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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:406988..409947 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01120.1 vs.
Match: EWM25094.1 (hypothetical protein Naga_100016g27 [Nannochloropsis gaditana]) HSP 1 Score: 394.8 bits (1013), Expect = 3.700e-106 Identity = 263/474 (55.49%), Postives = 319/474 (67.30%), Query Frame = 0
Query: 1 MHNTVTLARVSLRDNLLCVCDMRGVIVFASDDLLWALGLPGPTIRHIGSSVLDLLTDEDKLEYKNAMRRKSGSLLRCQQNGCFVWLDIQSTGQTS-RLKRALHRVENARATCSSITPPASHSECNNNHNHQEPYSTSSSNTSGTNNNSPLNYQVKALATASYPCAGGAGRIAGLEEHVMTKEQTLDWFLYTREQGEGMDELADDENDDDGDDTATDGSDSDGDEGDDVRLARPTPTAPGHTMEPVTMPSLGGLFLHESGSESN--------SACTTSNSVCSSEQLSGAGAAGWTEEEQQRQQEEEAAMVREYSFREIFEYFSAGAKVMSQSTSFSRGGSRVPSVLNFGSAAAAVAAAAVAPSPPAAGLVRPMLSQRDSRPFSERVAAKCRAAPEESYSASNYSFAPVVSSSSSASSSSWLLQNKYKVSGYVGKAAATLGLGTVVSSTVSAACPSLMTAPAMLEESGWDWYVDV 466
M++ V LARVSLRDNLLCVCD++GVIVFASDDLLWALGL GPT RHIG+S+ DLL DED EYKN++RRKSGSLLRC+QNGCFVWLDIQ +LKRAL RV+ ARA +++ + N N + + + + NNSPLN+Q KALA+AS CA AG + GLEE+V+TK++TLD FL Q E D+ + +D T+ SD + +EG + R P A + P +PS G L L + ++ +ACTTS+SV SSEQL G G A WT+EEQ RQQ+EEAAMVREYSFREIFEY SAGAK MS +TSFS GSR S LN G + AA +PS PAA L +P RDSRPFSERVAAKCRAAPEES+ +S+ ++ SSSW LQNKYKVSGY+GKAAATLGLGTV S+ V A+ +L P ML+ESGWDWYVDV
Sbjct: 8 MNSNVLLARVSLRDNLLCVCDLKGVIVFASDDLLWALGLQGPTTRHIGASLFDLLADEDVEEYKNSLRRKSGSLLRCKQNGCFVWLDIQCVSHVPPQLKRALSRVQKARAAGFPSLVCLNNNSISENVNLIADINRAVAPHA--MNNSPLNHQSKALASAS--CAWAAGNVVGLEENVLTKDRTLDSFLTPAGQEEESATRPADKAVGE-EDAVTEASDPE-EEG--IYATRAEPQASVGAINPC-LPSFGCLTLEDGANQGQRATRSLCTTACTTSSSVSSSEQL-GDGLALWTDEEQLRQQQEEAAMVREYSFREIFEYLSAGAKSMSHATSFSLSGSRASSTLNMGP-----STAAASPSSPAAVLAQPC---RDSRPFSERVAAKCRAAPEESFLSSH---------GLASGSSSWRLQNKYKVSGYMGKAAATLGLGTVKSAAVGAS--ALRHVPPMLDESGWDWYVDV 452
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01120.1 ID=NO11G01120.1|Name=NO11G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2804bp GTTCAGCATGAGAGAATCAGAAGGATAAAGGAATGTTTGCGGATGCGCGC TAGTGTTGTTTCTCTTTCTCTATTCCACCACTCTGTCCAATCACTGCCCT GGGCGTCCTGAATTGGGTCATGTTTTTTTTCTGCATCATGACCGCGCTCG CACATCGACGTGTGGCCTGCATTCAACTGCACTTACAAAGAGAAGCCAGA ACAGTGTTGTTGATGTCAACTGCAGGCCCCAGAAATGCCCTTGCGCTTTC GGTGGGTCCTTGCGTGCGTCATAGATTGTGCACGTGCTCTTGGCTATTGA AATGGGGGCCCTAGGTATTTGGGTATGCTTGTGTTCTAGTCCATGCTCCT TGTGTGCCCTGTGGCACGCACCGCCGGTGGCCTTGGTTGACACTTGACAC TAAGCATCTGCTTGATCCGCTCCGCTCGTTGATTCCCTTGACACGCGCCC GGCCTCACCCCACGCTTCCCCCGTCCCTACCACACCACGGGTCTTCATAC ATCCTCACCAGCACTCAACAGCATGCATAATACGGTGACCCTGGCTCGCG TGTCCCTGCGCGATAATTTGCTTTGTGTCTGCGACATGCGCGGAGTGATT GTCTTCGCTTCAGACGACCTCCTGTGGGCCTTGGGACTTCCGGGCCCGAC CATTCGGCACATTGGCTCCAGCGTCCTAGACTTGTTGACCGACGAGGACA AACTTGAGTACAAGAACGCCATGAGAAGGAAATCGGGCTCGCTTTTGCGA TGCCAGCAGAATGGATGTTTCGTGTGGCTTGACATCCAGTCAACGGGCCA GACCAGCCGGCTCAAGAGAGCATTGCACCGCGTGGAAAATGCACGGGCCA CCTGCAGCTCCATTACCCCCCCCGCCAGTCACAGCGAGTGCAATAACAAC CACAACCACCAGGAGCCGTATTCCACCAGCTCCTCTAATACCAGCGGCAC CAACAACAATAGTCCTCTCAACTACCAGGTCAAGGCCTTGGCTACTGCCT CGTATCCGTGTGCCGGCGGCGCGGGGCGCATTGCTGGTTTGGAGGAGCAT GTTATGACCAAGGAACAAACTCTCGACTGGTTCCTCTACACCCGGGAGCA AGGTGAAGGCATGGATGAGCTGGCGGATGACGAGAACGATGACGACGGCG ACGACACTGCCACGGATGGAAGCGACTCGGATGGGGACGAGGGAGACGAT GTCCGCCTCGCCCGACCAACGCCTACGGCCCCTGGTCATACGATGGAACC CGTAACCATGCCCTCTTTGGGCGGTCTGTTTCTGCATGAGAGTGGGAGTG AAAGCAACTCGGCCTGTACCACCTCAAATTCGGTCTGCTCCTCGGAGCAG CTGTCAGGGGCGGGGGCCGCAGGCTGGACGGAGGAAGAGCAGCAACGCCA GCAGGAAGAGGAGGCAGCTATGGTGCGAGAATACTCTTTTAGAGAAATTT TTGAGTATTTCAGCGCCGGCGCGAAGGTTATGAGCCAGTCCACCAGCTTC AGCCGTGGGGGGTCCCGTGTCCCGTCTGTCTTGAACTTCGGGTCGGCAGC AGCTGCAGTAGCAGCAGCTGCAGTCGCGCCCAGCCCTCCTGCCGCTGGCT TGGTCCGGCCCATGCTTTCGCAACGAGACTCTCGACCCTTCAGTGAGCGG GTGGCAGCCAAGTGCCGCGCTGCCCCCGAGGAGAGCTACAGCGCCAGCAA CTACAGCTTCGCCCCTGTGGTATCCTCTTCTTCCTCCGCTTCTTCCTCGT CATGGTTATTGCAAAACAAGTACAAGGTCAGTGGGTATGTGGGCAAGGCA GCTGCGACGCTGGGCCTTGGTACTGTTGTCAGCAGCACGGTGTCGGCTGC GTGCCCGTCTCTGATGACGGCACCGGCGATGTTGGAGGAGAGCGGGTGGG ATTGGTACGTGGACGTCTAGAGAGAAGGAAAGTGAGAGAGAGAGAGAGAG TGGGTGTGTGATTGTGTAGATTGGTGTATGTGCGTATGCGACGTGCCACC CGGCCAGCAGTCGGCGTAAGACCCATCGGGGTAAGTTGCATGTCGGACAA AGTGAATAGAGAGATAGAGAGTAAGTGCATCGGGAACAGTAAAGGGACAC AGCAGTATCCAGCTTCATTGAGTAGATATGAATACAAATTTACAGTGATC GAGGGAGGAAGGAGAGTCTACACGCTTCGCATTTCTCAATGCGGCTTCCG CATGTGTCTTCCTTTCTGCCCTGGGGCTCCCGTCACTGTGTGATATGTGC ATAGGAATCCCATAGACAAAGAAATGAACAAGCGGAAGAGAGGAGGGCCA GAGAAACGTAACTGGCTGATTGAACAGAGAGACCGATAAAGGTAGGACAA GCGCTGCAGTGGCAGGCCCAAGTTCCAATGCCTTGGCACGCGGATTTTGT GGTCGCCCGCAGCCTGCGGTCGGCTTTCTGTGTCACGATTTCCCCCCTGG AAGAGAAGAGAGATTTGACAGACGAAGTCTTAAACCAACCACACGTACAA TAGAAAAGGGATGACAACAAAAACAGTAACAGTAGCAACAAGCTTGTCCC GTGCGCGTCATGGAGCGGCGAAACGGCATGAATTAATGAGAAACATGGTT CATCCACTCTCACGATTGCCGCGCACACAGTGGAAGCTTTCTCAGGCGGA ACACGGGACAGAGAGAGACCACCCCCTCCATAGAGTTTAGCAGGACTTGT GGACAAAACGCCCACCATCCAACCAGAGGGTTAAGCCCAAAACAGCTATC AACGCCAGGAGATAAGTAGGTTTCGAAGTAAACATTAACAGCACGATACA AAAA back to topprotein sequence of NO11G01120.1 >NO11G01120.1-protein ID=NO11G01120.1-protein|Name=NO11G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp MHNTVTLARVSLRDNLLCVCDMRGVIVFASDDLLWALGLPGPTIRHIGSS VLDLLTDEDKLEYKNAMRRKSGSLLRCQQNGCFVWLDIQSTGQTSRLKRA LHRVENARATCSSITPPASHSECNNNHNHQEPYSTSSSNTSGTNNNSPLN YQVKALATASYPCAGGAGRIAGLEEHVMTKEQTLDWFLYTREQGEGMDEL ADDENDDDGDDTATDGSDSDGDEGDDVRLARPTPTAPGHTMEPVTMPSLG GLFLHESGSESNSACTTSNSVCSSEQLSGAGAAGWTEEEQQRQQEEEAAM VREYSFREIFEYFSAGAKVMSQSTSFSRGGSRVPSVLNFGSAAAAVAAAA VAPSPPAAGLVRPMLSQRDSRPFSERVAAKCRAAPEESYSASNYSFAPVV SSSSSASSSSWLLQNKYKVSGYVGKAAATLGLGTVVSSTVSAACPSLMTA PAMLEESGWDWYVDV* back to topmRNA from alignment at chr11:406988..409947- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01120.1 ID=NO11G01120.1|Name=NO11G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2960bp|location=Sequence derived from alignment at chr11:406988..409947- (Nannochloropsis oceanica) GTTCAGCATGAGAGAATCAGAAGGATAAAGGAATGTTTGCGGATGCGCGC
TAGTGTTGTTTCTCTTTCTCTATTCCACCACTCTGTCCAATCACTGCCCT
GGGCGTCCTGAATTGGGTCATGTTTTTTTTCTGCATCATGACCGCGCTCG
CACATCGACGTGTGGCCTGCATTCAACTGCACTTACAAAGAGAAGCCAGA
ACAGTGTTGTTGATGTCAACTGCAGGCCCCAGAAATGCCCTTGCGCTTTC
GGTGGGTCCTTGCGTGCGTCATAGATTGTGCACGTGCTCTTGGCTATTGA
AATGGGGGCCCTAGGTATTTGGGTATGCTTGTGTTCTAGTCCATGCTCCT
TGTGTGCCCTGTGGCACGCACCGCCGGTGGCCTTGGTTGACACTTGACAC
TAAGCATCTGCTTGATCCGCTCCGCTCGTTGATTCCCTTGACACGCGCCC
GGCCTCACCCCACGCTTCCCCCGTCCCTACCACACCACGGGTCTTCATAC
ATCCTCACCAGCACTCAACAGCATGCATAATACGGTGACCCTGGCTCGCG
TGTCCCTGCGCGATAATTTGCTTTGTGTCTGCGACATGCGCGGAGTGATT
GTCTTCGCTTCAGACGACCTCCTGTGGGCCTTGGGACTTCCGGGCCCGAC
CATTCGGCACATTGGCTCCAGCGTCCTAGACTTGTTGACCGACGAGGACA
AACTTGAGTACAAGGTATGTCTGGGTATGAGGGGAAAGTAGGGGAGTAAG
GCGGCGGGGAATTTGCAGTGCGACACATGTATCGACCCGCTTCTTTTCGA
CCACTTTGTTCTGGGTCTGGGATCTGCTGCACACATCTCATAACTCCCTT
CCACTCGTATTCACCCACAGAACGCCATGAGAAGGAAATCGGGCTCGCTT
TTGCGATGCCAGCAGAATGGATGTTTCGTGTGGCTTGACATCCAGTCAAC
GGGCCAGACCAGCCGGCTCAAGAGAGCATTGCACCGCGTGGAAAATGCAC
GGGCCACCTGCAGCTCCATTACCCCCCCCGCCAGTCACAGCGAGTGCAAT
AACAACCACAACCACCAGGAGCCGTATTCCACCAGCTCCTCTAATACCAG
CGGCACCAACAACAATAGTCCTCTCAACTACCAGGTCAAGGCCTTGGCTA
CTGCCTCGTATCCGTGTGCCGGCGGCGCGGGGCGCATTGCTGGTTTGGAG
GAGCATGTTATGACCAAGGAACAAACTCTCGACTGGTTCCTCTACACCCG
GGAGCAAGGTGAAGGCATGGATGAGCTGGCGGATGACGAGAACGATGACG
ACGGCGACGACACTGCCACGGATGGAAGCGACTCGGATGGGGACGAGGGA
GACGATGTCCGCCTCGCCCGACCAACGCCTACGGCCCCTGGTCATACGAT
GGAACCCGTAACCATGCCCTCTTTGGGCGGTCTGTTTCTGCATGAGAGTG
GGAGTGAAAGCAACTCGGCCTGTACCACCTCAAATTCGGTCTGCTCCTCG
GAGCAGCTGTCAGGGGCGGGGGCCGCAGGCTGGACGGAGGAAGAGCAGCA
ACGCCAGCAGGAAGAGGAGGCAGCTATGGTGCGAGAATACTCTTTTAGAG
AAATTTTTGAGTATTTCAGCGCCGGCGCGAAGGTTATGAGCCAGTCCACC
AGCTTCAGCCGTGGGGGGTCCCGTGTCCCGTCTGTCTTGAACTTCGGGTC
GGCAGCAGCTGCAGTAGCAGCAGCTGCAGTCGCGCCCAGCCCTCCTGCCG
CTGGCTTGGTCCGGCCCATGCTTTCGCAACGAGACTCTCGACCCTTCAGT
GAGCGGGTGGCAGCCAAGTGCCGCGCTGCCCCCGAGGAGAGCTACAGCGC
CAGCAACTACAGCTTCGCCCCTGTGGTATCCTCTTCTTCCTCCGCTTCTT
CCTCGTCATGGTTATTGCAAAACAAGTACAAGGTCAGTGGGTATGTGGGC
AAGGCAGCTGCGACGCTGGGCCTTGGTACTGTTGTCAGCAGCACGGTGTC
GGCTGCGTGCCCGTCTCTGATGACGGCACCGGCGATGTTGGAGGAGAGCG
GGTGGGATTGGTACGTGGACGTCTAGAGAGAAGGAAAGTGAGAGAGAGAG
AGAGAGTGGGTGTGTGATTGTGTAGATTGGTGTATGTGCGTATGCGACGT
GCCACCCGGCCAGCAGTCGGCGTAAGACCCATCGGGGTAAGTTGCATGTC
GGACAAAGTGAATAGAGAGATAGAGAGTAAGTGCATCGGGAACAGTAAAG
GGACACAGCAGTATCCAGCTTCATTGAGTAGATATGAATACAAATTTACA
GTGATCGAGGGAGGAAGGAGAGTCTACACGCTTCGCATTTCTCAATGCGG
CTTCCGCATGTGTCTTCCTTTCTGCCCTGGGGCTCCCGTCACTGTGTGAT
ATGTGCATAGGAATCCCATAGACAAAGAAATGAACAAGCGGAAGAGAGGA
GGGCCAGAGAAACGTAACTGGCTGATTGAACAGAGAGACCGATAAAGGTA
GGACAAGCGCTGCAGTGGCAGGCCCAAGTTCCAATGCCTTGGCACGCGGA
TTTTGTGGTCGCCCGCAGCCTGCGGTCGGCTTTCTGTGTCACGATTTCCC
CCCTGGAAGAGAAGAGAGATTTGACAGACGAAGTCTTAAACCAACCACAC
GTACAATAGAAAAGGGATGACAACAAAAACAGTAACAGTAGCAACAAGCT
TGTCCCGTGCGCGTCATGGAGCGGCGAAACGGCATGAATTAATGAGAAAC
ATGGTTCATCCACTCTCACGATTGCCGCGCACACAGTGGAAGCTTTCTCA
GGCGGAACACGGGACAGAGAGAGACCACCCCCTCCATAGAGTTTAGCAGG
ACTTGTGGACAAAACGCCCACCATCCAACCAGAGGGTTAAGCCCAAAACA
GCTATCAACGCCAGGAGATAAGTAGGTTTCGAAGTAAACATTAACAGCAC
GATACAAAAA back to topCoding sequence (CDS) from alignment at chr11:406988..409947- >NO11G01120.1 ID=NO11G01120.1|Name=NO11G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at chr11:406988..409947- (Nannochloropsis oceanica) ATGCATAATACGGTGACCCTGGCTCGCGTGTCCCTGCGCGATAATTTGCT TTGTGTCTGCGACATGCGCGGAGTGATTGTCTTCGCTTCAGACGACCTCC TGTGGGCCTTGGGACTTCCGGGCCCGACCATTCGGCACATTGGCTCCAGC GTCCTAGACTTGTTGACCGACGAGGACAAACTTGAGTACAAGAACGCCAT GAGAAGGAAATCGGGCTCGCTTTTGCGATGCCAGCAGAATGGATGTTTCG TGTGGCTTGACATCCAGTCAACGGGCCAGACCAGCCGGCTCAAGAGAGCA TTGCACCGCGTGGAAAATGCACGGGCCACCTGCAGCTCCATTACCCCCCC CGCCAGTCACAGCGAGTGCAATAACAACCACAACCACCAGGAGCCGTATT CCACCAGCTCCTCTAATACCAGCGGCACCAACAACAATAGTCCTCTCAAC TACCAGGTCAAGGCCTTGGCTACTGCCTCGTATCCGTGTGCCGGCGGCGC GGGGCGCATTGCTGGTTTGGAGGAGCATGTTATGACCAAGGAACAAACTC TCGACTGGTTCCTCTACACCCGGGAGCAAGGTGAAGGCATGGATGAGCTG GCGGATGACGAGAACGATGACGACGGCGACGACACTGCCACGGATGGAAG CGACTCGGATGGGGACGAGGGAGACGATGTCCGCCTCGCCCGACCAACGC CTACGGCCCCTGGTCATACGATGGAACCCGTAACCATGCCCTCTTTGGGC GGTCTGTTTCTGCATGAGAGTGGGAGTGAAAGCAACTCGGCCTGTACCAC CTCAAATTCGGTCTGCTCCTCGGAGCAGCTGTCAGGGGCGGGGGCCGCAG GCTGGACGGAGGAAGAGCAGCAACGCCAGCAGGAAGAGGAGGCAGCTATG GTGCGAGAATACTCTTTTAGAGAAATTTTTGAGTATTTCAGCGCCGGCGC GAAGGTTATGAGCCAGTCCACCAGCTTCAGCCGTGGGGGGTCCCGTGTCC CGTCTGTCTTGAACTTCGGGTCGGCAGCAGCTGCAGTAGCAGCAGCTGCA GTCGCGCCCAGCCCTCCTGCCGCTGGCTTGGTCCGGCCCATGCTTTCGCA ACGAGACTCTCGACCCTTCAGTGAGCGGGTGGCAGCCAAGTGCCGCGCTG CCCCCGAGGAGAGCTACAGCGCCAGCAACTACAGCTTCGCCCCTGTGGTA TCCTCTTCTTCCTCCGCTTCTTCCTCGTCATGGTTATTGCAAAACAAGTA CAAGGTCAGTGGGTATGTGGGCAAGGCAGCTGCGACGCTGGGCCTTGGTA CTGTTGTCAGCAGCACGGTGTCGGCTGCGTGCCCGTCTCTGATGACGGCA CCGGCGATGTTGGAGGAGAGCGGGTGGGATTGGTACGTGGACGTCTAG back to top
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