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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:312761..314968 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01020.2 vs.
Match: EWM25333.1 (hypothetical protein Naga_100196g4 [Nannochloropsis gaditana]) HSP 1 Score: 307.8 bits (787), Expect = 8.000e-80 Identity = 198/324 (61.11%), Postives = 231/324 (71.30%), Query Frame = 0
Query: 259 MYLGGVGGAVLGVHFFNQDGNFGAAIRAMGKLVLYACDRLAYAWSEVKFNWKAWRVYERSFKKLESLDREMQVSQKIKAWDQQYGVSNNVNVWFKKFQTSAKNLEESLKDQAIYWQRTQRLRDEQRQAQMIHQEVQRQQERERMRQNGGGVGGGSFKSGS------GGIAEEGREQQQQQEKKGGGEGFHAAGDHENRIKAGGFWPSHNDETSSSSTSTPSVAPRPSSYSSRVSSSPSSFSSSSSS---LDATGAIGNGGSINGLQGRSGRLPSSSPSPSSSSSPTIASEFNRFVKSFGGTTSGVSRSTH---SPSSSRTSSAS 571
MYLG VGGAVLGVHFFN++GNFGA IRA+GKLVLYACDRLAYAWSE+KFNWKAWRVYERSFKKLESLD+EMQVS+KIKAWDQQY VS N+N W++KFQTSAK LEESLK+QA+YWQRTQRLRDEQRQAQMIHQE+QRQQERER RQNGGGV GG+F+S S + E EQ + +G GEG R+ AGG W + + +S TP+ P+P+S+ S +SP S SS+SS LD GA+G G GR P SSP +A EFNRFVKS GG TSG+SRS++ SP S +S AS
Sbjct: 1 MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVSKKIKAWDQQYQVSTNLNGWWRKFQTSAKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQEIQRQQERERARQNGGGVSGGAFQSTSVETEAPASLRPES-EQGEGARGQGRGEGVPLTAQGP-RLGAGGGWSA---PRAQASALTPASGPQPASHPSHPGASPPSHFSSTSSRQGLDTPGAVG---------GPGGR-------PPPPSSPGLAFEFNRFVKSLGGATSGISRSSNPAASPVPSPSSPAS 303
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01020.2 ID=NO10G01020.2|Name=NO10G01020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2123bp
TCTGTAGTCTGTAGGTGTGCCTGTGGATTATGAAGTGTGTAGAGGGTGTG
TGTGGATTGTATTTACGATGCTGTCAAAGCTGTCAAAACAGAGGAAGCAC
GACACGCCGTGGCCCGGGCGCATTTTTCTTTCCGTGCCGGTCACGCTCAG
CGAGAGGAGCGATGCCGCGTTGAATCACGAGGGCTTACCTTTTTACGCAA
CCCACACTCACATAACATGCTATGAACACAAACAGACATACAGCCGAGGA
GCCAATAATCCGGACGCTGGTTTTCGAATGGCTCCGCACCGACAAAAGCC
ATGCACCCCACATACACAGGCCATGCATCTGCCCAACGGGGCCCTGGTAC
TGCTCGTAGGTGCAGCGCTCTTTTGCTGCTGCTGCTGTTGCTGTCAGGCA
TACGTCCCTTCCCCTCTCTTTGGTCCCAAACGGCGTTCCCATCCCTTGCC
CGCCTTACGCCACGCTGCCCGCCCCATTGCCCGCATCGCCCCCTTCCCCC
CTCTGCGCTCCACATTCTCCTCCTTCTTCTCTGAGCGGACAGGTTCAAAT
AACTCCTCCTCTGCCTCCAACGATAATTTGTCGTATGAACTCCGTTTATT
GGAGCTAGAAGGTCGACTTTTGAAATTGGAGGGCTTGACAGCCCGGGCCG
CCAAGGCCGGTGGCGGGGGAGGGGGAGGAGGAGGGAGGGGCAGGGCGGGG
GGGAATGTAAAAGGTGCAACGGGTATGGGGACGAGTGCTTTCAATCATAT
TTTACCGGACGGGGAGCAGTTGCTGTTGGGATGTACCTTTGCGGGGGCTG
TACTCGGTTTGTTTGTAGGTCGGGCGTTGTTAAACAAGCAGATGTATTTG
GGAGGGGTGGGGGGGGCGGTGTTGGGGGTACATTTCTTTAATCAGGATGG
AAATTTCGGCGCGGCTATTCGGGCAATGGGAAAGTTGGTGCTGTACGCGT
GTGATCGATTGGCCTATGCCTGGTCAGAGGTGAAGTTCAATTGGAAGGCA
TGGAGGGTTTATGAGAGGAGTTTTAAAAAATTGGAGAGTTTGGATAGGGA
GATGCAGGTGTCTCAGAAGATCAAGGCTTGGGATCAACAATATGGGGTGT
CGAATAATGTGAATGTGTGGTTTAAAAAGTTTCAAACGTCGGCCAAAAAC
TTGGAAGAAAGTTTGAAGGACCAAGCGATCTACTGGCAGCGGACCCAAAG
GCTGCGCGATGAGCAGAGACAGGCACAGATGATTCATCAAGAAGTTCAAC
GGCAGCAAGAGAGAGAGCGGATGAGGCAGAATGGTGGAGGAGTGGGGGGA
GGGTCGTTTAAGTCAGGGAGTGGTGGTATTGCTGAGGAAGGGAGGGAGCA
GCAGCAGCAGCAAGAGAAGAAGGGAGGAGGTGAAGGTTTCCATGCAGCGG
GTGACCATGAGAATAGGATCAAGGCTGGCGGGTTCTGGCCATCACATAAT
GATGAAACTTCTTCCTCTTCCACCTCCACTCCCTCCGTTGCTCCTCGACC
TTCCTCCTACTCCTCAAGGGTCTCTTCCTCACCCTCCTCCTTCTCGTCTT
CCTCCTCATCCTTGGACGCGACCGGCGCCATAGGCAATGGTGGTAGTATC
AATGGCCTCCAGGGACGGAGTGGCCGGTTGCCCTCTTCCTCGCCCTCCCC
CTCTTCCTCGTCCTCTCCTACGATAGCCTCGGAGTTCAACCGTTTTGTCA
AGAGCTTCGGGGGGACCACAAGCGGTGTTTCCCGTTCCACTCACTCTCCA
TCTTCCTCCCGTACTTCGTCCGCCTCTAATGTAAATACACAAATTCATGG
CCATCAGGCGAGCAACCATCAGCAGCAGGAGGAGCAGCAGCAGCAGGGAT
TTAATAAGGGCGGGAATGACATTTTTACCTCTTCATCGGGAGGAGGGAAG
AAGGGAGGAAGAGAAGAACAGGATGACAGTGGCGGTGAAGTTGGTATGTT
TATGTAAAAAAGAGAAAACTCGAGGAAGAGAGTGAGGGATTACGCGCCAT
TTGGGGCGGTATGTGTTCTGTTTCTGTCTGTGTGGTGGTGGAGTGTCTAA
ATTGAAGCCGAAAACAAAGCGATTACAAAGGACAAAGATGAGTGCCGAAC
AGGAGTGAGAAACTATTTTCATA back to topprotein sequence of NO10G01020.2 >NO10G01020.2-protein ID=NO10G01020.2-protein|Name=NO10G01020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=630bp
MLSKLSKQRKHDTPWPGRIFLSVPVTLSERSDAALNHEGLPFYATHTHIT
CYEHKQTYSRGANNPDAGFRMAPHRQKPCTPHTQAMHLPNGALVLLVGAA
LFCCCCCCCQAYVPSPLFGPKRRSHPLPALRHAARPIARIAPFPPLRSTF
SSFFSERTGSNNSSSASNDNLSYELRLLELEGRLLKLEGLTARAAKAGGG
GGGGGGRGRAGGNVKGATGMGTSAFNHILPDGEQLLLGCTFAGAVLGLFV
GRALLNKQMYLGGVGGAVLGVHFFNQDGNFGAAIRAMGKLVLYACDRLAY
AWSEVKFNWKAWRVYERSFKKLESLDREMQVSQKIKAWDQQYGVSNNVNV
WFKKFQTSAKNLEESLKDQAIYWQRTQRLRDEQRQAQMIHQEVQRQQERE
RMRQNGGGVGGGSFKSGSGGIAEEGREQQQQQEKKGGGEGFHAAGDHENR
IKAGGFWPSHNDETSSSSTSTPSVAPRPSSYSSRVSSSPSSFSSSSSSLD
ATGAIGNGGSINGLQGRSGRLPSSSPSPSSSSSPTIASEFNRFVKSFGGT
TSGVSRSTHSPSSSRTSSASNVNTQIHGHQASNHQQQEEQQQQGFNKGGN
DIFTSSSGGGKKGGREEQDDSGGEVGMFM* back to topmRNA from alignment at chr10:312761..314968+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01020.2 ID=NO10G01020.2|Name=NO10G01020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp|location=Sequence derived from alignment at chr10:312761..314968+ (Nannochloropsis oceanica)
TCTGTAGTCTGTAGGTGTGCCTGTGGATTATGAAGTGTGTAGAGGGTGTG
TGTGGATTGTATTTACGATGCTGTCAAAGCTGTCAAAACAGAGGAAGCAC
GACACGCCGTGGCCCGGGCGCATTTTTCTTTCCGTGCCGGTCACGCTCAG
CGAGAGGAGCGATGCCGCGTTGAATCACGAGGGCTTACCTTTTTACGCAA
CCCACACTCACATAACATGCTATGAACACAAACAGACATACAGCCGAGGA
GCCAATAATCCGGACGCTGGTTTTCGAATGGCTCCGCACCGACAAAAGGT
GAGTCGCTGCTTTGACGCCCCTCTCCCTTTTTTAAAGTCTCCCTCTCAAA
CCCACAGCAACGTACGCATGCCCACACCTCGAGCCATGCACCCCACATAC
ACAGGCCATGCATCTGCCCAACGGGGCCCTGGTACTGCTCGTAGGTGCAG
CGCTCTTTTGCTGCTGCTGCTGTTGCTGTCAGGCATACGTCCCTTCCCCT
CTCTTTGGTCCCAAACGGCGTTCCCATCCCTTGCCCGCCTTACGCCACGC
TGCCCGCCCCATTGCCCGCATCGCCCCCTTCCCCCCTCTGCGCTCCACAT
TCTCCTCCTTCTTCTCTGAGCGGACAGGTTCAAATAACTCCTCCTCTGCC
TCCAACGATAATTTGTCGTATGAACTCCGTTTATTGGAGCTAGAAGGTCG
ACTTTTGAAATTGGAGGGCTTGACAGCCCGGGCCGCCAAGGCCGGTGGCG
GGGGAGGGGGAGGAGGAGGGAGGGGCAGGGCGGGGGGGAATGTAAAAGGT
GCAACGGGTATGGGGACGAGTGCTTTCAATCATATTTTACCGGACGGGGA
GCAGTTGCTGTTGGGATGTACCTTTGCGGGGGCTGTACTCGGTTTGTTTG
TAGGTCGGGCGTTGTTAAACAAGCAGATGTATTTGGGAGGGGTGGGGGGG
GCGGTGTTGGGGGTACATTTCTTTAATCAGGATGGAAATTTCGGCGCGGC
TATTCGGGCAATGGGAAAGTTGGTGCTGTACGCGTGTGATCGATTGGCCT
ATGCCTGGTCAGAGGTGAAGTTCAATTGGAAGGCATGGAGGGTTTATGAG
AGGAGTTTTAAAAAATTGGAGAGTTTGGATAGGGAGATGCAGGTGTCTCA
GAAGATCAAGGCTTGGGATCAACAATATGGGGTGTCGAATAATGTGAATG
TGTGGTTTAAAAAGTTTCAAACGTCGGCCAAAAACTTGGAAGAAAGTTTG
AAGGACCAAGCGATCTACTGGCAGCGGACCCAAAGGCTGCGCGATGAGCA
GAGACAGGCACAGATGATTCATCAAGAAGTTCAACGGCAGCAAGAGAGAG
AGCGGATGAGGCAGAATGGTGGAGGAGTGGGGGGAGGGTCGTTTAAGTCA
GGGAGTGGTGGTATTGCTGAGGAAGGGAGGGAGCAGCAGCAGCAGCAAGA
GAAGAAGGGAGGAGGTGAAGGTTTCCATGCAGCGGGTGACCATGAGAATA
GGATCAAGGCTGGCGGGTTCTGGCCATCACATAATGATGAAACTTCTTCC
TCTTCCACCTCCACTCCCTCCGTTGCTCCTCGACCTTCCTCCTACTCCTC
AAGGGTCTCTTCCTCACCCTCCTCCTTCTCGTCTTCCTCCTCATCCTTGG
ACGCGACCGGCGCCATAGGCAATGGTGGTAGTATCAATGGCCTCCAGGGA
CGGAGTGGCCGGTTGCCCTCTTCCTCGCCCTCCCCCTCTTCCTCGTCCTC
TCCTACGATAGCCTCGGAGTTCAACCGTTTTGTCAAGAGCTTCGGGGGGA
CCACAAGCGGTGTTTCCCGTTCCACTCACTCTCCATCTTCCTCCCGTACT
TCGTCCGCCTCTAATGTAAATACACAAATTCATGGCCATCAGGCGAGCAA
CCATCAGCAGCAGGAGGAGCAGCAGCAGCAGGGATTTAATAAGGGCGGGA
ATGACATTTTTACCTCTTCATCGGGAGGAGGGAAGAAGGGAGGAAGAGAA
GAACAGGATGACAGTGGCGGTGAAGTTGGTATGTTTATGTAAAAAAGAGA
AAACTCGAGGAAGAGAGTGAGGGATTACGCGCCATTTGGGGCGGTATGTG
TTCTGTTTCTGTCTGTGTGGTGGTGGAGTGTCTAAATTGAAGCCGAAAAC
AAAGCGATTACAAAGGACAAAGATGAGTGCCGAACAGGAGTGAGAAACTA
TTTTCATA back to topCoding sequence (CDS) from alignment at chr10:312761..314968+ >NO10G01020.2 ID=NO10G01020.2|Name=NO10G01020.2|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at chr10:312761..314968+ (Nannochloropsis oceanica)
ATGCTGTCAAAGCTGTCAAAACAGAGGAAGCACGACACGCCGTGGCCCGG
GCGCATTTTTCTTTCCGTGCCGGTCACGCTCAGCGAGAGGAGCGATGCCG
CGTTGAATCACGAGGGCTTACCTTTTTACGCAACCCACACTCACATAACA
TGCTATGAACACAAACAGACATACAGCCGAGGAGCCAATAATCCGGACGC
TGGTTTTCGAATGGCTCCGCACCGACAAAAGCCATGCACCCCACATACAC
AGGCCATGCATCTGCCCAACGGGGCCCTGGTACTGCTCGTAGGTGCAGCG
CTCTTTTGCTGCTGCTGCTGTTGCTGTCAGGCATACGTCCCTTCCCCTCT
CTTTGGTCCCAAACGGCGTTCCCATCCCTTGCCCGCCTTACGCCACGCTG
CCCGCCCCATTGCCCGCATCGCCCCCTTCCCCCCTCTGCGCTCCACATTC
TCCTCCTTCTTCTCTGAGCGGACAGGTTCAAATAACTCCTCCTCTGCCTC
CAACGATAATTTGTCGTATGAACTCCGTTTATTGGAGCTAGAAGGTCGAC
TTTTGAAATTGGAGGGCTTGACAGCCCGGGCCGCCAAGGCCGGTGGCGGG
GGAGGGGGAGGAGGAGGGAGGGGCAGGGCGGGGGGGAATGTAAAAGGTGC
AACGGGTATGGGGACGAGTGCTTTCAATCATATTTTACCGGACGGGGAGC
AGTTGCTGTTGGGATGTACCTTTGCGGGGGCTGTACTCGGTTTGTTTGTA
GGTCGGGCGTTGTTAAACAAGCAGATGTATTTGGGAGGGGTGGGGGGGGC
GGTGTTGGGGGTACATTTCTTTAATCAGGATGGAAATTTCGGCGCGGCTA
TTCGGGCAATGGGAAAGTTGGTGCTGTACGCGTGTGATCGATTGGCCTAT
GCCTGGTCAGAGGTGAAGTTCAATTGGAAGGCATGGAGGGTTTATGAGAG
GAGTTTTAAAAAATTGGAGAGTTTGGATAGGGAGATGCAGGTGTCTCAGA
AGATCAAGGCTTGGGATCAACAATATGGGGTGTCGAATAATGTGAATGTG
TGGTTTAAAAAGTTTCAAACGTCGGCCAAAAACTTGGAAGAAAGTTTGAA
GGACCAAGCGATCTACTGGCAGCGGACCCAAAGGCTGCGCGATGAGCAGA
GACAGGCACAGATGATTCATCAAGAAGTTCAACGGCAGCAAGAGAGAGAG
CGGATGAGGCAGAATGGTGGAGGAGTGGGGGGAGGGTCGTTTAAGTCAGG
GAGTGGTGGTATTGCTGAGGAAGGGAGGGAGCAGCAGCAGCAGCAAGAGA
AGAAGGGAGGAGGTGAAGGTTTCCATGCAGCGGGTGACCATGAGAATAGG
ATCAAGGCTGGCGGGTTCTGGCCATCACATAATGATGAAACTTCTTCCTC
TTCCACCTCCACTCCCTCCGTTGCTCCTCGACCTTCCTCCTACTCCTCAA
GGGTCTCTTCCTCACCCTCCTCCTTCTCGTCTTCCTCCTCATCCTTGGAC
GCGACCGGCGCCATAGGCAATGGTGGTAGTATCAATGGCCTCCAGGGACG
GAGTGGCCGGTTGCCCTCTTCCTCGCCCTCCCCCTCTTCCTCGTCCTCTC
CTACGATAGCCTCGGAGTTCAACCGTTTTGTCAAGAGCTTCGGGGGGACC
ACAAGCGGTGTTTCCCGTTCCACTCACTCTCCATCTTCCTCCCGTACTTC
GTCCGCCTCTAATGTAAATACACAAATTCATGGCCATCAGGCGAGCAACC
ATCAGCAGCAGGAGGAGCAGCAGCAGCAGGGATTTAATAAGGGCGGGAAT
GACATTTTTACCTCTTCATCGGGAGGAGGGAAGAAGGGAGGAAGAGAAGA
ACAGGATGACAGTGGCGGTGAAGTTGGTATGTTTATGTAA back to top
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