NO10G01240, NO10G01240 (gene) Nannochloropsis oceanica

Overview
NameNO10G01240
Unique NameNO10G01240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1882
Alignment locationchr10:367358..369239 -

Link to JBrowse

Properties
Property NameValue
DescriptionRibokinase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:367358..369239 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0016301kinase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR029056Ribokinase-like
IPR011611PfkB_dom
IPR002139Ribokinase
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0005975carbohydrate metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
GO:0005622intracellular
Homology
BLAST of NO10G01240 vs. NCBI_GenBank
Match: EWM25391.1 (ribokinase [Nannochloropsis gaditana])

HSP 1 Score: 356.7 bits (914), Expect = 6.900e-95
Identity = 182/272 (66.91%), Postives = 217/272 (79.78%), Query Frame = 0
Query:    8 VVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLSRGV 280
            +VCVGSLN+DL CYL  +FP PG T+ G   +TC GGKGGNQAVMAARLGAPT+MVG VG D++GNT+REA   +GV  + L + ADG +TGTA ILVNG G+NMII+ AGANG+LTP DVQAAE  IA AAV+MVQ+E+P E + EALRLA+AH+VFSILNPAPAP G L QE L+ ASLVCPNETELA+LTQ P  T+ E++AAAHRLR MGAA VLVTLG +G LL+T ++      L PS +VE VVDTSGAGDC+IGSLAA+LS G+
Sbjct:    9 IVCVGSLNVDLFCYLHDKFPEPGRTLQGSHSATCCGGKGGNQAVMAARLGAPTSMVGMVGRDVFGNTLREALIHDGVSIKPLREAADGTSTGTAQILVNGRGENMIIITAGANGKLTPTDVQAAESDIAAAAVVMVQLEVPLEATREALRLARAHEVFSILNPAPAPRGGLDQELLSLASLVCPNETELAVLTQKPAKTLSEIEAAAHRLRGMGAARVLVTLGERGTLLVTEKDGEDHVLLTPSPKVEMVVDTSGAGDCFIGSLAAYLSSGM 280          
BLAST of NO10G01240 vs. NCBI_GenBank
Match: XP_019623190.1 (PREDICTED: ribokinase-like isoform X1 [Branchiostoma belcheri])

HSP 1 Score: 230.3 bits (586), Expect = 7.400e-57
Identity = 131/269 (48.70%), Postives = 180/269 (66.91%), Query Frame = 0
Query:    8 VVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLS 277
            VV VGS N+DL+ Y+  + P PGET+HG +FS   GGKG NQ VMAARLGA TAMV +VG+D++G+   + F+ NGV+   +  T +  +TG A I VN +GQN II+++GAN +LT ADV+  E VI QA VL+ Q+EI  ETS EALR+ K H V +ILNPAPA +  L  E    + + CPNETE  ILT LPV T  E + AA  L + G   V++TLG +G L  +  + ++ G  +P+++V   VDT+GAGD ++GSLA +++
Sbjct:    6 VVVVGSCNMDLISYV-SRLPKPGETIHGNKFSLGFGGKGANQCVMAARLGAATAMVAKVGDDVFGSNFIQNFKDNGVNVDNVEVTKEA-STGVAPIAVNEDGQNSIIIVSGANLKLTAADVKEHESVITQAKVLICQLEIQPETSLEALRIGKQHGVTTILNPAPA-EASLDPELYKLSDIFCPNETEAEILTGLPVTTAEEAEKAADVLLDKGCEKVIITLGEKGCLCKS--SVSEKGIHVPARKVS-PVDTTGAGDAFVGSLAYYMA 268          
BLAST of NO10G01240 vs. NCBI_GenBank
Match: WP_014431451.1 (ribokinase [Caldilinea aerophila] >BAL98209.1 ribokinase [Caldilinea aerophila DSM 14535 = NBRC 104270])

HSP 1 Score: 225.3 bits (573), Expect = 2.400e-55
Identity = 122/272 (44.85%), Postives = 181/272 (66.54%), Query Frame = 0
Query:    8 VVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLSRGV 280
            +  VGS+N+D+  Y+  +FP PGET+HG RF+T  GGKG NQAVMAARLGA  +MVGR+G+D++G+ +R   E  G+ T + ++ + G+++G A I ++ +GQN IIVI GANG +T  DV+ A+  I  A VL+ QME+P E +  ALR+A+   V +I N AP     + +E    + + CPNE+E  +LT +PV T+ + + AA  +   GA + L+TLGAQG L +TA+      + +P+ RV + VDT+GAGD ++GSLA FL+ G+
Sbjct:    6 ICVVGSINLDMNAYV-ERFPRPGETLHGRRFTTGYGGKGANQAVMAARLGAKVSMVGRIGDDIFGHDMRRNLESEGIRTDF-VRESKGVSSGVAVITIDEQGQNQIIVIPGANGLVTAVDVEEAQAAITGAQVLLCQMEVPMEANLAALRIARNAGVTTIFNSAPV-SSEVPEEVYQLSDIFCPNESEAELLTGVPVHTLDDARLAASMIVTRGARAALITLGAQGCLYVTADQE----EHVPAPRV-KAVDTTGAGDAFVGSLAHFLAAGL 269          
BLAST of NO10G01240 vs. NCBI_GenBank
Match: XP_001742353.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ92591.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 216.5 bits (550), Expect = 1.100e-52
Identity = 126/277 (45.49%), Postives = 174/277 (62.82%), Query Frame = 0
Query:    1 MMNRRCGVVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLSR 278
            M   +  VV VGS N DL+ Y+  + P PGET+HG  F    GGKG NQ VM+A+LGA TAMV RVG+D++G    E ++  GVD ++ +  ++  +TG A I+V+ +GQN II++ GAN +LTPA V  A  +I  A VL+VQ EIP E+S  ALR+A+   V SI N AP  + R S + +   S+VC NETE  + T + V T+ E + A+  L   GA  VL+TLG+QG L MT +   Q     P+  VE  +DTSGAGDC+IG+LA  +++
Sbjct:    1 MAEAKAEVVVVGSSNTDLIAYM-DRMPRPGETLHGTDFKQGFGGKGANQCVMSAKLGAQTAMVSRVGSDVFGKETIENYQRQGVDVQF-VSVSETASTGVAPIMVDSKGQNSIIIVPGANNELTPAMVDDARALIQSAKVLLVQNEIPLESSLAALRIAREAGVTSIFNIAPGIE-RPSTDCIVLPSIVCLNETETTLATGMEVNTLEEAKQASQHLLNTGAEGVLLTLGSQGCLYMTKDTCVQE----PAMTVE-AIDTSGAGDCFIGTLACSMAQ 269          
BLAST of NO10G01240 vs. NCBI_GenBank
Match: WP_090754743.1 (ribokinase [Paracoccus chinensis] >SDL11402.1 ribokinase [Paracoccus chinensis])

HSP 1 Score: 214.9 bits (546), Expect = 3.200e-52
Identity = 128/271 (47.23%), Postives = 175/271 (64.58%), Query Frame = 0
Query:    8 VVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLSRG 279
            +  +GS N+DL+  +  + P PGET+ G  F+T  GGKG NQAV AARLG+   MV RVG+D +G  +       G+D  +  + A G A G A I V+  G+N+I+++AGANG LTPADV AA + +A   ++++Q+E+P ET + A++LA+   V +ILNPAPA  G L    L   +  CPNETELA+LT LPV T  E+ AAA  L   G  +V+VTLGA+GA L+TA+    G   IP+ RV R VDT+GAGD +IG+ A FL+ G
Sbjct:    5 IAVIGSNNVDLVTNV-PRMPGPGETLAGSHFATHFGGKGANQAVAAARLGSQVTMVTRVGDDSFGGDVLRNLADQGIDLTH-ARVAQGTANGVASIFVDPSGENVIVIVAGANGTLTPADVDAAAEDMATCDLILLQLEVPLETVYHAIKLAQRIGVPAILNPAPAAPG-LDLAQLHGLAWFCPNETELALLTGLPVTTEDEIAAAAQSLFAHGIGNVVVTLGARGARLVTAD----GVTSIPAIRV-RPVDTTGAGDAFIGAFAHFLAAG 267          
BLAST of NO10G01240 vs. NCBI_GenBank
Match: WP_095639167.1 (ribokinase [Paracoccus sp. WN007] >PAU98485.1 ribokinase [Paracoccus sp. WN007])

HSP 1 Score: 214.9 bits (546), Expect = 3.200e-52
Identity = 127/271 (46.86%), Postives = 178/271 (65.68%), Query Frame = 0
Query:    8 VVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLSRG 279
            +  +GS N+DL+  +  + P PGET+ G  F+T  GGKG NQAV AARLG+   MV RVG D +G  + +    +G+D  +  + + G A G A I V+  G+N+I+++AGANG L+PADV AA D +A+  ++++Q+E+P ET + A+R+A    V +ILNPAPA  G L    L   +  CPNE+EL++LT LPV T  E+ AAA  L   G A+V+VTLGA+GA L+T    AQG + IP+ RV R VDT+GAGD +IG+ A FL+ G
Sbjct:    5 IAVIGSNNVDLVTNV-PRMPGPGETLAGAHFATGFGGKGANQAVAAARLGSQVTMVTRVGEDSFGREVLQNLGSHGIDLAH-ARVSRGTANGVASIFVDPSGENVIVIVAGANGTLSPADVDAAADDLARCDLILLQLEVPLETVYHAIRVAARLGVPAILNPAPAAPG-LDLAQLKGLAWFCPNESELSMLTGLPVTTEEEIAAAAQGLLFHGIANVVVTLGARGARLVT----AQGVKAIPAIRV-RPVDTTGAGDAFIGAFAHFLAAG 267          
BLAST of NO10G01240 vs. NCBI_GenBank
Match: WP_011688618.1 (ribokinase [Candidatus Solibacter usitatus] >ABJ87898.1 ribokinase [Candidatus Solibacter usitatus Ellin6076])

HSP 1 Score: 214.2 bits (544), Expect = 5.500e-52
Identity = 129/277 (46.57%), Postives = 168/277 (60.65%), Query Frame = 0
Query:    2 MNRRCGVVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLSRG 279
            M R+  +V +GS NIDL+ Y   QFP PGET+ G  FS   GGKG NQAV A   GA  AMV RVG+DL+G    + F   G+D R+++ TA G+++G A I V   GQN I V+ GAN +L PADV AA DV+A A  L++Q+EIPTET + ALR A+   + +ILNPAP     L+Q  +A A  V PNETE   L   PV  + + Q  A +L + G   V+VTLGA GALL T +     G    +    + +DT+GAGD +IGS A F + G
Sbjct:    1 MRRQPRIVVIGSANIDLVTYT-DQFPRPGETIFGREFSLGFGGKGANQAVAARLCGAEVAMVARVGDDLFGPANIQNFTSRGIDVRHVMTTA-GVSSGVAPIFVESSGQNRIWVVKGANDRLLPADVAAASDVLAGADFLVMQLEIPTETVYYALRFARERGIRTILNPAPGQALDLAQ--IASADYVIPNETEAEALAGTPVHALEDAQRCAQKLLDGGLRRVIVTLGANGALLATHD-----GMHHVAPFPVQPIDTTGAGDAFIGSFACFCAEG 268          
BLAST of NO10G01240 vs. NCBI_GenBank
Match: WP_082839117.1 (ribokinase [Gemmata sp. SH-PL17] >AMV24307.1 Ribokinase [Gemmata sp. SH-PL17])

HSP 1 Score: 213.4 bits (542), Expect = 9.400e-52
Identity = 129/271 (47.60%), Postives = 164/271 (60.52%), Query Frame = 0
Query:    8 VVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLSRG 279
            +  VGS N+DL  Y   + P PGET+H  RF+   GGKG NQAVMAARLGA   +V RVGNDL+G  +       G+DTR +  T DG+ TGTA I V+  G+N I V  GANG L P DV A    I  A VL+ Q E+P ET+  A+R A    V  + NPAPA    +  E    +++ CPNE E A+LT  PV +  E +AAA  L   GA +V+VTLGA+G L+ T     +G   +P+  VE  VDT+GAGD +IGSLA FL+RG
Sbjct:    6 ICVVGSANLDLNTYT-TRLPVPGETLHAHRFTMGYGGKGANQAVMAARLGADVVLVARVGNDLFGRDMLAHLRTEGIDTRRVTST-DGVPTGTAVITVDDAGRNTIAVTPGANGLLAPTDVDATRGAIESARVLVCQQEVPVETNLAAMRFAAGAGVPVVFNPAPA-STTIPAEAYRLSTVFCPNEHEAAVLTGKPVESPEEAEAAARELMARGAHNVVVTLGARGCLVAT----PRGMTALPAPAVE-AVDTTGAGDAFIGSLAFFLARG 268          
BLAST of NO10G01240 vs. NCBI_GenBank
Match: WP_070267546.1 (ribokinase [Duganella sp. HH101] >OFA06428.1 ribokinase [Duganella sp. HH101])

HSP 1 Score: 213.0 bits (541), Expect = 1.200e-51
Identity = 128/280 (45.71%), Postives = 176/280 (62.86%), Query Frame = 0
Query:    8 VVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLSRGVRQREERAF 288
            VV VGSLN+DL+ +   + P+ GET+HG  ++T  GGKG NQAV  ARLG P A+VG+ G D YG+ +  A   NGVD R++ +T D  ATG A I+V+ +GQN I++ AGANG L PADV AA ++IA A +L+VQ+E+P     +ALRLA A  V ++LNPAPA    L   F     ++ PNE+E ++LT + V  +P    AA +LR  GA  VLVTL  +G +L+       G + +P++ V   VDT+ AGD +IG+LA  L  G+   E  AF
Sbjct:   15 VVVVGSLNMDLV-FRVPRVPAAGETLHGHGYTTSPGGKGANQAVACARLGCPVALVGQAGRDGYGDDLCAALSANGVDIRHVRRTGD--ATGVAMIMVDDQGQNRIVLAAGANGALRPADVDAAGELIAGAGLLIVQLEVPAAAVLQALRLAAAAGVPALLNPAPAQ--ALPDPFWPLIDILVPNESEASLLTGIAVTDVPSAYQAAQQLRARGARRVLVTLSDKGVVLLD----ELGPRHLPARAVS-AVDTTAAGDTFIGALATGLHEGLTLDEAAAF 284          
BLAST of NO10G01240 vs. NCBI_GenBank
Match: XP_007665247.1 (PREDICTED: ribokinase [Ornithorhynchus anatinus])

HSP 1 Score: 212.2 bits (539), Expect = 2.100e-51
Identity = 123/269 (45.72%), Postives = 175/269 (65.06%), Query Frame = 0
Query:    8 VVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLS 277
            VV VGS   DL+  L  + P PGET+HG +F    GGKG NQ V AARLGA T+MV +VG D +GN   E F+ NG+ T +  +T D  +TGTA ILVN EGQN+I+++AGAN  L   D++ A DVI++A V++ Q+EI   TS EAL++A+A  V ++ NPAPA    L  +F   + + C NETE  ILT L VG+  +   A   L E G   V++T+GA+G +L++ E+     + IP+++V + VDT+GAGD ++G+LA +L+
Sbjct:    9 VVVVGSCMTDLVS-LTARLPKPGETIHGHKFFIGFGGKGANQCVQAARLGAETSMVCKVGKDSFGNDYLENFKQNGISTEFAHQTKDA-STGTASILVNNEGQNVIVIVAGANLLLDFQDLKKAADVISKAKVMVCQLEIAPATSLEALKMARASGVKTLFNPAPA-IADLDPQFYTLSDVFCCNETETEILTGLQVGSPTDAGKAGSVLLERGCRVVIITMGAEGCVLVSGEDPVP--KHIPTEKVIKPVDTTGAGDSFVGALAFYLA 272          
The following BLAST results are available for this feature:
BLAST of NO10G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25391.16.900e-9566.91ribokinase [Nannochloropsis gaditana][more]
XP_019623190.17.400e-5748.70PREDICTED: ribokinase-like isoform X1 [Branchiosto... [more]
WP_014431451.12.400e-5544.85ribokinase [Caldilinea aerophila] >BAL98209.1 ribo... [more]
XP_001742353.11.100e-5245.49hypothetical protein [Monosiga brevicollis MX1] >E... [more]
WP_090754743.13.200e-5247.23ribokinase [Paracoccus chinensis] >SDL11402.1 ribo... [more]
WP_095639167.13.200e-5246.86ribokinase [Paracoccus sp. WN007] >PAU98485.1 ribo... [more]
WP_011688618.15.500e-5246.57ribokinase [Candidatus Solibacter usitatus] >ABJ87... [more]
WP_082839117.19.400e-5247.60ribokinase [Gemmata sp. SH-PL17] >AMV24307.1 Ribok... [more]
WP_070267546.11.200e-5145.71ribokinase [Duganella sp. HH101] >OFA06428.1 ribok... [more]
XP_007665247.12.100e-5145.72PREDICTED: ribokinase [Ornithorhynchus anatinus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000993NSK000993Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586523gene_4093Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g128gene5150Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01240.4NO10G01240.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G01240.3NO10G01240.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G01240.2NO10G01240.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G01240.1NO10G01240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01240.4NO10G01240.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G01240.3NO10G01240.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G01240.2NO10G01240.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G01240.1NO10G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01240 ID=NO10G01240|Name=NO10G01240|organism=Nannochloropsis oceanica|type=gene|length=1882bp
ACAGATGATGAACAGGCGTTGTGGCGTGGTGTGCGTTGGCAGCCTTAACA
TCGACTTATTATGCTATCTTGGCGGCCAATTTCCATCGCCCGGTGAGTCG
TGAGACAGCCAGTGCTGCATGGGGCCGCATTTTTAACACATACATGCAAC
ACGCCGCTAATCCTCTAGGAGAGACTGTCCATGGCCTCCGCTTCTCCACG
TGCCTTGGGGGGAAAGGGGGGAACCAGGCGGTGATGGCGGCGCGCCTTGG
GGCCCCGACTGCCATGGTGGGAAGGGTGGGAAATGATTTGTATGGCAACA
CAATAAGGGAGGCTTTCGAGGGGAACGGTGTCGACACGAGgtaatggaat
gtatacctgtatactgaaatgcgatttctttccacttattctggtgtctc
atcattattaatgtacgtcagGTACCTCCTCAAGACGGCAGACGGGATCG
CCACGGGCACTGCTCACATCCTGGTCAATGGTGAAGGCCAAAATATGATC
ATCGTAATAGCTGGTGCGAACGGGCAATTAACACCCGCGGACGTACAGGC
AGCAGAAGATGTCATAGCGCAAGCAGCAGTCTTAATGgtacgtgcttgta
tggaggtgtgatctcgttgcctgtgaaacaaacgactgcatttacataat
atggccgatgcacagGTGCAGATGGAAATCCCTACCGAGACGAGTTTTGA
GGCCCTGCGTCTTGCCAAAGCCCATGACGTCTTCAGCATCCTCAACCCGG
CCCCAGCACCGGATGGAAGGCTCAGTCAGgtccgtgcgatttcaacgaaa
gtcactgcgggcactgtcatagggttgatatcgatttcacaagctgaaaa
attgacatggttattggcaacctcatgaattcgggggtaatatcattgta
gggcttcctgagggcgtcagtgccgagtgtagggagatcatacaaaatct
tggtaggaggggagaggtcctcccagccctccttaccatttctgtgacat
tcttgttcctaccactacacttaacaaccgaccaaaaaccggtcctactc
gctgctgaccatacatatatatcatatattacacatattgcatctctctc
cccttcccccccgacagGAGTTTCTCGCCTTCGCCTCCCTCGTCTGCCCC
AACGAGACGGAACTTGCCATTCTCACCCAGCTGCCGGTTGGGACCATTCC
TGAGGTCCAAGCGGCAGCTCACAGACTCCGAGAGATGGGTGCTGCGAGTG
TACTCGTTACGCTGGGAGCTCAGGGTGCTTTGTTGATGACGGCGGAGAAC
GCGGCACAGGGTGGTCAGTTAATTCCTTCGAAGCGTGTTGAGCGAGTGGT
GGACACGAGTGGCGCAGGCGATTGTTACATCGGAAGCTTGGCAGCATTTC
TCTCTCGAGGGGTACGTCAACGGGAAGAGCGTGCGTTTTTGTGAGTAAAT
TCTATTTCTCCCCCCCCCCTCTCTCTCTCTCTCTCTCTGTCACTCTCTCC
CTCTCCCTCTCCCACTCTTCTCTCTGTATTTTCTGTTTTTACAGCAATCA
CCTTATCCTTATATGTGCGTTACGTACGATTTAAAGGCGCCTCTCAATGA
AGCTGCCACCAAGGCCGGTGAGATGGCCTCACTAAGTGTCTGCAAGGCGG
GGACACAAACATCCTATCCTTTTGCGAAAGATCTCCCGGCACACTTGCAG
CTTCCACAAATAGCTTGAGTCAGCATTATCAGAGGGAGAGGAAGCAGAGG
AGGTTTGTGGAGCAGGAAGGTGCAAATTTCAATTTGGAAGGTAAAATAGG
AAGAAAGTGAATTTGAGTGCAAATAAAAAAGAAATAAGAAATGTAAGCGG
CTGCAGACAAGCCCAGAAAATGCTAAGTGGGA
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protein sequence of NO10G01240.4

>NO10G01240.4-protein ID=NO10G01240.4-protein|Name=NO10G01240.4|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MQHAANPLGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLY
GNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANG
QLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPA
PAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMG
AASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSL
AAFLSRGVRQREERAFL*
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protein sequence of NO10G01240.3

>NO10G01240.3-protein ID=NO10G01240.3-protein|Name=NO10G01240.3|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MMNRRCGVVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQA
VMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGT
AHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTE
TSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILT
QLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIP
SKRVERVVDTSGAGDCYIGSLAAFLSRGVRQREERAFL*
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protein sequence of NO10G01240.2

>NO10G01240.2-protein ID=NO10G01240.2-protein|Name=NO10G01240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MQHAANPLGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLY
GNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANG
QLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPA
PAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMG
AASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSL
AAFLSRGAPLNEAATKAGEMASLSVCKAGTQTSYPFAKDLPAHLQLPQIA
*
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protein sequence of NO10G01240.1

>NO10G01240.1-protein ID=NO10G01240.1-protein|Name=NO10G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MMNRRCGVVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQA
VMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGT
AHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTE
TSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILT
QLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIP
SKRVERVVDTSGAGDCYIGSLAAFLSRGAPLNEAATKAGEMASLSVCKAG
TQTSYPFAKDLPAHLQLPQIA*
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Synonyms
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