGCATTTCTCAATGCGGCTTCCG
CATGTGTCTTCCTTTCTGCCCTGGGGCTCCCGTCACTGTGTGATATGTGC
ATAGGAATCCCATAGACAAAGAAATGAACAAGCGGAAGAGAGGAGGGCCA
GAGAAACGTAACTGGCTGATTGAACAGAGAGACCGATAAAGGTAGGACAA
GCGCTGCAGTGGCAGGCCCAAGTTCCAATGCCTTGGCACGCGGATTTTGT
GGTCGCCCGCAGCCTGCGGTCGGCTTTCTGTGTCACGATTTCCCCCCTGG
AAGAGAAGAGAGATTTGACAGACGAAGTCTTAAACCAACCACACGTACAA
TAGAAAAGGGATGACAACAAAAACAGTAACAGTAGCAACAAGCTTGTCCC
GTGCGCGTCATGGAGCGGCGAAACGGCATGAATTAATGAGAAACATGGTT
CATCCACTCTCACGATTGCCGCGCACACAGTGGAAGCTTTCTCAGGCGGA
ACACGGGACAGAGAGAGACCACCCCCTCCATAGAGTTTAGCAGGACTTGT
GGACAAAACGCCCACCATCCAACCAGAGGGTTAAGCCCAAAACAGCTATC
AACGCCAGGAGATAAGTAGGTTTCGAAGTAAACATTAACAGCACGATACA
AAAA
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protein sequence of NO11G01120.1

>NO11G01120.1-protein ID=NO11G01120.1-protein|Name=NO11G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MHNTVTLARVSLRDNLLCVCDMRGVIVFASDDLLWALGLPGPTIRHIGSS
VLDLLTDEDKLEYKNAMRRKSGSLLRCQQNGCFVWLDIQSTGQTSRLKRA
LHRVENARATCSSITPPASHSECNNNHNHQEPYSTSSSNTSGTNNNSPLN
YQVKALATASYPCAGGAGRIAGLEEHVMTKEQTLDWFLYTREQGEGMDEL
ADDENDDDGDDTATDGSDSDGDEGDDVRLARPTPTAPGHTMEPVTMPSLG
GLFLHESGSESNSACTTSNSVCSSEQLSGAGAAGWTEEEQQRQQEEEAAM
VREYSFREIFEYFSAGAKVMSQSTSFSRGGSRVPSVLNFGSAAAAVAAAA
VAPSPPAAGLVRPMLSQRDSRPFSERVAAKCRAAPEESYSASNYSFAPVV
SSSSSASSSSWLLQNKYKVSGYVGKAAATLGLGTVVSSTVSAACPSLMTA
PAMLEESGWDWYVDV*
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mRNA from alignment at chr11:406988..409947-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01120.1 ID=NO11G01120.1|Name=NO11G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2960bp|location=Sequence derived from alignment at chr11:406988..409947- (Nannochloropsis oceanica)
GTTCAGCATGAGAGAATCAGAAGGATAAAGGAATGTTTGCGGATGCGCGC TAGTGTTGTTTCTCTTTCTCTATTCCACCACTCTGTCCAATCACTGCCCT GGGCGTCCTGAATTGGGTCATGTTTTTTTTCTGCATCATGACCGCGCTCG CACATCGACGTGTGGCCTGCATTCAACTGCACTTACAAAGAGAAGCCAGA ACAGTGTTGTTGATGTCAACTGCAGGCCCCAGAAATGCCCTTGCGCTTTC GGTGGGTCCTTGCGTGCGTCATAGATTGTGCACGTGCTCTTGGCTATTGA AATGGGGGCCCTAGGTATTTGGGTATGCTTGTGTTCTAGTCCATGCTCCT TGTGTGCCCTGTGGCACGCACCGCCGGTGGCCTTGGTTGACACTTGACAC TAAGCATCTGCTTGATCCGCTCCGCTCGTTGATTCCCTTGACACGCGCCC GGCCTCACCCCACGCTTCCCCCGTCCCTACCACACCACGGGTCTTCATAC ATCCTCACCAGCACTCAACAGCATGCATAATACGGTGACCCTGGCTCGCG TGTCCCTGCGCGATAATTTGCTTTGTGTCTGCGACATGCGCGGAGTGATT GTCTTCGCTTCAGACGACCTCCTGTGGGCCTTGGGACTTCCGGGCCCGAC CATTCGGCACATTGGCTCCAGCGTCCTAGACTTGTTGACCGACGAGGACA AACTTGAGTACAAGGTATGTCTGGGTATGAGGGGAAAGTAGGGGAGTAAG GCGGCGGGGAATTTGCAGTGCGACACATGTATCGACCCGCTTCTTTTCGA CCACTTTGTTCTGGGTCTGGGATCTGCTGCACACATCTCATAACTCCCTT CCACTCGTATTCACCCACAGAACGCCATGAGAAGGAAATCGGGCTCGCTT TTGCGATGCCAGCAGAATGGATGTTTCGTGTGGCTTGACATCCAGTCAAC GGGCCAGACCAGCCGGCTCAAGAGAGCATTGCACCGCGTGGAAAATGCAC GGGCCACCTGCAGCTCCATTACCCCCCCCGCCAGTCACAGCGAGTGCAAT AACAACCACAACCACCAGGAGCCGTATTCCACCAGCTCCTCTAATACCAG CGGCACCAACAACAATAGTCCTCTCAACTACCAGGTCAAGGCCTTGGCTA CTGCCTCGTATCCGTGTGCCGGCGGCGCGGGGCGCATTGCTGGTTTGGAG GAGCATGTTATGACCAAGGAACAAACTCTCGACTGGTTCCTCTACACCCG GGAGCAAGGTGAAGGCATGGATGAGCTGGCGGATGACGAGAACGATGACG ACGGCGACGACACTGCCACGGATGGAAGCGACTCGGATGGGGACGAGGGA GACGATGTCCGCCTCGCCCGACCAACGCCTACGGCCCCTGGTCATACGAT GGAACCCGTAACCATGCCCTCTTTGGGCGGTCTGTTTCTGCATGAGAGTG GGAGTGAAAGCAACTCGGCCTGTACCACCTCAAATTCGGTCTGCTCCTCG GAGCAGCTGTCAGGGGCGGGGGCCGCAGGCTGGACGGAGGAAGAGCAGCA ACGCCAGCAGGAAGAGGAGGCAGCTATGGTGCGAGAATACTCTTTTAGAG AAATTTTTGAGTATTTCAGCGCCGGCGCGAAGGTTATGAGCCAGTCCACC AGCTTCAGCCGTGGGGGGTCCCGTGTCCCGTCTGTCTTGAACTTCGGGTC GGCAGCAGCTGCAGTAGCAGCAGCTGCAGTCGCGCCCAGCCCTCCTGCCG CTGGCTTGGTCCGGCCCATGCTTTCGCAACGAGACTCTCGACCCTTCAGT GAGCGGGTGGCAGCCAAGTGCCGCGCTGCCCCCGAGGAGAGCTACAGCGC CAGCAACTACAGCTTCGCCCCTGTGGTATCCTCTTCTTCCTCCGCTTCTT CCTCGTCATGGTTATTGCAAAACAAGTACAAGGTCAGTGGGTATGTGGGC AAGGCAGCTGCGACGCTGGGCCTTGGTACTGTTGTCAGCAGCACGGTGTC GGCTGCGTGCCCGTCTCTGATGACGGCACCGGCGATGTTGGAGGAGAGCG GGTGGGATTGGTACGTGGACGTCTAGAGAGAAGGAAAGTGAGAGAGAGAG AGAGAGTGGGTGTGTGATTGTGTAGATTGGTGTATGTGCGTATGCGACGT GCCACCCGGCCAGCAGTCGGCGTAAGACCCATCGGGGTAAGTTGCATGTC GGACAAAGTGAATAGAGAGATAGAGAGTAAGTGCATCGGGAACAGTAAAG GGACACAGCAGTATCCAGCTTCATTGAGTAGATATGAATACAAATTTACA GTGATCGAGGGAGGAAGGAGAGTCTACACGCTTCGCATTTCTCAATGCGG CTTCCGCATGTGTCTTCCTTTCTGCCCTGGGGCTCCCGTCACTGTGTGAT ATGTGCATAGGAATCCCATAGACAAAGAAATGAACAAGCGGAAGAGAGGA GGGCCAGAGAAACGTAACTGGCTGATTGAACAGAGAGACCGATAAAGGTA GGACAAGCGCTGCAGTGGCAGGCCCAAGTTCCAATGCCTTGGCACGCGGA TTTTGTGGTCGCCCGCAGCCTGCGGTCGGCTTTCTGTGTCACGATTTCCC CCCTGGAAGAGAAGAGAGATTTGACAGACGAAGTCTTAAACCAACCACAC GTACAATAGAAAAGGGATGACAACAAAAACAGTAACAGTAGCAACAAGCT TGTCCCGTGCGCGTCATGGAGCGGCGAAACGGCATGAATTAATGAGAAAC ATGGTTCATCCACTCTCACGATTGCCGCGCACACAGTGGAAGCTTTCTCA GGCGGAACACGGGACAGAGAGAGACCACCCCCTCCATAGAGTTTAGCAGG ACTTGTGGACAAAACGCCCACCATCCAACCAGAGGGTTAAGCCCAAAACA GCTATCAACGCCAGGAGATAAGTAGGTTTCGAAGTAAACATTAACAGCAC GATACAAAAA
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Coding sequence (CDS) from alignment at chr11:406988..409947-

>NO11G01120.1 ID=NO11G01120.1|Name=NO11G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at chr11:406988..409947- (Nannochloropsis oceanica)
ATGCATAATACGGTGACCCTGGCTCGCGTGTCCCTGCGCGATAATTTGCT
TTGTGTCTGCGACATGCGCGGAGTGATTGTCTTCGCTTCAGACGACCTCC
TGTGGGCCTTGGGACTTCCGGGCCCGACCATTCGGCACATTGGCTCCAGC
GTCCTAGACTTGTTGACCGACGAGGACAAACTTGAGTACAAGAACGCCAT
GAGAAGGAAATCGGGCTCGCTTTTGCGATGCCAGCAGAATGGATGTTTCG
TGTGGCTTGACATCCAGTCAACGGGCCAGACCAGCCGGCTCAAGAGAGCA
TTGCACCGCGTGGAAAATGCACGGGCCACCTGCAGCTCCATTACCCCCCC
CGCCAGTCACAGCGAGTGCAATAACAACCACAACCACCAGGAGCCGTATT
CCACCAGCTCCTCTAATACCAGCGGCACCAACAACAATAGTCCTCTCAAC
TACCAGGTCAAGGCCTTGGCTACTGCCTCGTATCCGTGTGCCGGCGGCGC
GGGGCGCATTGCTGGTTTGGAGGAGCATGTTATGACCAAGGAACAAACTC
TCGACTGGTTCCTCTACACCCGGGAGCAAGGTGAAGGCATGGATGAGCTG
GCGGATGACGAGAACGATGACGACGGCGACGACACTGCCACGGATGGAAG
CGACTCGGATGGGGACGAGGGAGACGATGTCCGCCTCGCCCGACCAACGC
CTACGGCCCCTGGTCATACGATGGAACCCGTAACCATGCCCTCTTTGGGC
GGTCTGTTTCTGCATGAGAGTGGGAGTGAAAGCAACTCGGCCTGTACCAC
CTCAAATTCGGTCTGCTCCTCGGAGCAGCTGTCAGGGGCGGGGGCCGCAG
GCTGGACGGAGGAAGAGCAGCAACGCCAGCAGGAAGAGGAGGCAGCTATG
GTGCGAGAATACTCTTTTAGAGAAATTTTTGAGTATTTCAGCGCCGGCGC
GAAGGTTATGAGCCAGTCCACCAGCTTCAGCCGTGGGGGGTCCCGTGTCC
CGTCTGTCTTGAACTTCGGGTCGGCAGCAGCTGCAGTAGCAGCAGCTGCA
GTCGCGCCCAGCCCTCCTGCCGCTGGCTTGGTCCGGCCCATGCTTTCGCA
ACGAGACTCTCGACCCTTCAGTGAGCGGGTGGCAGCCAAGTGCCGCGCTG
CCCCCGAGGAGAGCTACAGCGCCAGCAACTACAGCTTCGCCCCTGTGGTA
TCCTCTTCTTCCTCCGCTTCTTCCTCGTCATGGTTATTGCAAAACAAGTA
CAAGGTCAGTGGGTATGTGGGCAAGGCAGCTGCGACGCTGGGCCTTGGTA
CTGTTGTCAGCAGCACGGTGTCGGCTGCGTGCCCGTCTCTGATGACGGCA
CCGGCGATGTTGGAGGAGAGCGGGTGGGATTGGTACGTGGACGTCTAG
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Synonyms
Publications