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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:660013..662161 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02420.1 vs.
Match: EWM25406.1 (dna topoisomerase 6 subunit a [Nannochloropsis gaditana]) HSP 1 Score: 749.6 bits (1934), Expect = 7.400e-213 Identity = 445/596 (74.66%), Postives = 491/596 (82.38%), Query Frame = 0
Query: 1 MLRRR-VQDDISSSEEEEEEEEVDEKEEDDVDVDEKEDDSDFEPVSDGRGKFKANSKPKAKAIPKRPSTASARSKKNLSAAASAATKKKSAGGGGGGGLGGRGEGGGGTKSTGGKKAGAA--------AVAGRKRRKVDNDNDDDEE-EEEEEEEEEEEEEDEENSEEEREGGGRGHRRSWGKGKTAAKEKGKGKAKSLTSVGSSKVDKVLEEVRLLMLRSRRYDAPNPSLAELGITTVREVSDMAPEGVLWEIEQTVLQVAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVRKTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDKIAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELELMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 587
M+RRR V+DD SS EEEEEEEV +E+D +DSDF P ++A ++ K P + ARS + +SA+ KK + G G+ GG GT +KA AA +AGRKRRK++ + DD+EE +EE+E +E +E++EE+ ++E EG RG GK K KG ++T VG+SKVDKVLEEVR LMLRSRR DAPNP+LA+LGITTVREVSDMAPEGVL+EIE+T+L AGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATR FLNPREVRKTAITTRI+QLVHEVLSKGIHITKRDMFYTDVKLF+DQK+SDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGD+IDCTRMGVGGKAIPPY+DKIA IQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLK ELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKY IP QCRLDMT+HDMRTGRQLLQE+FIQKNPEWVKEL+LMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI
Sbjct: 1 MVRRRSVKDDTSS--EEEEEEEVSSSDEED-------EDSDFSP-------WEATTRKGKKITKAAPEQSIARSHTAATLTSSASKKKSPSQPRSLGKKEGKRGGGHGTVP---RKAAAARTGTTSPGTLAGRKRRKLEREEDDEEEGKEEDEAKEVYDEDEEEDDDDEPEGKSRGGSTRRMTGKNQRKTKG----LNVTGVGNSKVDKVLEEVRQLMLRSRRDDAPNPTLADLGITTVREVSDMAPEGVLFEIEKTILAAAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRAFLNPREVRKTAITTRIMQLVHEVLSKGIHITKRDMFYTDVKLFRDQKDSDVVLDDVACMLGCTRSCLNVVASEKGLVVGRVQFEEDGDFIDCTRMGVGGKAIPPYVDKIACIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLFLKKLKTELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKWLGVRPSDLDKYGIPPQCRLDMTDHDMRTGRQLLQEDFIQKNPEWVKELQLMLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI 573
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02420.1 ID=NO10G02420.1|Name=NO10G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2149bp ACAGAATCTGCATCTTCGTCTATCCTGCTAGCCGAGCAATTGAAGCCATG CTGCGCCGCCGTGTTCAAGATGACATCAGCAGCTCCGAAGAAGAAGAGGA GGAGGAGGAGGTTGACGAGAAGGAGGAGGATGATGTCGATGTAGACGAGA AGGAGGACGACAGTGATTTTGAGCCAGTCAGCGATGGAAGGGGTAAGTTC AAGGCCAATAGTAAGCCCAAAGCCAAGGCAATCCCGAAGAGGCCTTCAAC GGCCAGCGCGCGGTCGAAGAAGAATTTGAGTGCCGCAGCCTCCGCAGCGA CCAAAAAGAAGAGCGCGGGCGGCGGTGGTGGAGGAGGATTGGGAGGAAGA GGAGAAGGCGGAGGAGGCACAAAATCAACTGGAGGCAAGAAGGCTGGTGC TGCTGCGGTGGCGGGGCGCAAGCGACGCAAGGTAGATAATGACAACGACG ACGATGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGGAAGAG GACGAGGAGAACAGCGAGGAGGAAAGGGAAGGAGGCGGCAGAGGCCATCG CAGGAGCTGGGGCAAGGGGAAAACCGCTGCAAAAGAGAAAGGGAAAGGGA AAGCCAAGTCCCTGACGAGCGTGGGCAGTAGCAAGGTGGACAAGGTCCTG GAGGAGGTGCGGCTGCTGATGCTCCGTTCCCGGCGTTATGACGCGCCTAA CCCTTCCCTGGCTGAATTGGGAATAACGACTGTGCGAGAGGTATCGGACA TGGCGCCGGAGGGTGTGTTGTGGGAGATTGAGCAGACGGTATTGCAGGTG GCAGGGATGATTTTGAGGGGAGAGGGCTTTAGCTATCAGGTCCCCACGAG GTCGGCGACGAATCAGTTGTACATAGCGGAATTGGATCGGATTGTGTTGA GTGACAAGGTGGCGACGCGAACATTTCTCAATCCGAGGGAGGTGAGGAAG ACAGCGATTACCACGCGAATCTTGCAGTTGGTGCATGAGGTTTTGAGTAA GGGGATTCATATCACGAAGCGCGATATGTTTTATACGGACGTGAAGCTGT TTAAAGACCAGAAGGAGAGTGATGTGGTGCTTGATGATGTTGCTTGTATG CTGGGCTGCACCCGGTCGTGTTTGAATGTGGTGGCGTCAGAGAAAGGGTT GGTGGTTGGGCGAGTGCAGTTTGAGGAGGACGGCGATTATATCGATTGTA CGAGGATGGGGGTGGGGGGAAAGGCCATCCCGCCTTACATTGACAAGATT GCTAAGATACAGAGTGACGCCAAGTTCATCCTTTTGGTGGAAAAAGAGGC CGCGTACATGCGCCTGGCGGAGGACAGATTCTATAACAAGTACCCATGTA TCGTAATCACGGCCAAGGGACAGCCGGACGTGGCCACGCGCTTGTTTCTC AAGAAGCTAAAGATGGAGTTGCACATCCCGGTCTTGGGGCTCGTGGATTC CGACCCTTACGGCCTCAAAATCCTAAGCGTGTACATGACCGGCTCGAAAA ATATGAGCTACGATTCCGCGTCGCTCACCACCTCGGACATCAAGTGGTTA GGGGTCCGGCCGTCAGACCTGGATAAATATAACATTCCCGCACAATGCCG ACTAGATATGACGGAGCACGACATGCGGACGGGCCGGCAGCTGCTGCAGG AAGAATTCATCCAGAAGAACCCGGAGTGGGTGAAGGAATTGGAACTTATG CTCAAGATGAAGAAAAAGGCGGAGATCCAGGCACTGTCGGCGTTTGGCTT TCAGTACATTACCGAGGACTATTTGCCGCGCAAGCTCGAAAAGGGCGATT GGATTTAAGGCCTTGCTTCCCGCCCTCCTCCCCCTCGCCTTTACTGATGT GTGTATATTTCTCTGACAGGACAGAGATGACGGAGCCGAGACGCGACCAA GTGGGGGACAAACAGATAAAGAAGTGGAAACATGAATGAGAAGGAGAAAG GCTGGCTGAGCATGACACGGATATGCTGAAAAACAAAAGATATACATATG AAAACAAAGGATGAAACAGCGTGATTGACCAAGGAAAAAAAATTTGGCAA GCAAGGTTATACCACAATGATAACAGACGATGTCTTAAGGGGAAGCAGCA TTAAAAAAAAGAACTGAAAAGAAAACCCGGGCATAAAGCTCTGTCAGTC back to topprotein sequence of NO10G02420.1 >NO10G02420.1-protein ID=NO10G02420.1-protein|Name=NO10G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp MLRRRVQDDISSSEEEEEEEEVDEKEEDDVDVDEKEDDSDFEPVSDGRGK FKANSKPKAKAIPKRPSTASARSKKNLSAAASAATKKKSAGGGGGGGLGG RGEGGGGTKSTGGKKAGAAAVAGRKRRKVDNDNDDDEEEEEEEEEEEEEE EDEENSEEEREGGGRGHRRSWGKGKTAAKEKGKGKAKSLTSVGSSKVDKV LEEVRLLMLRSRRYDAPNPSLAELGITTVREVSDMAPEGVLWEIEQTVLQ VAGMILRGEGFSYQVPTRSATNQLYIAELDRIVLSDKVATRTFLNPREVR KTAITTRILQLVHEVLSKGIHITKRDMFYTDVKLFKDQKESDVVLDDVAC MLGCTRSCLNVVASEKGLVVGRVQFEEDGDYIDCTRMGVGGKAIPPYIDK IAKIQSDAKFILLVEKEAAYMRLAEDRFYNKYPCIVITAKGQPDVATRLF LKKLKMELHIPVLGLVDSDPYGLKILSVYMTGSKNMSYDSASLTTSDIKW LGVRPSDLDKYNIPAQCRLDMTEHDMRTGRQLLQEEFIQKNPEWVKELEL MLKMKKKAEIQALSAFGFQYITEDYLPRKLEKGDWI* back to topmRNA from alignment at chr10:660013..662161- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02420.1 ID=NO10G02420.1|Name=NO10G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2149bp|location=Sequence derived from alignment at chr10:660013..662161- (Nannochloropsis oceanica) ACAGAATCTGCATCTTCGTCTATCCTGCTAGCCGAGCAATTGAAGCCATG
CTGCGCCGCCGTGTTCAAGATGACATCAGCAGCTCCGAAGAAGAAGAGGA
GGAGGAGGAGGTTGACGAGAAGGAGGAGGATGATGTCGATGTAGACGAGA
AGGAGGACGACAGTGATTTTGAGCCAGTCAGCGATGGAAGGGGTAAGTTC
AAGGCCAATAGTAAGCCCAAAGCCAAGGCAATCCCGAAGAGGCCTTCAAC
GGCCAGCGCGCGGTCGAAGAAGAATTTGAGTGCCGCAGCCTCCGCAGCGA
CCAAAAAGAAGAGCGCGGGCGGCGGTGGTGGAGGAGGATTGGGAGGAAGA
GGAGAAGGCGGAGGAGGCACAAAATCAACTGGAGGCAAGAAGGCTGGTGC
TGCTGCGGTGGCGGGGCGCAAGCGACGCAAGGTAGATAATGACAACGACG
ACGATGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGGAAGAG
GACGAGGAGAACAGCGAGGAGGAAAGGGAAGGAGGCGGCAGAGGCCATCG
CAGGAGCTGGGGCAAGGGGAAAACCGCTGCAAAAGAGAAAGGGAAAGGGA
AAGCCAAGTCCCTGACGAGCGTGGGCAGTAGCAAGGTGGACAAGGTCCTG
GAGGAGGTGCGGCTGCTGATGCTCCGTTCCCGGCGTTATGACGCGCCTAA
CCCTTCCCTGGCTGAATTGGGAATAACGACTGTGCGAGAGGTATCGGACA
TGGCGCCGGAGGGTGTGTTGTGGGAGATTGAGCAGACGGTATTGCAGGTG
GCAGGGATGATTTTGAGGGGAGAGGGCTTTAGCTATCAGGTCCCCACGAG
GTCGGCGACGAATCAGTTGTACATAGCGGAATTGGATCGGATTGTGTTGA
GTGACAAGGTGGCGACGCGAACATTTCTCAATCCGAGGGAGGTGAGGAAG
ACAGCGATTACCACGCGAATCTTGCAGTTGGTGCATGAGGTTTTGAGTAA
GGGGATTCATATCACGAAGCGCGATATGTTTTATACGGACGTGAAGCTGT
TTAAAGACCAGAAGGAGAGTGATGTGGTGCTTGATGATGTTGCTTGTATG
CTGGGCTGCACCCGGTCGTGTTTGAATGTGGTGGCGTCAGAGAAAGGGTT
GGTGGTTGGGCGAGTGCAGTTTGAGGAGGACGGCGATTATATCGATTGTA
CGAGGATGGGGGTGGGGGGAAAGGCCATCCCGCCTTACATTGACAAGATT
GCTAAGATACAGAGTGACGCCAAGTTCATCCTTTTGGTGGAAAAAGAGGC
CGCGTACATGCGCCTGGCGGAGGACAGATTCTATAACAAGTACCCATGTA
TCGTAATCACGGCCAAGGGACAGCCGGACGTGGCCACGCGCTTGTTTCTC
AAGAAGCTAAAGATGGAGTTGCACATCCCGGTCTTGGGGCTCGTGGATTC
CGACCCTTACGGCCTCAAAATCCTAAGCGTGTACATGACCGGCTCGAAAA
ATATGAGCTACGATTCCGCGTCGCTCACCACCTCGGACATCAAGTGGTTA
GGGGTCCGGCCGTCAGACCTGGATAAATATAACATTCCCGCACAATGCCG
ACTAGATATGACGGAGCACGACATGCGGACGGGCCGGCAGCTGCTGCAGG
AAGAATTCATCCAGAAGAACCCGGAGTGGGTGAAGGAATTGGAACTTATG
CTCAAGATGAAGAAAAAGGCGGAGATCCAGGCACTGTCGGCGTTTGGCTT
TCAGTACATTACCGAGGACTATTTGCCGCGCAAGCTCGAAAAGGGCGATT
GGATTTAAGGCCTTGCTTCCCGCCCTCCTCCCCCTCGCCTTTACTGATGT
GTGTATATTTCTCTGACAGGACAGAGATGACGGAGCCGAGACGCGACCAA
GTGGGGGACAAACAGATAAAGAAGTGGAAACATGAATGAGAAGGAGAAAG
GCTGGCTGAGCATGACACGGATATGCTGAAAAACAAAAGATATACATATG
AAAACAAAGGATGAAACAGCGTGATTGACCAAGGAAAAAAAATTTGGCAA
GCAAGGTTATACCACAATGATAACAGACGATGTCTTAAGGGGAAGCAGCA
TTAAAAAAAAGAACTGAAAAGAAAACCCGGGCATAAAGCTCTGTCAGTC back to topCoding sequence (CDS) from alignment at chr10:660013..662161- >NO10G02420.1 ID=NO10G02420.1|Name=NO10G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=1761bp|location=Sequence derived from alignment at chr10:660013..662161- (Nannochloropsis oceanica) ATGCTGCGCCGCCGTGTTCAAGATGACATCAGCAGCTCCGAAGAAGAAGA GGAGGAGGAGGAGGTTGACGAGAAGGAGGAGGATGATGTCGATGTAGACG AGAAGGAGGACGACAGTGATTTTGAGCCAGTCAGCGATGGAAGGGGTAAG TTCAAGGCCAATAGTAAGCCCAAAGCCAAGGCAATCCCGAAGAGGCCTTC AACGGCCAGCGCGCGGTCGAAGAAGAATTTGAGTGCCGCAGCCTCCGCAG CGACCAAAAAGAAGAGCGCGGGCGGCGGTGGTGGAGGAGGATTGGGAGGA AGAGGAGAAGGCGGAGGAGGCACAAAATCAACTGGAGGCAAGAAGGCTGG TGCTGCTGCGGTGGCGGGGCGCAAGCGACGCAAGGTAGATAATGACAACG ACGACGATGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAGGAA GAGGACGAGGAGAACAGCGAGGAGGAAAGGGAAGGAGGCGGCAGAGGCCA TCGCAGGAGCTGGGGCAAGGGGAAAACCGCTGCAAAAGAGAAAGGGAAAG GGAAAGCCAAGTCCCTGACGAGCGTGGGCAGTAGCAAGGTGGACAAGGTC CTGGAGGAGGTGCGGCTGCTGATGCTCCGTTCCCGGCGTTATGACGCGCC TAACCCTTCCCTGGCTGAATTGGGAATAACGACTGTGCGAGAGGTATCGG ACATGGCGCCGGAGGGTGTGTTGTGGGAGATTGAGCAGACGGTATTGCAG GTGGCAGGGATGATTTTGAGGGGAGAGGGCTTTAGCTATCAGGTCCCCAC GAGGTCGGCGACGAATCAGTTGTACATAGCGGAATTGGATCGGATTGTGT TGAGTGACAAGGTGGCGACGCGAACATTTCTCAATCCGAGGGAGGTGAGG AAGACAGCGATTACCACGCGAATCTTGCAGTTGGTGCATGAGGTTTTGAG TAAGGGGATTCATATCACGAAGCGCGATATGTTTTATACGGACGTGAAGC TGTTTAAAGACCAGAAGGAGAGTGATGTGGTGCTTGATGATGTTGCTTGT ATGCTGGGCTGCACCCGGTCGTGTTTGAATGTGGTGGCGTCAGAGAAAGG GTTGGTGGTTGGGCGAGTGCAGTTTGAGGAGGACGGCGATTATATCGATT GTACGAGGATGGGGGTGGGGGGAAAGGCCATCCCGCCTTACATTGACAAG ATTGCTAAGATACAGAGTGACGCCAAGTTCATCCTTTTGGTGGAAAAAGA GGCCGCGTACATGCGCCTGGCGGAGGACAGATTCTATAACAAGTACCCAT GTATCGTAATCACGGCCAAGGGACAGCCGGACGTGGCCACGCGCTTGTTT CTCAAGAAGCTAAAGATGGAGTTGCACATCCCGGTCTTGGGGCTCGTGGA TTCCGACCCTTACGGCCTCAAAATCCTAAGCGTGTACATGACCGGCTCGA AAAATATGAGCTACGATTCCGCGTCGCTCACCACCTCGGACATCAAGTGG TTAGGGGTCCGGCCGTCAGACCTGGATAAATATAACATTCCCGCACAATG CCGACTAGATATGACGGAGCACGACATGCGGACGGGCCGGCAGCTGCTGC AGGAAGAATTCATCCAGAAGAACCCGGAGTGGGTGAAGGAATTGGAACTT ATGCTCAAGATGAAGAAAAAGGCGGAGATCCAGGCACTGTCGGCGTTTGG CTTTCAGTACATTACCGAGGACTATTTGCCGCGCAAGCTCGAAAAGGGCG ATTGGATTTAA back to top
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