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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:367358..369239 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01240.3 vs.
Match: EWM25391.1 (ribokinase [Nannochloropsis gaditana]) HSP 1 Score: 356.7 bits (914), Expect = 6.900e-95 Identity = 182/272 (66.91%), Postives = 217/272 (79.78%), Query Frame = 0
Query: 8 VVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLSRGV 280
+VCVGSLN+DL CYL +FP PG T+ G +TC GGKGGNQAVMAARLGAPT+MVG VG D++GNT+REA +GV + L + ADG +TGTA ILVNG G+NMII+ AGANG+LTP DVQAAE IA AAV+MVQ+E+P E + EALRLA+AH+VFSILNPAPAP G L QE L+ ASLVCPNETELA+LTQ P T+ E++AAAHRLR MGAA VLVTLG +G LL+T ++ L PS +VE VVDTSGAGDC+IGSLAA+LS G+
Sbjct: 9 IVCVGSLNVDLFCYLHDKFPEPGRTLQGSHSATCCGGKGGNQAVMAARLGAPTSMVGMVGRDVFGNTLREALIHDGVSIKPLREAADGTSTGTAQILVNGRGENMIIITAGANGKLTPTDVQAAESDIAAAAVVMVQLEVPLEATREALRLARAHEVFSILNPAPAPRGGLDQELLSLASLVCPNETELAVLTQKPAKTLSEIEAAAHRLRGMGAARVLVTLGERGTLLVTEKDGEDHVLLTPSPKVEMVVDTSGAGDCFIGSLAAYLSSGM 280
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01240.3 ID=NO10G01240.3|Name=NO10G01240.3|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp
ACAGATGATGAACAGGCGTTGTGGCGTGGTGTGCGTTGGCAGCCTTAACA
TCGACTTATTATGCTATCTTGGCGGCCAATTTCCATCGCCCGGAGAGACT
GTCCATGGCCTCCGCTTCTCCACGTGCCTTGGGGGGAAAGGGGGGAACCA
GGCGGTGATGGCGGCGCGCCTTGGGGCCCCGACTGCCATGGTGGGAAGGG
TGGGAAATGATTTGTATGGCAACACAATAAGGGAGGCTTTCGAGGGGAAC
GGTGTCGACACGAGGTACCTCCTCAAGACGGCAGACGGGATCGCCACGGG
CACTGCTCACATCCTGGTCAATGGTGAAGGCCAAAATATGATCATCGTAA
TAGCTGGTGCGAACGGGCAATTAACACCCGCGGACGTACAGGCAGCAGAA
GATGTCATAGCGCAAGCAGCAGTCTTAATGGTGCAGATGGAAATCCCTAC
CGAGACGAGTTTTGAGGCCCTGCGTCTTGCCAAAGCCCATGACGTCTTCA
GCATCCTCAACCCGGCCCCAGCACCGGATGGAAGGCTCAGTCAGGAGTTT
CTCGCCTTCGCCTCCCTCGTCTGCCCCAACGAGACGGAACTTGCCATTCT
CACCCAGCTGCCGGTTGGGACCATTCCTGAGGTCCAAGCGGCAGCTCACA
GACTCCGAGAGATGGGTGCTGCGAGTGTACTCGTTACGCTGGGAGCTCAG
GGTGCTTTGTTGATGACGGCGGAGAACGCGGCACAGGGTGGTCAGTTAAT
TCCTTCGAAGCGTGTTGAGCGAGTGGTGGACACGAGTGGCGCAGGCGATT
GTTACATCGGAAGCTTGGCAGCATTTCTCTCTCGAGGGGTACGTCAACGG
GAAGAGCGTGCGTTTTTGTGAGTAAATTCTATTTCTCCCCCCCCCCTCTC
TCTCTCTCTCTCTCTGTCACTCTCTCCCTCTCCCTCTCCCACTCTTCTCT
CTGTATTTTCTGTTTTTACAGCAATCACCTTATCCTTATATGTGCGTTAC
GTACGATTTAAAGGCGCCTCTCAATGAAGCTGCCACCAAGGCCGGTGAGA
TGGCCTCACTAAGTGTCTGCAAGGCGGGGACACAAACATCCTATCCTTTT
GCGAAAGATCTCCCGGCACACTTGCAGCTTCCACAAATAGCTTGAGTCAG
CATTATCAGAGGGAGAGGAAGCAGAGGAGGTTTGTGGAGCAGGAAGGTGC
AAATTTCAATTTGGAAGGTAAAATAGGAAGAAAGTGAATTTGAGTGCAAA
TAAAAAAGAAATAAGAAATGTAAGCGGCTGCAGACAAGCCCAGAAAATGC
TAAGTGGGA back to topprotein sequence of NO10G01240.3 >NO10G01240.3-protein ID=NO10G01240.3-protein|Name=NO10G01240.3|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MMNRRCGVVCVGSLNIDLLCYLGGQFPSPGETVHGLRFSTCLGGKGGNQA
VMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGT
AHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTE
TSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILT
QLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIP
SKRVERVVDTSGAGDCYIGSLAAFLSRGVRQREERAFL* back to topmRNA from alignment at chr10:367358..369239- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01240.3 ID=NO10G01240.3|Name=NO10G01240.3|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp|location=Sequence derived from alignment at chr10:367358..369239- (Nannochloropsis oceanica)
ACAGATGATGAACAGGCGTTGTGGCGTGGTGTGCGTTGGCAGCCTTAACA
TCGACTTATTATGCTATCTTGGCGGCCAATTTCCATCGCCCGGTGAGTCG
TGAGACAGCCAGTGCTGCATGGGGCCGCATTTTTAACACATACATGCAAC
ACGCCGCTAATCCTCTAGGAGAGACTGTCCATGGCCTCCGCTTCTCCACG
TGCCTTGGGGGGAAAGGGGGGAACCAGGCGGTGATGGCGGCGCGCCTTGG
GGCCCCGACTGCCATGGTGGGAAGGGTGGGAAATGATTTGTATGGCAACA
CAATAAGGGAGGCTTTCGAGGGGAACGGTGTCGACACGAGGTAATGGAAT
GTATACCTGTATACTGAAATGCGATTTCTTTCCACTTATTCTGGTGTCTC
ATCATTATTAATGTACGTCAGGTACCTCCTCAAGACGGCAGACGGGATCG
CCACGGGCACTGCTCACATCCTGGTCAATGGTGAAGGCCAAAATATGATC
ATCGTAATAGCTGGTGCGAACGGGCAATTAACACCCGCGGACGTACAGGC
AGCAGAAGATGTCATAGCGCAAGCAGCAGTCTTAATGGTACGTGCTTGTA
TGGAGGTGTGATCTCGTTGCCTGTGAAACAAACGACTGCATTTACATAAT
ATGGCCGATGCACAGGTGCAGATGGAAATCCCTACCGAGACGAGTTTTGA
GGCCCTGCGTCTTGCCAAAGCCCATGACGTCTTCAGCATCCTCAACCCGG
CCCCAGCACCGGATGGAAGGCTCAGTCAGGTCCGTGCGATTTCAACGAAA
GTCACTGCGGGCACTGTCATAGGGTTGATATCGATTTCACAAGCTGAAAA
ATTGACATGGTTATTGGCAACCTCATGAATTCGGGGGTAATATCATTGTA
GGGCTTCCTGAGGGCGTCAGTGCCGAGTGTAGGGAGATCATACAAAATCT
TGGTAGGAGGGGAGAGGTCCTCCCAGCCCTCCTTACCATTTCTGTGACAT
TCTTGTTCCTACCACTACACTTAACAACCGACCAAAAACCGGTCCTACTC
GCTGCTGACCATACATATATATCATATATTACACATATTGCATCTCTCTC
CCCTTCCCCCCCGACAGGAGTTTCTCGCCTTCGCCTCCCTCGTCTGCCCC
AACGAGACGGAACTTGCCATTCTCACCCAGCTGCCGGTTGGGACCATTCC
TGAGGTCCAAGCGGCAGCTCACAGACTCCGAGAGATGGGTGCTGCGAGTG
TACTCGTTACGCTGGGAGCTCAGGGTGCTTTGTTGATGACGGCGGAGAAC
GCGGCACAGGGTGGTCAGTTAATTCCTTCGAAGCGTGTTGAGCGAGTGGT
GGACACGAGTGGCGCAGGCGATTGTTACATCGGAAGCTTGGCAGCATTTC
TCTCTCGAGGGGTACGTCAACGGGAAGAGCGTGCGTTTTTGTGAGTAAAT
TCTATTTCTCCCCCCCCCCTCTCTCTCTCTCTCTCTCTGTCACTCTCTCC
CTCTCCCTCTCCCACTCTTCTCTCTGTATTTTCTGTTTTTACAGCAATCA
CCTTATCCTTATATGTGCGTTACGTACGATTTAAAGGCGCCTCTCAATGA
AGCTGCCACCAAGGCCGGTGAGATGGCCTCACTAAGTGTCTGCAAGGCGG
GGACACAAACATCCTATCCTTTTGCGAAAGATCTCCCGGCACACTTGCAG
CTTCCACAAATAGCTTGAGTCAGCATTATCAGAGGGAGAGGAAGCAGAGG
AGGTTTGTGGAGCAGGAAGGTGCAAATTTCAATTTGGAAGGTAAAATAGG
AAGAAAGTGAATTTGAGTGCAAATAAAAAAGAAATAAGAAATGTAAGCGG
CTGCAGACAAGCCCAGAAAATGCTAAGTGGGA back to topCoding sequence (CDS) from alignment at chr10:367358..369239- >NO10G01240.3 ID=NO10G01240.3|Name=NO10G01240.3|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr10:367358..369239- (Nannochloropsis oceanica)
ATGATGAACAGGCGTTGTGGCGTGGTGTGCGTTGGCAGCCTTAACATCGA
CTTATTATGCTATCTTGGCGGCCAATTTCCATCGCCCGGAGAGACTGTCC
ATGGCCTCCGCTTCTCCACGTGCCTTGGGGGGAAAGGGGGGAACCAGGCG
GTGATGGCGGCGCGCCTTGGGGCCCCGACTGCCATGGTGGGAAGGGTGGG
AAATGATTTGTATGGCAACACAATAAGGGAGGCTTTCGAGGGGAACGGTG
TCGACACGAGGTACCTCCTCAAGACGGCAGACGGGATCGCCACGGGCACT
GCTCACATCCTGGTCAATGGTGAAGGCCAAAATATGATCATCGTAATAGC
TGGTGCGAACGGGCAATTAACACCCGCGGACGTACAGGCAGCAGAAGATG
TCATAGCGCAAGCAGCAGTCTTAATGGTGCAGATGGAAATCCCTACCGAG
ACGAGTTTTGAGGCCCTGCGTCTTGCCAAAGCCCATGACGTCTTCAGCAT
CCTCAACCCGGCCCCAGCACCGGATGGAAGGCTCAGTCAGGAGTTTCTCG
CCTTCGCCTCCCTCGTCTGCCCCAACGAGACGGAACTTGCCATTCTCACC
CAGCTGCCGGTTGGGACCATTCCTGAGGTCCAAGCGGCAGCTCACAGACT
CCGAGAGATGGGTGCTGCGAGTGTACTCGTTACGCTGGGAGCTCAGGGTG
CTTTGTTGATGACGGCGGAGAACGCGGCACAGGGTGGTCAGTTAATTCCT
TCGAAGCGTGTTGAGCGAGTGGTGGACACGAGTGGCGCAGGCGATTGTTA
CATCGGAAGCTTGGCAGCATTTCTCTCTCGAGGGGTACGTCAACGGGAAG
AGCGTGCGTTTTTGTGA back to top
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