NO10G02420, NO10G02420 (gene) Nannochloropsis oceanica

Overview
NameNO10G02420
Unique NameNO10G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2149
Alignment locationchr10:660013..662161 -

Link to JBrowse

Properties
Property NameValue
DescriptionDna topoisomerase 6 subunit a
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:660013..662161 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0003918DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0003677DNA binding
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0006265DNA topological change
GO:0000737DNA catabolic process, endonucleolytic
GO:0016043cellular component organization
GO:0009056catabolic process
GO:0006259DNA metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR036078Spo11/TopoVI_A_sf
IPR013049Spo11/TopoVI_A_N
IPR004085TopoVI_A
IPR002815Spo11/TopoVI_A
Homology
BLAST of NO10G02420 vs. NCBI_GenBank
Match: EWM25406.1 (dna topoisomerase 6 subunit a [Nannochloropsis gaditana])

HSP 1 Score: 746.1 bits (1925), Expect = 8.200e-212
Identity = 373/398 (93.72%), Postives = 388/398 (97.49%), Query Frame = 0
Query:  189 LTSVGSSKVDKVLEEVRLLMLRSRRYDAPNPSLAELGITTVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            +T VG+SKVDKVLEEVR LMLRSRR DAPNP+LA+LGITTVREVSDMAPEGVL+EIE+T+L  AGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATR FLNPREVRKTAITTRI+QLVHEVLSKGIHITKRDMFYTDVKLF+DQK+SDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGD+IDCTRMGVGGKAIPPY+DKIA IQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLK ELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKY IP QCRLDMT+HDMRTGRQLLQE+FIQKNPEWVKEL+LMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI
Sbjct:  176 VTGVGNSKVDKVLEEVRQLMLRSRRDDAPNPTLADLGITTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: CBJ26510.1 (DNA topoisomerase VI subunit A [Ectocarpus siliculosus])

HSP 1 Score: 575.5 bits (1482), Expect = 1.900e-160
Identity = 288/413 (69.73%), Postives = 342/413 (82.81%), Query Frame = 0
Query:  192 VGSSKVDKVLEEVRLLMLRSRRY--------------DA---PNPSLAELGIT-TVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            + S+K  K+ ++V +++ R R+               DA     P+L ELG++  V EV +M   GV+ EIE+  ++ A  I+ G GF ++VPTRS+ NQ Y+ ELDRIVL DKV++R F++    RKTAITTR++QLVH+VL KGIHITKRDMFYTDVKLFK+Q ESD VLDDVACM+GCTRSCLNVVAS+KGLVVGRV F EDGD IDCTRMGVGGKAIPPYIDKI  I+SDA FILLVEKEAAYMR+AEDRFY KYPCIVITAKGQPDVATRLFLK+LK EL+IPV+GLVDSDPYGLKILSVYM+GSKNMSYDSASLTT DIKWLGVRPSDLD+YNIP QCRLDMTEHD++TG++LLQE+FI+KN  W +ELELM+K KKKAEIQ+LSAFGFQY+T++YLP+KL+ GDW+
Sbjct:  227 LSSAKPAKLADDVEVVLRRLRKLRGQMGRXXXXXADGDADRKKQPTLLELGLSGDVTEVREMGAAGVMDEIERIAVETALSIMEGNGFGFRVPTRSSGNQKYVEELDRIVLGDKVSSRNFVSTAMARKTAITTRVVQLVHQVLGKGIHITKRDMFYTDVKLFKEQSESDNVLDDVACMVGCTRSCLNVVASDKGLVVGRVTFMEDGDLIDCTRMGVGGKAIPPYIDKITNIRSDADFILLVEKEAAYMRMAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTEHDIKTGKELLQEDFIKKNEPWCRELELMIKSKKKAEIQSLSAFGFQYLTQNYLPQKLQNGDWV 639          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: XP_009821956.1 (hypothetical protein H257_00790 [Aphanomyces astaci] >ETV89556.1 hypothetical protein H257_00790 [Aphanomyces astaci])

HSP 1 Score: 559.7 bits (1441), Expect = 1.100e-155
Identity = 267/368 (72.55%), Postives = 317/368 (86.14%), Query Frame = 0
Query:  219 PSLAELGITTVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            P+LAEL +  VREV +M P  V  EIE  V+ V   ILRGEGF Y VP+R+  NQ+Y+ ELDRIVL+DK++ R F N   VRKTAITT++++LVH++L+KGIH+TKRD+FYTDVKLFKDQ ESD +LDDVACM+GCTRS L+VVASEKG+VVGR+ F +DGD IDCTRMGVGGKAIPPYID++  I SDAKFILLVEK+AA+MRLAEDRFYNKYPCI++TAKGQPDVATR+FLK+++ ELH+PVLGLVDSDPYGLKILSVYM+GSKNMSYDSASLT  DIKWLGVRPSDL KY IP QCRL M E D++TG+ +L+EEFI+KNP W KELELMLK K+KAEIQALS FGFQ++T++YLP+KL  GDWI
Sbjct:   74 PTLAELNVFNVREVREMVPTEVSTEIESMVVGVVSSILRGEGFRYAVPSRTTANQIYVTELDRIVLADKLSVRDFTNMSAVRKTAITTKVMELVHQLLAKGIHVTKRDLFYTDVKLFKDQSESDTILDDVACMVGCTRSSLHVVASEKGVVVGRIAFRDDGDLIDCTRMGVGGKAIPPYIDRLTDITSDAKFILLVEKDAAFMRLAEDRFYNKYPCIILTAKGQPDVATRMFLKRIQNELHLPVLGLVDSDPYGLKILSVYMSGSKNMSYDSASLTCRDIKWLGVRPSDLTKYKIPDQCRLPMKETDIKTGKDMLEEEFIKKNPLWSKELELMLKSKEKAEIQALSTFGFQFLTQEYLPQKLRDGDWI 441          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: GAQ77576.1 (Topoisomerase 6 subunit A homolog 3 [Klebsormidium nitens])

HSP 1 Score: 539.7 bits (1389), Expect = 1.200e-149
Identity = 262/390 (67.18%), Postives = 325/390 (83.33%), Query Frame = 0
Query:  198 DKVLEEVRLLMLRSRRYDAPNPSLAELGITTV-REVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            D++L +V  L    ++    + +L +L +  V +EV D+    V+ EIE+T+L VA  IL G GF Y +PTR++ NQLY+ +LDRIVL DK + R + N   VRKTAITTRILQL+H++ +KGIH+TKRD+FYTDVKLF++Q +SD +LDDV+CMLGCTRS LNVV SEKG+VVGR+ F EDGD IDCT+MGVGGKAIPP IDK+   QSDAKFILLVEK+AA+MRLAEDRFYN++PC++ITAKGQPDVATRLFLKK+K EL IPVLGLVDSDPYGLKILSVYM+GSKNMSYDS++LTT DIKWLGVRPSDLD++ IP QCRL MT+ DM+TG+++L+E+FI+K+P W  ELELM+K K+KAEIQALS+FGFQY+TE YLP KL++GDWI
Sbjct:   28 DEILAKVAKLSEAEKKKPKESVTLQDLNLPNVSKEVVDLGAPQVISEIEKTMLSVAASILNGHGFGYTIPTRTSANQLYVPQLDRIVLKDKSSFRQYGNMSTVRKTAITTRILQLIHQLCNKGIHVTKRDLFYTDVKLFQEQGQSDTILDDVSCMLGCTRSSLNVVGSEKGVVVGRLIFVEDGDVIDCTKMGVGGKAIPPNIDKVTGFQSDAKFILLVEKDAAFMRLAEDRFYNRFPCVIITAKGQPDVATRLFLKKMKSELKIPVLGLVDSDPYGLKILSVYMSGSKNMSYDSSNLTTPDIKWLGVRPSDLDRFKIPEQCRLPMTDADMKTGKEMLEEDFIKKDPRWHAELELMVKKKEKAEIQALSSFGFQYLTEVYLPMKLQEGDWI 417          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: XP_002177352.1 (type II DNA topoisomerase VI subunit [Phaeodactylum tricornutum CCAP 1055/1] >EEC51815.1 type II DNA topoisomerase VI subunit [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 537.0 bits (1382), Expect = 7.500e-149
Identity = 257/356 (72.19%), Postives = 313/356 (87.92%), Query Frame = 0
Query:  231 EVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            EV ++    VL  +E   L +A  +L  +GFS ++P+R+A+NQ+Y+ E DRIVL  K ++R+FLN +E RK+AIT R++QL+H VL K IHITKRD+FYTDVKLF DQ ESD VLDDVA M+GCTRS L+VVAS+KGLVVGR+QFEEDGD+IDCT+MGVGGKAIPPYIDKI  I SDA+FILLVEKEAAYMR+AEDRFY++YPCI+ITAKGQPDVATR+FL ++  EL IPVLGLVDSDPYGLKILSVYM+GSKNMSYDSASLTT DIKWLG+RPSDLDKY++P QCRLDMTE+D++TG+++++E+FIQKNPEW+KELE+M+K KKKAEIQALS+FGFQY+TE YLPRKL++GDWI
Sbjct:   75 EVVELPATQVLEGMEAMALHIAQQVLERKGFSLEIPSRAASNQIYVKEWDRIVLGGKRSSRSFLNVKESRKSAITLRVMQLLHAVLMKRIHITKRDLFYTDVKLFVDQAESDGVLDDVATMIGCTRSNLHVVASDKGLVVGRIQFEEDGDFIDCTKMGVGGKAIPPYIDKIENIASDAEFILLVEKEAAYMRMAEDRFYHRYPCIIITAKGQPDVATRMFLARITSELKIPVLGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGLRPSDLDKYDLPEQCRLDMTENDIKTGKEMMKEDFIQKNPEWMKELEIMVKTKKKAEIQALSSFGFQYVTEQYLPRKLKEGDWI 430          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: XP_009776251.1 (PREDICTED: DNA topoisomerase 6 subunit A [Nicotiana sylvestris] >XP_016463309.1 PREDICTED: DNA topoisomerase 6 subunit A-like [Nicotiana tabacum])

HSP 1 Score: 535.8 bits (1379), Expect = 1.700e-148
Identity = 257/388 (66.24%), Postives = 324/388 (83.51%), Query Frame = 0
Query:  200 VLEEVRLLMLRSRRYDAPNPSLAELGI-TTVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            +L+ ++ L   S    +  P+LA++G+ TT REV+D+  + V + I   +L +A  IL GEGFS+ VP+RS+ NQLY+ ELDRI+L DK + R F N   VRKT ITTRILQL+H++ +K IH+TKRD+FYTDVKLF+DQ +SD VLDDV+C+LGCTRS LNVVA+EKG+VVGR+ F +DGD IDCT+MG+GGKAIPP ID++  +QSDA FILLVEK+AAYMRLAEDRFYN++PCI++TAKGQPDVATRLFL+K+KMEL++PVL LVDSDPYGLKILSVY  GSKNMSYDSA+LTT DIKWLG+RPSDLDKY IP QCRL MTE D++TG+ LL+E+F++KNP WV+EL LM+K K+KAEIQALS+FGFQY++E YLP KL++ DW+
Sbjct:   33 ILQTLKNLKASSAASSSKTPTLADVGLSTTCREVTDLPIDEVQYNIGSVMLNLARSILAGEGFSFNVPSRSSANQLYVPELDRIILKDKSSIRAFSNVSTVRKTTITTRILQLIHQLCTKNIHVTKRDLFYTDVKLFQDQTQSDTVLDDVSCILGCTRSSLNVVAAEKGVVVGRLIFSDDGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELNLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPAWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQEQDWL 420          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: PTQ31190.1 (hypothetical protein MARPO_0114s0011 [Marchantia polymorpha] >PTQ31191.1 hypothetical protein MARPO_0114s0011 [Marchantia polymorpha])

HSP 1 Score: 535.4 bits (1378), Expect = 2.200e-148
Identity = 262/388 (67.53%), Postives = 319/388 (82.22%), Query Frame = 0
Query:  200 VLEEVRLLMLRSRRYDAPNPSLAELGIT-TVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            +L  +R     S++      +LAEL ++   +EV D++   VL EIE+T+L +A  IL G+GF Y +P RS+ NQLY+ ELDRIVL DK   R F N   VRKTAITTRILQLVH++  K IH+TKRD+FYTDVKLF +Q +SD VLDDV+CMLGCTRS LNVVASEKG+VVGR+ F EDGD IDCT+MGVGGKAIPP IDK+    SDA FILLVEK+AA+MRLAEDRFYN++PC++ITAKGQPDVATRLFLKK+K +L IPVLGLVDSDPYGLKILSVY++GSKNMSYDS++LTT DIKWLGVRP+DLDKY IP QCRL MTE D++TG+ LL+E+FI+K+P W+KELELM+K K+KAEIQALS+FGFQY++E YLP K+++ DWI
Sbjct:   52 ILASIREFSEASKKATVETRTLAELNLSHACKEVVDLSTTDVLSEIEKTILHIAQSILNGKGFGYNIPARSSANQLYVPELDRIVLKDKATFRPFANMSSVRKTAITTRILQLVHQLCQKRIHVTKRDLFYTDVKLFVEQTQSDSVLDDVSCMLGCTRSSLNVVASEKGVVVGRLIFVEDGDTIDCTKMGVGGKAIPPNIDKVKDFVSDALFILLVEKDAAFMRLAEDRFYNRFPCVIITAKGQPDVATRLFLKKMKTDLKIPVLGLVDSDPYGLKILSVYLSGSKNMSYDSSNLTTPDIKWLGVRPTDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFIKKDPNWIKELELMVKTKEKAEIQALSSFGFQYLSEVYLPLKIQQRDWI 439          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: XP_019239263.1 (PREDICTED: DNA topoisomerase 6 subunit A [Nicotiana attenuata] >OIT21152.1 dna topoisomerase 6 subunit a [Nicotiana attenuata])

HSP 1 Score: 533.9 bits (1374), Expect = 6.400e-148
Identity = 256/388 (65.98%), Postives = 324/388 (83.51%), Query Frame = 0
Query:  200 VLEEVRLLMLRSRRYDAPNPSLAELGI-TTVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            +L+ ++ L + S    +   +LA++G+ TT REV+D+  + V + I   +L +A  IL GEGFS+ VP+RS+ NQLY+ ELDRI+L DK + R F N   VRKT ITTRILQL+H++ +K IH+TKRD+FYTDVKLF+DQ +SD VLDDV+C+LGCTRS LNVVA+EKG+VVGR+ F +DGD IDCT+MG+GGKAIPP ID++  +QSDA FILLVEK+AAYMRLAEDRFYN++PCI++TAKGQPDVATRLFL+K+KMEL++PVL LVDSDPYGLKILSVY  GSKNMSYDSA+LTT DIKWLG+RPSDLDKY IP QCRL MTE D++TG+ LL+E+F++KNP WV+EL LM+K K+KAEIQALS+FGFQY++E YLP KL++ DW+
Sbjct:   33 ILQTLKTLKVSSAASSSKTLTLADVGLSTTCREVTDLPIDEVQYNIGSVMLNLARSILAGEGFSFNVPSRSSANQLYVPELDRIILKDKSSVRAFSNVSTVRKTTITTRILQLIHQLCTKNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVSCILGCTRSSLNVVAAEKGVVVGRLIFSDDGDIIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELNLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPAWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQEQDWL 420          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: XP_005710213.1 (unnamed protein product [Chondrus crispus] >CDF39919.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 532.7 bits (1371), Expect = 1.400e-147
Identity = 264/376 (70.21%), Postives = 317/376 (84.31%), Query Frame = 0
Query:  215 DAPNPS---LAELGITTV-REVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            DAP P+   L+EL +  V +EV ++    V   IE  +  VA  I+RGEGF Y VPTRSA+NQ+Y+ ELDRIVL DK ++R F N   VRK  I TRI+ LV E+ +KGIH+TKRD+FYTDVKLFK Q ESD VL+DVACM+GCTR+ L+VVASEKG+V+GRV+F E GD IDCTRMGVGGKAIPPY+++I  I+SDA+FILLVEK+AA+MRLAEDRFY+KY CI+ITAKGQPDVATRLFLKKL+  L IP++GLVDSDPYGLKILSVYM+GSKNMSYDSA+LTT DIKWLGVRPSDL+KY IP +CRL MTEHD++TG++LLQE+FI+KNP W KELELM+K K+KAEIQALS+FGFQY+TE+YLPRKL +GDWI
Sbjct:   18 DAPGPARRKLSELDLGDVFKEVLELDTGRVRRGIESILAVVARSIMRGEGFRYVVPTRSASNQMYVEELDRIVLKDKTSSRAFANTGTVRKVTIMTRIMGLVWELCNKGIHVTKRDLFYTDVKLFKTQNESDEVLNDVACMVGCTRTSLSVVASEKGIVIGRVRFREAGDLIDCTRMGVGGKAIPPYVERITDIESDAEFILLVEKDAAFMRLAEDRFYSKYACIIITAKGQPDVATRLFLKKLRETLGIPIMGLVDSDPYGLKILSVYMSGSKNMSYDSANLTTPDIKWLGVRPSDLEKYGIPERCRLPMTEHDIKTGKELLQEDFIKKNPAWYKELELMVKNKEKAEIQALSSFGFQYLTEEYLPRKLAQGDWI 393          
BLAST of NO10G02420 vs. NCBI_GenBank
Match: OEU16530.1 (DNA topoisomerase IV, alpha subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 532.7 bits (1371), Expect = 1.400e-147
Identity = 257/356 (72.19%), Postives = 311/356 (87.36%), Query Frame = 0
Query:  231 EVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            EV +++   VL  IE   LQ+   +L+ +GFS ++P+R+++NQ+Y+ + DR+VL  K   R+FLN RE RK+AIT R++QL+H VL K IHITKRD+FYTDVKLF DQ ESD VLDDVA M+GCTRS L+VVAS+KGLVVGR+QFEEDGD+IDCT+MGVGGKAIPPYIDKI  I+SDA+FILLVEKEAAYMR+AEDRFYNKYPCIVITAKGQPDVA+R+FL ++  EL IPVLGLVDSDPYGLKILSVYM+GSKNMSYDSASLTT +I WLG+RP+DLDKY++P QCRLDMTE+D++TG++LL EEFIQKNP+W+KE+E M+K KKKAEIQALS+FGFQYITE+YLPRKL +GDWI
Sbjct:   88 EVDELSTTEVLEGIEGVALQITRQVLQKKGFSMEIPSRASSNQIYLKDRDRLVLGGKRVGRSFLNVRESRKSAITLRVMQLLHAVLVKRIHITKRDLFYTDVKLFVDQAESDGVLDDVATMIGCTRSNLHVVASDKGLVVGRIQFEEDGDFIDCTKMGVGGKAIPPYIDKIENIRSDAEFILLVEKEAAYMRMAEDRFYNKYPCIVITAKGQPDVASRMFLSRITNELQIPVLGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPNIMWLGLRPTDLDKYDLPDQCRLDMTENDIKTGKELLNEEFIQKNPKWMKEIENMIKTKKKAEIQALSSFGFQYITEEYLPRKLREGDWI 443          
The following BLAST results are available for this feature:
BLAST of NO10G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25406.18.200e-21293.72dna topoisomerase 6 subunit a [Nannochloropsis gad... [more]
CBJ26510.11.900e-16069.73DNA topoisomerase VI subunit A [Ectocarpus silicul... [more]
XP_009821956.11.100e-15572.55hypothetical protein H257_00790 [Aphanomyces astac... [more]
GAQ77576.11.200e-14967.18Topoisomerase 6 subunit A homolog 3 [Klebsormidium... [more]
XP_002177352.17.500e-14972.19type II DNA topoisomerase VI subunit [Phaeodactylu... [more]
XP_009776251.11.700e-14866.24PREDICTED: DNA topoisomerase 6 subunit A [Nicotian... [more]
PTQ31190.12.200e-14867.53hypothetical protein MARPO_0114s0011 [Marchantia p... [more]
XP_019239263.16.400e-14865.98PREDICTED: DNA topoisomerase 6 subunit A [Nicotian... [more]
XP_005710213.11.400e-14770.21unnamed protein product [Chondrus crispus] >CDF399... [more]
OEU16530.11.400e-14772.19DNA topoisomerase IV, alpha subunit [Fragilariopsi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001110NSK001110Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02420.1NO10G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585993gene_3971Nannochloropsis oceanica (N. oceanica CCMP1779)gene
TOP6Agene5044Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02420.1NO10G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02420 ID=NO10G02420|Name=NO10G02420|organism=Nannochloropsis oceanica|type=gene|length=2149bp
ACAGAATCTGCATCTTCGTCTATCCTGCTAGCCGAGCAATTGAAGCCATG
CTGCGCCGCCGTGTTCAAGATGACATCAGCAGCTCCGAAGAAGAAGAGGA
GGAGGAGGAGGTTGACGAGAAGGAGGAGGATGATGTCGATGTAGACGAGA
AGGAGGACGACAGTGATTTTGAGCCAGTCAGCGATGGAAGGGGTAAGTTC
AAGGCCAATAGTAAGCCCAAAGCCAAGGCAATCCCGAAGAGGCCTTCAAC
GGCCAGCGCGCGGTCGAAGAAGAATTTGAGTGCCGCAGCCTCCGCAGCGA
CCAAAAAGAAGAGCGCGGGCGGCGGTGGTGGAGGAGGATTGGGAGGAAGA
GGAGAAGGCGGAGGAGGCACAAAATCAACTGGAGGCAAGAAGGCTGGTGC
TGCTGCGGTGGCGGGGCGCAAGCGACGCAAGGTAGATAATGACAACGACG
ACGATGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGGAAGAG
GACGAGGAGAACAGCGAGGAGGAAAGGGAAGGAGGCGGCAGAGGCCATCG
CAGGAGCTGGGGCAAGGGGAAAACCGCTGCAAAAGAGAAAGGGAAAGGGA
AAGCCAAGTCCCTGACGAGCGTGGGCAGTAGCAAGGTGGACAAGGTCCTG
GAGGAGGTGCGGCTGCTGATGCTCCGTTCCCGGCGTTATGACGCGCCTAA
CCCTTCCCTGGCTGAATTGGGAATAACGACTGTGCGAGAGGTATCGGACA
TGGCGCCGGAGGGTGTGTTGTGGGAGATTGAGCAGACGGTATTGCAGGTG
GCAGGGATGATTTTGAGGGGAGAGGGCTTTAGCTATCAGGTCCCCACGAG
GTCGGCGACGAATCAGTTGTACATAGCGGAATTGGATCGGATTGTGTTGA
GTGACAAGGTGGCGACGCGAACATTTCTCAATCCGAGGGAGGTGAGGAAG
ACAGCGATTACCACGCGAATCTTGCAGTTGGTGCATGAGGTTTTGAGTAA
GGGGATTCATATCACGAAGCGCGATATGTTTTATACGGACGTGAAGCTGT
TTAAAGACCAGAAGGAGAGTGATGTGGTGCTTGATGATGTTGCTTGTATG
CTGGGCTGCACCCGGTCGTGTTTGAATGTGGTGGCGTCAGAGAAAGGGTT
GGTGGTTGGGCGAGTGCAGTTTGAGGAGGACGGCGATTATATCGATTGTA
CGAGGATGGGGGTGGGGGGAAAGGCCATCCCGCCTTACATTGACAAGATT
GCTAAGATACAGAGTGACGCCAAGTTCATCCTTTTGGTGGAAAAAGAGGC
CGCGTACATGCGCCTGGCGGAGGACAGATTCTATAACAAGTACCCATGTA
TCGTAATCACGGCCAAGGGACAGCCGGACGTGGCCACGCGCTTGTTTCTC
AAGAAGCTAAAGATGGAGTTGCACATCCCGGTCTTGGGGCTCGTGGATTC
CGACCCTTACGGCCTCAAAATCCTAAGCGTGTACATGACCGGCTCGAAAA
ATATGAGCTACGATTCCGCGTCGCTCACCACCTCGGACATCAAGTGGTTA
GGGGTCCGGCCGTCAGACCTGGATAAATATAACATTCCCGCACAATGCCG
ACTAGATATGACGGAGCACGACATGCGGACGGGCCGGCAGCTGCTGCAGG
AAGAATTCATCCAGAAGAACCCGGAGTGGGTGAAGGAATTGGAACTTATG
CTCAAGATGAAGAAAAAGGCGGAGATCCAGGCACTGTCGGCGTTTGGCTT
TCAGTACATTACCGAGGACTATTTGCCGCGCAAGCTCGAAAAGGGCGATT
GGATTTAAGGCCTTGCTTCCCGCCCTCCTCCCCCTCGCCTTTACTGATGT
GTGTATATTTCTCTGACAGGACAGAGATGACGGAGCCGAGACGCGACCAA
GTGGGGGACAAACAGATAAAGAAGTGGAAACATGAATGAGAAGGAGAAAG
GCTGGCTGAGCATGACACGGATATGCTGAAAAACAAAAGATATACATATG
AAAACAAAGGATGAAACAGCGTGATTGACCAAGGAAAAAAAATTTGGCAA
GCAAGGTTATACCACAATGATAACAGACGATGTCTTAAGGGGAAGCAGCA
TTAAAAAAAAGAACTGAAAAGAAAACCCGGGCATAAAGCTCTGTCAGTC
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protein sequence of NO10G02420.1

>NO10G02420.1-protein ID=NO10G02420.1-protein|Name=NO10G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MLRRRVQDDISSSEEEEEEEEVDEKEEDDVDVDEKEDDSDFEPVSDGRGK
FKANSKPKAKAIPKRPSTASARSKKNLSAAASAATKKKSAGGGGGGGLGG
RGEGGGGTKSTGGKKAGAAAVAGRKRRKVDNDNDDDEEEEEEEEEEEEEE
EDEENSEEEREGGGRGHRRSWGKGKTAAKEKGKGKAKSLTSVGSSKVDKV
LEEVRLLMLRSRRYDAPNPSLAELGITTVREVSDMAPEGVLWEIEQTVLQ
VAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVR
KTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVAC
MLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDK
IAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLF
LKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKW
LGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELEL
MLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI*
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Synonyms
Publications