NO10G02420.1, NO10G02420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02420.1
Unique NameNO10G02420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2149
Alignment locationchr10:660013..662161 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:660013..662161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G02420.1 vs.
Match: EWM25406.1 (dna topoisomerase 6 subunit a [Nannochloropsis gaditana])

HSP 1 Score: 749.6 bits (1934), Expect = 7.400e-213
Identity = 445/596 (74.66%), Postives = 491/596 (82.38%), Query Frame = 0
Query:    1 MLRRR-VQDDISSSEEEEEEEEVDEKEEDDVDVDEKEDDSDFEPVSDGRGKFKANSKPKAKAIPKRPSTASARSKKNLSAAASAATKKKSAGGGGGGGLGGRGEGGGGTKSTGGKKAGAA--------AVAGRKRRKVDNDNDDDEE-EEEEEEEEEEEEEDEENSEEEREGGGRGHRRSWGKGKTAAKEKGKGKAKSLTSVGSSKVDKVLEEVRLLMLRSRRYDAPNPSLAELGITTVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
            M+RRR V+DD SS  EEEEEEEV   +E+D       +DSDF P       ++A ++   K     P  + ARS    +  +SA+ KK  +     G   G+  GG GT     +KA AA         +AGRKRRK++ + DD+EE +EE+E +E  +E++EE+ ++E EG  RG       GK   K KG     ++T VG+SKVDKVLEEVR LMLRSRR DAPNP+LA+LGITTVREVSDMAPEGVL+EIE+T+L  AGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATR FLNPREVRKTAITTRI+QLVHEVLSKGIHITKRDMFYTDVKLF+DQK+SDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGD+IDCTRMGVGGKAIPPY+DKIA IQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLK ELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKY IP QCRLDMT+HDMRTGRQLLQE+FIQKNPEWVKEL+LMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI
Sbjct:    1 MVRRRSVKDDTSS--EEEEEEEVSSSDEED-------EDSDFSP-------WEATTRKGKKITKAAPEQSIARSHTAATLTSSASKKKSPSQPRSLGKKEGKRGGGHGTVP---RKAAAARTGTTSPGTLAGRKRRKLEREEDDEEEGKEEDEAKEVYDEDEEEDDDDEPEGKSRGGSTRRMTGKNQRKTKG----LNVTGVGNSKVDKVLEEVRQLMLRSRRDDAPNPTLADLGITTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573          
The following BLAST results are available for this feature:
BLAST of NO10G02420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25406.17.400e-21374.66dna topoisomerase 6 subunit a [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02420NO10G02420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02420.1NO10G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02420.1.cds1NO10G02420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02420.1 ID=NO10G02420.1|Name=NO10G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2149bp
ACAGAATCTGCATCTTCGTCTATCCTGCTAGCCGAGCAATTGAAGCCATG
CTGCGCCGCCGTGTTCAAGATGACATCAGCAGCTCCGAAGAAGAAGAGGA
GGAGGAGGAGGTTGACGAGAAGGAGGAGGATGATGTCGATGTAGACGAGA
AGGAGGACGACAGTGATTTTGAGCCAGTCAGCGATGGAAGGGGTAAGTTC
AAGGCCAATAGTAAGCCCAAAGCCAAGGCAATCCCGAAGAGGCCTTCAAC
GGCCAGCGCGCGGTCGAAGAAGAATTTGAGTGCCGCAGCCTCCGCAGCGA
CCAAAAAGAAGAGCGCGGGCGGCGGTGGTGGAGGAGGATTGGGAGGAAGA
GGAGAAGGCGGAGGAGGCACAAAATCAACTGGAGGCAAGAAGGCTGGTGC
TGCTGCGGTGGCGGGGCGCAAGCGACGCAAGGTAGATAATGACAACGACG
ACGATGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGGAAGAG
GACGAGGAGAACAGCGAGGAGGAAAGGGAAGGAGGCGGCAGAGGCCATCG
CAGGAGCTGGGGCAAGGGGAAAACCGCTGCAAAAGAGAAAGGGAAAGGGA
AAGCCAAGTCCCTGACGAGCGTGGGCAGTAGCAAGGTGGACAAGGTCCTG
GAGGAGGTGCGGCTGCTGATGCTCCGTTCCCGGCGTTATGACGCGCCTAA
CCCTTCCCTGGCTGAATTGGGAATAACGACTGTGCGAGAGGTATCGGACA
TGGCGCCGGAGGGTGTGTTGTGGGAGATTGAGCAGACGGTATTGCAGGTG
GCAGGGATGATTTTGAGGGGAGAGGGCTTTAGCTATCAGGTCCCCACGAG
GTCGGCGACGAATCAGTTGTACATAGCGGAATTGGATCGGATTGTGTTGA
GTGACAAGGTGGCGACGCGAACATTTCTCAATCCGAGGGAGGTGAGGAAG
ACAGCGATTACCACGCGAATCTTGCAGTTGGTGCATGAGGTTTTGAGTAA
GGGGATTCATATCACGAAGCGCGATATGTTTTATACGGACGTGAAGCTGT
TTAAAGACCAGAAGGAGAGTGATGTGGTGCTTGATGATGTTGCTTGTATG
CTGGGCTGCACCCGGTCGTGTTTGAATGTGGTGGCGTCAGAGAAAGGGTT
GGTGGTTGGGCGAGTGCAGTTTGAGGAGGACGGCGATTATATCGATTGTA
CGAGGATGGGGGTGGGGGGAAAGGCCATCCCGCCTTACATTGACAAGATT
GCTAAGATACAGAGTGACGCCAAGTTCATCCTTTTGGTGGAAAAAGAGGC
CGCGTACATGCGCCTGGCGGAGGACAGATTCTATAACAAGTACCCATGTA
TCGTAATCACGGCCAAGGGACAGCCGGACGTGGCCACGCGCTTGTTTCTC
AAGAAGCTAAAGATGGAGTTGCACATCCCGGTCTTGGGGCTCGTGGATTC
CGACCCTTACGGCCTCAAAATCCTAAGCGTGTACATGACCGGCTCGAAAA
ATATGAGCTACGATTCCGCGTCGCTCACCACCTCGGACATCAAGTGGTTA
GGGGTCCGGCCGTCAGACCTGGATAAATATAACATTCCCGCACAATGCCG
ACTAGATATGACGGAGCACGACATGCGGACGGGCCGGCAGCTGCTGCAGG
AAGAATTCATCCAGAAGAACCCGGAGTGGGTGAAGGAATTGGAACTTATG
CTCAAGATGAAGAAAAAGGCGGAGATCCAGGCACTGTCGGCGTTTGGCTT
TCAGTACATTACCGAGGACTATTTGCCGCGCAAGCTCGAAAAGGGCGATT
GGATTTAAGGCCTTGCTTCCCGCCCTCCTCCCCCTCGCCTTTACTGATGT
GTGTATATTTCTCTGACAGGACAGAGATGACGGAGCCGAGACGCGACCAA
GTGGGGGACAAACAGATAAAGAAGTGGAAACATGAATGAGAAGGAGAAAG
GCTGGCTGAGCATGACACGGATATGCTGAAAAACAAAAGATATACATATG
AAAACAAAGGATGAAACAGCGTGATTGACCAAGGAAAAAAAATTTGGCAA
GCAAGGTTATACCACAATGATAACAGACGATGTCTTAAGGGGAAGCAGCA
TTAAAAAAAAGAACTGAAAAGAAAACCCGGGCATAAAGCTCTGTCAGTC
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protein sequence of NO10G02420.1

>NO10G02420.1-protein ID=NO10G02420.1-protein|Name=NO10G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MLRRRVQDDISSSEEEEEEEEVDEKEEDDVDVDEKEDDSDFEPVSDGRGK
FKANSKPKAKAIPKRPSTASARSKKNLSAAASAATKKKSAGGGGGGGLGG
RGEGGGGTKSTGGKKAGAAAVAGRKRRKVDNDNDDDEEEEEEEEEEEEEE
EDEENSEEEREGGGRGHRRSWGKGKTAAKEKGKGKAKSLTSVGSSKVDKV
LEEVRLLMLRSRRYDAPNPSLAELGITTVREVSDMAPEGVLWEIEQTVLQ
VAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVR
KTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVAC
MLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDK
IAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLF
LKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKW
LGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELEL
MLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI*
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mRNA from alignment at chr10:660013..662161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02420.1 ID=NO10G02420.1|Name=NO10G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2149bp|location=Sequence derived from alignment at chr10:660013..662161- (Nannochloropsis oceanica)
ACAGAATCTGCATCTTCGTCTATCCTGCTAGCCGAGCAATTGAAGCCATG CTGCGCCGCCGTGTTCAAGATGACATCAGCAGCTCCGAAGAAGAAGAGGA GGAGGAGGAGGTTGACGAGAAGGAGGAGGATGATGTCGATGTAGACGAGA AGGAGGACGACAGTGATTTTGAGCCAGTCAGCGATGGAAGGGGTAAGTTC AAGGCCAATAGTAAGCCCAAAGCCAAGGCAATCCCGAAGAGGCCTTCAAC GGCCAGCGCGCGGTCGAAGAAGAATTTGAGTGCCGCAGCCTCCGCAGCGA CCAAAAAGAAGAGCGCGGGCGGCGGTGGTGGAGGAGGATTGGGAGGAAGA GGAGAAGGCGGAGGAGGCACAAAATCAACTGGAGGCAAGAAGGCTGGTGC TGCTGCGGTGGCGGGGCGCAAGCGACGCAAGGTAGATAATGACAACGACG ACGATGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGGAAGAG GACGAGGAGAACAGCGAGGAGGAAAGGGAAGGAGGCGGCAGAGGCCATCG CAGGAGCTGGGGCAAGGGGAAAACCGCTGCAAAAGAGAAAGGGAAAGGGA AAGCCAAGTCCCTGACGAGCGTGGGCAGTAGCAAGGTGGACAAGGTCCTG GAGGAGGTGCGGCTGCTGATGCTCCGTTCCCGGCGTTATGACGCGCCTAA CCCTTCCCTGGCTGAATTGGGAATAACGACTGTGCGAGAGGTATCGGACA TGGCGCCGGAGGGTGTGTTGTGGGAGATTGAGCAGACGGTATTGCAGGTG GCAGGGATGATTTTGAGGGGAGAGGGCTTTAGCTATCAGGTCCCCACGAG GTCGGCGACGAATCAGTTGTACATAGCGGAATTGGATCGGATTGTGTTGA GTGACAAGGTGGCGACGCGAACATTTCTCAATCCGAGGGAGGTGAGGAAG ACAGCGATTACCACGCGAATCTTGCAGTTGGTGCATGAGGTTTTGAGTAA GGGGATTCATATCACGAAGCGCGATATGTTTTATACGGACGTGAAGCTGT TTAAAGACCAGAAGGAGAGTGATGTGGTGCTTGATGATGTTGCTTGTATG CTGGGCTGCACCCGGTCGTGTTTGAATGTGGTGGCGTCAGAGAAAGGGTT GGTGGTTGGGCGAGTGCAGTTTGAGGAGGACGGCGATTATATCGATTGTA CGAGGATGGGGGTGGGGGGAAAGGCCATCCCGCCTTACATTGACAAGATT GCTAAGATACAGAGTGACGCCAAGTTCATCCTTTTGGTGGAAAAAGAGGC CGCGTACATGCGCCTGGCGGAGGACAGATTCTATAACAAGTACCCATGTA TCGTAATCACGGCCAAGGGACAGCCGGACGTGGCCACGCGCTTGTTTCTC AAGAAGCTAAAGATGGAGTTGCACATCCCGGTCTTGGGGCTCGTGGATTC CGACCCTTACGGCCTCAAAATCCTAAGCGTGTACATGACCGGCTCGAAAA ATATGAGCTACGATTCCGCGTCGCTCACCACCTCGGACATCAAGTGGTTA GGGGTCCGGCCGTCAGACCTGGATAAATATAACATTCCCGCACAATGCCG ACTAGATATGACGGAGCACGACATGCGGACGGGCCGGCAGCTGCTGCAGG AAGAATTCATCCAGAAGAACCCGGAGTGGGTGAAGGAATTGGAACTTATG CTCAAGATGAAGAAAAAGGCGGAGATCCAGGCACTGTCGGCGTTTGGCTT TCAGTACATTACCGAGGACTATTTGCCGCGCAAGCTCGAAAAGGGCGATT GGATTTAAGGCCTTGCTTCCCGCCCTCCTCCCCCTCGCCTTTACTGATGT GTGTATATTTCTCTGACAGGACAGAGATGACGGAGCCGAGACGCGACCAA GTGGGGGACAAACAGATAAAGAAGTGGAAACATGAATGAGAAGGAGAAAG GCTGGCTGAGCATGACACGGATATGCTGAAAAACAAAAGATATACATATG AAAACAAAGGATGAAACAGCGTGATTGACCAAGGAAAAAAAATTTGGCAA GCAAGGTTATACCACAATGATAACAGACGATGTCTTAAGGGGAAGCAGCA TTAAAAAAAAGAACTGAAAAGAAAACCCGGGCATAAAGCTCTGTCAGTC
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Coding sequence (CDS) from alignment at chr10:660013..662161-

>NO10G02420.1 ID=NO10G02420.1|Name=NO10G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=1761bp|location=Sequence derived from alignment at chr10:660013..662161- (Nannochloropsis oceanica)
ATGCTGCGCCGCCGTGTTCAAGATGACATCAGCAGCTCCGAAGAAGAAGA
GGAGGAGGAGGAGGTTGACGAGAAGGAGGAGGATGATGTCGATGTAGACG
AGAAGGAGGACGACAGTGATTTTGAGCCAGTCAGCGATGGAAGGGGTAAG
TTCAAGGCCAATAGTAAGCCCAAAGCCAAGGCAATCCCGAAGAGGCCTTC
AACGGCCAGCGCGCGGTCGAAGAAGAATTTGAGTGCCGCAGCCTCCGCAG
CGACCAAAAAGAAGAGCGCGGGCGGCGGTGGTGGAGGAGGATTGGGAGGA
AGAGGAGAAGGCGGAGGAGGCACAAAATCAACTGGAGGCAAGAAGGCTGG
TGCTGCTGCGGTGGCGGGGCGCAAGCGACGCAAGGTAGATAATGACAACG
ACGACGATGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGGAA
GAGGACGAGGAGAACAGCGAGGAGGAAAGGGAAGGAGGCGGCAGAGGCCA
TCGCAGGAGCTGGGGCAAGGGGAAAACCGCTGCAAAAGAGAAAGGGAAAG
GGAAAGCCAAGTCCCTGACGAGCGTGGGCAGTAGCAAGGTGGACAAGGTC
CTGGAGGAGGTGCGGCTGCTGATGCTCCGTTCCCGGCGTTATGACGCGCC
TAACCCTTCCCTGGCTGAATTGGGAATAACGACTGTGCGAGAGGTATCGG
ACATGGCGCCGGAGGGTGTGTTGTGGGAGATTGAGCAGACGGTATTGCAG
GTGGCAGGGATGATTTTGAGGGGAGAGGGCTTTAGCTATCAGGTCCCCAC
GAGGTCGGCGACGAATCAGTTGTACATAGCGGAATTGGATCGGATTGTGT
TGAGTGACAAGGTGGCGACGCGAACATTTCTCAATCCGAGGGAGGTGAGG
AAGACAGCGATTACCACGCGAATCTTGCAGTTGGTGCATGAGGTTTTGAG
TAAGGGGATTCATATCACGAAGCGCGATATGTTTTATACGGACGTGAAGC
TGTTTAAAGACCAGAAGGAGAGTGATGTGGTGCTTGATGATGTTGCTTGT
ATGCTGGGCTGCACCCGGTCGTGTTTGAATGTGGTGGCGTCAGAGAAAGG
GTTGGTGGTTGGGCGAGTGCAGTTTGAGGAGGACGGCGATTATATCGATT
GTACGAGGATGGGGGTGGGGGGAAAGGCCATCCCGCCTTACATTGACAAG
ATTGCTAAGATACAGAGTGACGCCAAGTTCATCCTTTTGGTGGAAAAAGA
GGCCGCGTACATGCGCCTGGCGGAGGACAGATTCTATAACAAGTACCCAT
GTATCGTAATCACGGCCAAGGGACAGCCGGACGTGGCCACGCGCTTGTTT
CTCAAGAAGCTAAAGATGGAGTTGCACATCCCGGTCTTGGGGCTCGTGGA
TTCCGACCCTTACGGCCTCAAAATCCTAAGCGTGTACATGACCGGCTCGA
AAAATATGAGCTACGATTCCGCGTCGCTCACCACCTCGGACATCAAGTGG
TTAGGGGTCCGGCCGTCAGACCTGGATAAATATAACATTCCCGCACAATG
CCGACTAGATATGACGGAGCACGACATGCGGACGGGCCGGCAGCTGCTGC
AGGAAGAATTCATCCAGAAGAACCCGGAGTGGGTGAAGGAATTGGAACTT
ATGCTCAAGATGAAGAAAAAGGCGGAGATCCAGGCACTGTCGGCGTTTGG
CTTTCAGTACATTACCGAGGACTATTTGCCGCGCAAGCTCGAAAAGGGCG
ATTGGATTTAA
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Synonyms
Publications