NO10G01020, NO10G01020 (gene) Nannochloropsis oceanica

Overview
NameNO10G01020
Unique NameNO10G01020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2208
Alignment locationchr10:312761..314968 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:312761..314968 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G01020 vs. NCBI_GenBank
Match: XP_005854591.1 (hypothetical protein NGA_0176000 [Nannochloropsis gaditana CCMP526] >EKU21772.1 hypothetical protein NGA_0176000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 189.9 bits (481), Expect = 2.400e-44
Identity = 118/134 (88.06%), Postives = 125/134 (93.28%), Query Frame = 0 
Query:  259 MYLGGVGGAVLGVHFFNQDGNFGAAIRAMGKLVLYACDRLAYAWSEVKFNWKAWRVYERSFKKLESLDREMQVSQXXXXXXXXXXXXXXXXXXXXXXQTSAKNLEESLKDQAIYWQRTQRLRDEQRQAQMIHQE 393
            MYLG VGGAVLGVHFFN++GNFGA IRA+GKLVLYACDRLAYAWSE+KFNWKAWRVYERSFKKLESLD+EMQV  XXXXXXXXXXXXXXXXXXXXXX    K LEESLK+QA+YWQRTQRLRDEQRQAQMIHQE
Sbjct:    1 MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQE 134
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BLAST of NO10G01020 vs. NCBI_GenBank
Match: XP_005853777.1 (hypothetical protein NGA_0438200 [Nannochloropsis gaditana CCMP526] >EKU22587.1 hypothetical protein NGA_0438200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 189.9 bits (481), Expect = 2.400e-44
Identity = 118/134 (88.06%), Postives = 125/134 (93.28%), Query Frame = 0 
Query:  259 MYLGGVGGAVLGVHFFNQDGNFGAAIRAMGKLVLYACDRLAYAWSEVKFNWKAWRVYERSFKKLESLDREMQVSQXXXXXXXXXXXXXXXXXXXXXXQTSAKNLEESLKDQAIYWQRTQRLRDEQRQAQMIHQE 393
            MYLG VGGAVLGVHFFN++GNFGA IRA+GKLVLYACDRLAYAWSE+KFNWKAWRVYERSFKKLESLD+EMQV  XXXXXXXXXXXXXXXXXXXXXX    K LEESLK+QA+YWQRTQRLRDEQRQAQMIHQE
Sbjct:    1 MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQE 134
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BLAST of NO10G01020 vs. NCBI_GenBank
Match: EWM25333.1 (hypothetical protein Naga_100196g4 [Nannochloropsis gaditana])

HSP 1 Score: 189.9 bits (481), Expect = 2.400e-44
Identity = 118/134 (88.06%), Postives = 125/134 (93.28%), Query Frame = 0 
Query:  259 MYLGGVGGAVLGVHFFNQDGNFGAAIRAMGKLVLYACDRLAYAWSEVKFNWKAWRVYERSFKKLESLDREMQVSQXXXXXXXXXXXXXXXXXXXXXXQTSAKNLEESLKDQAIYWQRTQRLRDEQRQAQMIHQE 393
            MYLG VGGAVLGVHFFN++GNFGA IRA+GKLVLYACDRLAYAWSE+KFNWKAWRVYERSFKKLESLD+EMQV  XXXXXXXXXXXXXXXXXXXXXX    K LEESLK+QA+YWQRTQRLRDEQRQAQMIHQE
Sbjct:    1 MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQE 134
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BLAST of NO10G01020 vs. NCBI_GenBank
Match: CEM02231.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 70.9 bits (172), Expect = 1.600e-8
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 0 
Query:  229 LPDGEQLLLGCTFAGAVLGLFVGRALLNKQMYLGGVGGAVLGVHFFNQDGNFGAAIRAMGKLVLYACDRLAYAWSEVKFNWKAWRVYERSFKKLESLDRE 329
            +P  EQLL  C+ AGA+LGL V + LL +  +LG   G V  ++ +++ G     +RA G+L + A  +  Y   ++K  ++AW+VYER+FK+   LD++
Sbjct:   82 IPYEEQLLAACSVAGALLGLIVSKGLLQRG-WLGAAIGLVWAINNYDKPGRVSRWVRATGRLFVLAFYQWRYLVEDLKMKFRAWKVYERAFKRXXDLDKQ 180
The following BLAST results are available for this feature:
BLAST of NO10G01020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005854591.12.400e-4488.06hypothetical protein NGA_0176000 [Nannochloropsis ... [more]
XP_005853777.12.400e-4488.06hypothetical protein NGA_0438200 [Nannochloropsis ... [more]
EWM25333.12.400e-4488.06hypothetical protein Naga_100196g4 [Nannochloropsi... [more]
CEM02231.11.600e-837.00unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL053nonsL053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR017ngnoR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000971NSK000971Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G01020.1NO10G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G01020.2NO10G01020.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|424829gene_4116Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100196g4gene5169Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G01020.1NO10G01020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G01020.2NO10G01020.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G01020 ID=NO10G01020|Name=NO10G01020|organism=Nannochloropsis oceanica|type=gene|length=2208bp
TCTGTAGTCTGTAGGTGTGCCTGTGGATTATGAAGTGTGTAGAGGGTGTG
TGTGGATTGTATTTACGATGCTGTCAAAGCTGTCAAAACAGAGGAAGCAC
GACACGCCGTGGCCCGGGCGCATTTTTCTTTCCGTGCCGGTCACGCTCAG
CGAGAGGAGCGATGCCGCGTTGAATCACGAGGGCTTACCTTTTTACGCAA
CCCACACTCACATAACATGCTATGAACACAAACAGACATACAGCCGAGGA
GCCAATAATCCGGACGCTGGTTTTCGAATGGCTCCGCACCGACAAAAGgt
gagtcgctgctttgacgcccctctcccttttttaaagtctccctctcaaa
cccacagcaacgtacgcatgcccacacctcgagccatgcaccccacatac
acagGCCATGCATCTGCCCAACGGGGCCCTGGTACTGCTCGTAGGTGCAG
CGCTCTTTTGCTGCTGCTGCTGTTGCTGTCAGGCATACGTCCCTTCCCCT
CTCTTTGGTCCCAAACGGCGTTCCCATCCCTTGCCCGCCTTACGCCACGC
TGCCCGCCCCATTGCCCGCATCGCCCCCTTCCCCCCTCTGCGCTCCACAT
TCTCCTCCTTCTTCTCTGAGCGGACAGGTTCAAATAACTCCTCCTCTGCC
TCCAACGATAATTTGTCGTATGAACTCCGTTTATTGGAGCTAGAAGGTCG
ACTTTTGAAATTGGAGGGCTTGACAGCCCGGGCCGCCAAGGCCGGTGGCG
GGGGAGGGGGAGGAGGAGGGAGGGGCAGGGCGGGGGGGAATGTAAAAGGT
GCAACGGGTATGGGGACGAGTGCTTTCAATCATATTTTACCGGACGGGGA
GCAGTTGCTGTTGGGATGTACCTTTGCGGGGGCTGTACTCGGTTTGTTTG
TAGGTCGGGCGTTGTTAAACAAGCAGATGTATTTGGGAGGGGTGGGGGGG
GCGGTGTTGGGGGTACATTTCTTTAATCAGGATGGAAATTTCGGCGCGGC
TATTCGGGCAATGGGAAAGTTGGTGCTGTACGCGTGTGATCGATTGGCCT
ATGCCTGGTCAGAGGTGAAGTTCAATTGGAAGGCATGGAGGGTTTATGAG
AGGAGTTTTAAAAAATTGGAGAGTTTGGATAGGGAGATGCAGGTGTCTCA
GAAGATCAAGGCTTGGGATCAACAATATGGGGTGTCGAATAATGTGAATG
TGTGGTTTAAAAAGTTTCAAACGTCGGCCAAAAACTTGGAAGAAAGTTTG
AAGGACCAAGCGATCTACTGGCAGCGGACCCAAAGGCTGCGCGATGAGCA
GAGACAGGCACAGATGATTCATCAAGAAGTTCAACGGCAGCAAGAGAGAG
AGCGGATGAGGCAGAATGGTGGAGGAGTGGGGGGAGGGTCGTTTAAGTCA
GGGAGTGGTGGTATTGCTGAGGAAGGGAGGGAGCAGCAGCAGCAGCAAGA
GAAGAAGGGAGGAGGTGAAGGTTTCCATGCAGCGGGTGACCATGAGAATA
GGATCAAGGCTGGCGGGTTCTGGCCATCACATAATGATGAAACTTCTTCC
TCTTCCACCTCCACTCCCTCCGTTGCTCCTCGACCTTCCTCCTACTCCTC
AAGGGTCTCTTCCTCACCCTCCTCCTTCTCGTCTTCCTCCTCATCCTTGG
ACGCGACCGGCGCCATAGGCAATGGTGGTAGTATCAATGGCCTCCAGGGA
CGGAGTGGCCGGTTGCCCTCTTCCTCGCCCTCCCCCTCTTCCTCGTCCTC
TCCTACGATAGCCTCGGAGTTCAACCGTTTTGTCAAGAGCTTCGGGGGGA
CCACAAGCGGTGTTTCCCGTTCCACTCACTCTCCATCTTCCTCCCGTACT
TCGTCCGCCTCTAATGTAAATACACAAATTCATGGCCATCAGGCGAGCAA
CCATCAGCAGCAGGAGGAGCAGCAGCAGCAGGGATTTAATAAGGGCGGGA
ATGACATTTTTACCTCTTCATCGGGAGGAGGGAAGAAGGGAGGAAGAGAA
GAACAGGATGACAGTGGCGGTGAAGTTGGTATGTTTATGTAAAAAAGAGA
AAACTCGAGGAAGAGAGTGAGGGATTACGCGCCATTTGGGGCGGTATGTG
TTCTGTTTCTGTCTGTGTGGTGGTGGAGTGTCTAAATTGAAGCCGAAAAC
AAAGCGATTACAAAGGACAAAGATGAGTGCCGAACAGGAGTGAGAAACTA
TTTTCATA
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protein sequence of NO10G01020.1

>NO10G01020.1-protein ID=NO10G01020.1-protein|Name=NO10G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp
MLSKLSKQRKHDTPWPGRIFLSVPVTLSERSDAALNHEGLPFYATHTHIT
CYEHKQTYSRGANNPDAGFRMAPHRQKAMHLPNGALVLLVGAALFCCCCC
CCQAYVPSPLFGPKRRSHPLPALRHAARPIARIAPFPPLRSTFSSFFSER
TGSNNSSSASNDNLSYELRLLELEGRLLKLEGLTARAAKAGGGGGGGGGR
GRAGGNVKGATGMGTSAFNHILPDGEQLLLGCTFAGAVLGLFVGRALLNK
QMYLGGVGGAVLGVHFFNQDGNFGAAIRAMGKLVLYACDRLAYAWSEVKF
NWKAWRVYERSFKKLESLDREMQVSQKIKAWDQQYGVSNNVNVWFKKFQT
SAKNLEESLKDQAIYWQRTQRLRDEQRQAQMIHQEVQRQQERERMRQNGG
GVGGGSFKSGSGGIAEEGREQQQQQEKKGGGEGFHAAGDHENRIKAGGFW
PSHNDETSSSSTSTPSVAPRPSSYSSRVSSSPSSFSSSSSSLDATGAIGN
GGSINGLQGRSGRLPSSSPSPSSSSSPTIASEFNRFVKSFGGTTSGVSRS
THSPSSSRTSSASNVNTQIHGHQASNHQQQEEQQQQGFNKGGNDIFTSSS
GGGKKGGREEQDDSGGEVGMFM*
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protein sequence of NO10G01020.2

>NO10G01020.2-protein ID=NO10G01020.2-protein|Name=NO10G01020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=630bp
MLSKLSKQRKHDTPWPGRIFLSVPVTLSERSDAALNHEGLPFYATHTHIT
CYEHKQTYSRGANNPDAGFRMAPHRQKPCTPHTQAMHLPNGALVLLVGAA
LFCCCCCCCQAYVPSPLFGPKRRSHPLPALRHAARPIARIAPFPPLRSTF
SSFFSERTGSNNSSSASNDNLSYELRLLELEGRLLKLEGLTARAAKAGGG
GGGGGGRGRAGGNVKGATGMGTSAFNHILPDGEQLLLGCTFAGAVLGLFV
GRALLNKQMYLGGVGGAVLGVHFFNQDGNFGAAIRAMGKLVLYACDRLAY
AWSEVKFNWKAWRVYERSFKKLESLDREMQVSQKIKAWDQQYGVSNNVNV
WFKKFQTSAKNLEESLKDQAIYWQRTQRLRDEQRQAQMIHQEVQRQQERE
RMRQNGGGVGGGSFKSGSGGIAEEGREQQQQQEKKGGGEGFHAAGDHENR
IKAGGFWPSHNDETSSSSTSTPSVAPRPSSYSSRVSSSPSSFSSSSSSLD
ATGAIGNGGSINGLQGRSGRLPSSSPSPSSSSSPTIASEFNRFVKSFGGT
TSGVSRSTHSPSSSRTSSASNVNTQIHGHQASNHQQQEEQQQQGFNKGGN
DIFTSSSGGGKKGGREEQDDSGGEVGMFM*
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Synonyms
Publications