NO10G01240.4, NO10G01240.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01240.4
Unique NameNO10G01240.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1385
Alignment locationchr10:367358..369239 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:367358..369239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO10G01240.4 vs.
Match: EWM25391.1 (ribokinase [Nannochloropsis gaditana])

HSP 1 Score: 320.5 bits (820), Expect = 5.100e-84
Identity = 167/250 (66.80%), Postives = 199/250 (79.60%), Query Frame = 0 
Query:    9 GETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLYGNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANGQLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPAPAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMGAASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSLAAFLSRGV 259
            G T+ G   +TC GGKGGNQAVMAARLGAPT+MVG VG D++GNT+REA   +GV  + L + ADG +TGTA ILVNG G+NMII+ AGANG+LTP DVQAAE  IA AAV+MVQ+E+P E + EALRLA+AH+VFSILNPAPAP G L QE L+ ASLVCPNETELA+LTQ P  T+ E++AAAHRLR MGAA VLVTLG +G LL+T ++      L PS +VE VVDTSGAGDC+IGSLAA+LS G+
Sbjct:   31 GRTLQGSHSATCCGGKGGNQAVMAARLGAPTSMVGMVGRDVFGNTLREALIHDGVSIKPLREAADGTSTGTAQILVNGRGENMIIITAGANGKLTPTDVQAAESDIAAAAVVMVQLEVPLEATREALRLARAHEVFSILNPAPAPRGGLDQELLSLASLVCPNETELAVLTQKPAKTLSEIEAAAHRLRGMGAARVLVTLGERGTLLVTEKDGEDHVLLTPSPKVEMVVDTSGAGDCFIGSLAAYLSSGM 280
The following BLAST results are available for this feature:
BLAST of NO10G01240.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25391.15.100e-8466.80ribokinase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01240NO10G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01240.4NO10G01240.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01240.4.cds1NO10G01240.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01240.4.cds2NO10G01240.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01240.4.cds3NO10G01240.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01240.4.cds4NO10G01240.4.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01240.4 ID=NO10G01240.4|Name=NO10G01240.4|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp
ACAGATGATGAACAGGCGTTGTGGCGTGGTGTGCGTTGGCAGCCTTAACA
TCGACTTATTATGCTATCTTGGCGGCCAATTTCCATCGCCCGGTGAGTCG
TGAGACAGCCAGTGCTGCATGGGGCCGCATTTTTAACACATACATGCAAC
ACGCCGCTAATCCTCTAGGAGAGACTGTCCATGGCCTCCGCTTCTCCACG
TGCCTTGGGGGGAAAGGGGGGAACCAGGCGGTGATGGCGGCGCGCCTTGG
GGCCCCGACTGCCATGGTGGGAAGGGTGGGAAATGATTTGTATGGCAACA
CAATAAGGGAGGCTTTCGAGGGGAACGGTGTCGACACGAGGTACCTCCTC
AAGACGGCAGACGGGATCGCCACGGGCACTGCTCACATCCTGGTCAATGG
TGAAGGCCAAAATATGATCATCGTAATAGCTGGTGCGAACGGGCAATTAA
CACCCGCGGACGTACAGGCAGCAGAAGATGTCATAGCGCAAGCAGCAGTC
TTAATGGTGCAGATGGAAATCCCTACCGAGACGAGTTTTGAGGCCCTGCG
TCTTGCCAAAGCCCATGACGTCTTCAGCATCCTCAACCCGGCCCCAGCAC
CGGATGGAAGGCTCAGTCAGGAGTTTCTCGCCTTCGCCTCCCTCGTCTGC
CCCAACGAGACGGAACTTGCCATTCTCACCCAGCTGCCGGTTGGGACCAT
TCCTGAGGTCCAAGCGGCAGCTCACAGACTCCGAGAGATGGGTGCTGCGA
GTGTACTCGTTACGCTGGGAGCTCAGGGTGCTTTGTTGATGACGGCGGAG
AACGCGGCACAGGGTGGTCAGTTAATTCCTTCGAAGCGTGTTGAGCGAGT
GGTGGACACGAGTGGCGCAGGCGATTGTTACATCGGAAGCTTGGCAGCAT
TTCTCTCTCGAGGGGTACGTCAACGGGAAGAGCGTGCGTTTTTGTGAGTA
AATTCTATTTCTCCCCCCCCCCTCTCTCTCTCTCTCTCTCTGTCACTCTC
TCCCTCTCCCTCTCCCACTCTTCTCTCTGTATTTTCTGTTTTTACAGCAA
TCACCTTATCCTTATATGTGCGTTACGTACGATTTAAAGGCGCCTCTCAA
TGAAGCTGCCACCAAGGCCGGTGAGATGGCCTCACTAAGTGTCTGCAAGG
CGGGGACACAAACATCCTATCCTTTTGCGAAAGATCTCCCGGCACACTTG
CAGCTTCCACAAATAGCTTGAGTCAGCATTATCAGAGGGAGAGGAAGCAG
AGGAGGTTTGTGGAGCAGGAAGGTGCAAATTTCAATTTGGAAGGTAAAAT
AGGAAGAAAGTGAATTTGAGTGCAAATAAAAAAGAAATAAGAAATGTAAG
CGGCTGCAGACAAGCCCAGAAAATGCTAAGTGGGA
back to top

protein sequence of NO10G01240.4

>NO10G01240.4-protein ID=NO10G01240.4-protein|Name=NO10G01240.4|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MQHAANPLGETVHGLRFSTCLGGKGGNQAVMAARLGAPTAMVGRVGNDLY
GNTIREAFEGNGVDTRYLLKTADGIATGTAHILVNGEGQNMIIVIAGANG
QLTPADVQAAEDVIAQAAVLMVQMEIPTETSFEALRLAKAHDVFSILNPA
PAPDGRLSQEFLAFASLVCPNETELAILTQLPVGTIPEVQAAAHRLREMG
AASVLVTLGAQGALLMTAENAAQGGQLIPSKRVERVVDTSGAGDCYIGSL
AAFLSRGVRQREERAFL*
back to top

mRNA from alignment at chr10:367358..369239-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01240.4 ID=NO10G01240.4|Name=NO10G01240.4|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp|location=Sequence derived from alignment at chr10:367358..369239- (Nannochloropsis oceanica)
ACAGATGATGAACAGGCGTTGTGGCGTGGTGTGCGTTGGCAGCCTTAACA
TCGACTTATTATGCTATCTTGGCGGCCAATTTCCATCGCCCGGTGAGTCG
TGAGACAGCCAGTGCTGCATGGGGCCGCATTTTTAACACATACATGCAAC
ACGCCGCTAATCCTCTAGGAGAGACTGTCCATGGCCTCCGCTTCTCCACG
TGCCTTGGGGGGAAAGGGGGGAACCAGGCGGTGATGGCGGCGCGCCTTGG
GGCCCCGACTGCCATGGTGGGAAGGGTGGGAAATGATTTGTATGGCAACA
CAATAAGGGAGGCTTTCGAGGGGAACGGTGTCGACACGAGGTAATGGAAT
GTATACCTGTATACTGAAATGCGATTTCTTTCCACTTATTCTGGTGTCTC
ATCATTATTAATGTACGTCAGGTACCTCCTCAAGACGGCAGACGGGATCG
CCACGGGCACTGCTCACATCCTGGTCAATGGTGAAGGCCAAAATATGATC
ATCGTAATAGCTGGTGCGAACGGGCAATTAACACCCGCGGACGTACAGGC
AGCAGAAGATGTCATAGCGCAAGCAGCAGTCTTAATGGTACGTGCTTGTA
TGGAGGTGTGATCTCGTTGCCTGTGAAACAAACGACTGCATTTACATAAT
ATGGCCGATGCACAGGTGCAGATGGAAATCCCTACCGAGACGAGTTTTGA
GGCCCTGCGTCTTGCCAAAGCCCATGACGTCTTCAGCATCCTCAACCCGG
CCCCAGCACCGGATGGAAGGCTCAGTCAGGTCCGTGCGATTTCAACGAAA
GTCACTGCGGGCACTGTCATAGGGTTGATATCGATTTCACAAGCTGAAAA
ATTGACATGGTTATTGGCAACCTCATGAATTCGGGGGTAATATCATTGTA
GGGCTTCCTGAGGGCGTCAGTGCCGAGTGTAGGGAGATCATACAAAATCT
TGGTAGGAGGGGAGAGGTCCTCCCAGCCCTCCTTACCATTTCTGTGACAT
TCTTGTTCCTACCACTACACTTAACAACCGACCAAAAACCGGTCCTACTC
GCTGCTGACCATACATATATATCATATATTACACATATTGCATCTCTCTC
CCCTTCCCCCCCGACAGGAGTTTCTCGCCTTCGCCTCCCTCGTCTGCCCC
AACGAGACGGAACTTGCCATTCTCACCCAGCTGCCGGTTGGGACCATTCC
TGAGGTCCAAGCGGCAGCTCACAGACTCCGAGAGATGGGTGCTGCGAGTG
TACTCGTTACGCTGGGAGCTCAGGGTGCTTTGTTGATGACGGCGGAGAAC
GCGGCACAGGGTGGTCAGTTAATTCCTTCGAAGCGTGTTGAGCGAGTGGT
GGACACGAGTGGCGCAGGCGATTGTTACATCGGAAGCTTGGCAGCATTTC
TCTCTCGAGGGGTACGTCAACGGGAAGAGCGTGCGTTTTTGTGAGTAAAT
TCTATTTCTCCCCCCCCCCTCTCTCTCTCTCTCTCTCTGTCACTCTCTCC
CTCTCCCTCTCCCACTCTTCTCTCTGTATTTTCTGTTTTTACAGCAATCA
CCTTATCCTTATATGTGCGTTACGTACGATTTAAAGGCGCCTCTCAATGA
AGCTGCCACCAAGGCCGGTGAGATGGCCTCACTAAGTGTCTGCAAGGCGG
GGACACAAACATCCTATCCTTTTGCGAAAGATCTCCCGGCACACTTGCAG
CTTCCACAAATAGCTTGAGTCAGCATTATCAGAGGGAGAGGAAGCAGAGG
AGGTTTGTGGAGCAGGAAGGTGCAAATTTCAATTTGGAAGGTAAAATAGG
AAGAAAGTGAATTTGAGTGCAAATAAAAAAGAAATAAGAAATGTAAGCGG
CTGCAGACAAGCCCAGAAAATGCTAAGTGGGA
back to top

Coding sequence (CDS) from alignment at chr10:367358..369239-

>NO10G01240.4 ID=NO10G01240.4|Name=NO10G01240.4|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at chr10:367358..369239- (Nannochloropsis oceanica)
ATGCAACACGCCGCTAATCCTCTAGGAGAGACTGTCCATGGCCTCCGCTT
CTCCACGTGCCTTGGGGGGAAAGGGGGGAACCAGGCGGTGATGGCGGCGC
GCCTTGGGGCCCCGACTGCCATGGTGGGAAGGGTGGGAAATGATTTGTAT
GGCAACACAATAAGGGAGGCTTTCGAGGGGAACGGTGTCGACACGAGGTA
CCTCCTCAAGACGGCAGACGGGATCGCCACGGGCACTGCTCACATCCTGG
TCAATGGTGAAGGCCAAAATATGATCATCGTAATAGCTGGTGCGAACGGG
CAATTAACACCCGCGGACGTACAGGCAGCAGAAGATGTCATAGCGCAAGC
AGCAGTCTTAATGGTGCAGATGGAAATCCCTACCGAGACGAGTTTTGAGG
CCCTGCGTCTTGCCAAAGCCCATGACGTCTTCAGCATCCTCAACCCGGCC
CCAGCACCGGATGGAAGGCTCAGTCAGGAGTTTCTCGCCTTCGCCTCCCT
CGTCTGCCCCAACGAGACGGAACTTGCCATTCTCACCCAGCTGCCGGTTG
GGACCATTCCTGAGGTCCAAGCGGCAGCTCACAGACTCCGAGAGATGGGT
GCTGCGAGTGTACTCGTTACGCTGGGAGCTCAGGGTGCTTTGTTGATGAC
GGCGGAGAACGCGGCACAGGGTGGTCAGTTAATTCCTTCGAAGCGTGTTG
AGCGAGTGGTGGACACGAGTGGCGCAGGCGATTGTTACATCGGAAGCTTG
GCAGCATTTCTCTCTCGAGGGGTACGTCAACGGGAAGAGCGTGCGTTTTT
GTGA
back to top
Synonyms
Publications