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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:312761..314968 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01020.1 vs.
Match: EWM25333.1 (hypothetical protein Naga_100196g4 [Nannochloropsis gaditana]) HSP 1 Score: 307.8 bits (787), Expect = 7.900e-80 Identity = 198/324 (61.11%), Postives = 231/324 (71.30%), Query Frame = 0
Query: 252 MYLGGVGGAVLGVHFFNQDGNFGAAIRAMGKLVLYACDRLAYAWSEVKFNWKAWRVYERSFKKLESLDREMQVSQKIKAWDQQYGVSNNVNVWFKKFQTSAKNLEESLKDQAIYWQRTQRLRDEQRQAQMIHQEVQRQQERERMRQNGGGVGGGSFKSGS------GGIAEEGREQQQQQEKKGGGEGFHAAGDHENRIKAGGFWPSHNDETSSSSTSTPSVAPRPSSYSSRVSSSPSSFSSSSSS---LDATGAIGNGGSINGLQGRSGRLPSSSPSPSSSSSPTIASEFNRFVKSFGGTTSGVSRSTH---SPSSSRTSSAS 564
MYLG VGGAVLGVHFFN++GNFGA IRA+GKLVLYACDRLAYAWSE+KFNWKAWRVYERSFKKLESLD+EMQVS+KIKAWDQQY VS N+N W++KFQTSAK LEESLK+QA+YWQRTQRLRDEQRQAQMIHQE+QRQQERER RQNGGGV GG+F+S S + E EQ + +G GEG R+ AGG W + + +S TP+ P+P+S+ S +SP S SS+SS LD GA+G G GR P SSP +A EFNRFVKS GG TSG+SRS++ SP S +S AS
Sbjct: 1 MYLGSVGGAVLGVHFFNKEGNFGACIRALGKLVLYACDRLAYAWSELKFNWKAWRVYERSFKKLESLDKEMQVSKKIKAWDQQYQVSTNLNGWWRKFQTSAKGLEESLKEQAVYWQRTQRLRDEQRQAQMIHQEIQRQQERERARQNGGGVSGGAFQSTSVETEAPASLRPES-EQGEGARGQGRGEGVPLTAQGP-RLGAGGGWSA---PRAQASALTPASGPQPASHPSHPGASPPSHFSSTSSRQGLDTPGAVG---------GPGGR-------PPPPSSPGLAFEFNRFVKSLGGATSGISRSSNPAASPVPSPSSPAS 303
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01020.1 ID=NO10G01020.1|Name=NO10G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2102bp
TCTGTAGTCTGTAGGTGTGCCTGTGGATTATGAAGTGTGTAGAGGGTGTG
TGTGGATTGTATTTACGATGCTGTCAAAGCTGTCAAAACAGAGGAAGCAC
GACACGCCGTGGCCCGGGCGCATTTTTCTTTCCGTGCCGGTCACGCTCAG
CGAGAGGAGCGATGCCGCGTTGAATCACGAGGGCTTACCTTTTTACGCAA
CCCACACTCACATAACATGCTATGAACACAAACAGACATACAGCCGAGGA
GCCAATAATCCGGACGCTGGTTTTCGAATGGCTCCGCACCGACAAAAGGC
CATGCATCTGCCCAACGGGGCCCTGGTACTGCTCGTAGGTGCAGCGCTCT
TTTGCTGCTGCTGCTGTTGCTGTCAGGCATACGTCCCTTCCCCTCTCTTT
GGTCCCAAACGGCGTTCCCATCCCTTGCCCGCCTTACGCCACGCTGCCCG
CCCCATTGCCCGCATCGCCCCCTTCCCCCCTCTGCGCTCCACATTCTCCT
CCTTCTTCTCTGAGCGGACAGGTTCAAATAACTCCTCCTCTGCCTCCAAC
GATAATTTGTCGTATGAACTCCGTTTATTGGAGCTAGAAGGTCGACTTTT
GAAATTGGAGGGCTTGACAGCCCGGGCCGCCAAGGCCGGTGGCGGGGGAG
GGGGAGGAGGAGGGAGGGGCAGGGCGGGGGGGAATGTAAAAGGTGCAACG
GGTATGGGGACGAGTGCTTTCAATCATATTTTACCGGACGGGGAGCAGTT
GCTGTTGGGATGTACCTTTGCGGGGGCTGTACTCGGTTTGTTTGTAGGTC
GGGCGTTGTTAAACAAGCAGATGTATTTGGGAGGGGTGGGGGGGGCGGTG
TTGGGGGTACATTTCTTTAATCAGGATGGAAATTTCGGCGCGGCTATTCG
GGCAATGGGAAAGTTGGTGCTGTACGCGTGTGATCGATTGGCCTATGCCT
GGTCAGAGGTGAAGTTCAATTGGAAGGCATGGAGGGTTTATGAGAGGAGT
TTTAAAAAATTGGAGAGTTTGGATAGGGAGATGCAGGTGTCTCAGAAGAT
CAAGGCTTGGGATCAACAATATGGGGTGTCGAATAATGTGAATGTGTGGT
TTAAAAAGTTTCAAACGTCGGCCAAAAACTTGGAAGAAAGTTTGAAGGAC
CAAGCGATCTACTGGCAGCGGACCCAAAGGCTGCGCGATGAGCAGAGACA
GGCACAGATGATTCATCAAGAAGTTCAACGGCAGCAAGAGAGAGAGCGGA
TGAGGCAGAATGGTGGAGGAGTGGGGGGAGGGTCGTTTAAGTCAGGGAGT
GGTGGTATTGCTGAGGAAGGGAGGGAGCAGCAGCAGCAGCAAGAGAAGAA
GGGAGGAGGTGAAGGTTTCCATGCAGCGGGTGACCATGAGAATAGGATCA
AGGCTGGCGGGTTCTGGCCATCACATAATGATGAAACTTCTTCCTCTTCC
ACCTCCACTCCCTCCGTTGCTCCTCGACCTTCCTCCTACTCCTCAAGGGT
CTCTTCCTCACCCTCCTCCTTCTCGTCTTCCTCCTCATCCTTGGACGCGA
CCGGCGCCATAGGCAATGGTGGTAGTATCAATGGCCTCCAGGGACGGAGT
GGCCGGTTGCCCTCTTCCTCGCCCTCCCCCTCTTCCTCGTCCTCTCCTAC
GATAGCCTCGGAGTTCAACCGTTTTGTCAAGAGCTTCGGGGGGACCACAA
GCGGTGTTTCCCGTTCCACTCACTCTCCATCTTCCTCCCGTACTTCGTCC
GCCTCTAATGTAAATACACAAATTCATGGCCATCAGGCGAGCAACCATCA
GCAGCAGGAGGAGCAGCAGCAGCAGGGATTTAATAAGGGCGGGAATGACA
TTTTTACCTCTTCATCGGGAGGAGGGAAGAAGGGAGGAAGAGAAGAACAG
GATGACAGTGGCGGTGAAGTTGGTATGTTTATGTAAAAAAGAGAAAACTC
GAGGAAGAGAGTGAGGGATTACGCGCCATTTGGGGCGGTATGTGTTCTGT
TTCTGTCTGTGTGGTGGTGGAGTGTCTAAATTGAAGCCGAAAACAAAGCG
ATTACAAAGGACAAAGATGAGTGCCGAACAGGAGTGAGAAACTATTTTCA
TA back to topprotein sequence of NO10G01020.1 >NO10G01020.1-protein ID=NO10G01020.1-protein|Name=NO10G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp
MLSKLSKQRKHDTPWPGRIFLSVPVTLSERSDAALNHEGLPFYATHTHIT
CYEHKQTYSRGANNPDAGFRMAPHRQKAMHLPNGALVLLVGAALFCCCCC
CCQAYVPSPLFGPKRRSHPLPALRHAARPIARIAPFPPLRSTFSSFFSER
TGSNNSSSASNDNLSYELRLLELEGRLLKLEGLTARAAKAGGGGGGGGGR
GRAGGNVKGATGMGTSAFNHILPDGEQLLLGCTFAGAVLGLFVGRALLNK
QMYLGGVGGAVLGVHFFNQDGNFGAAIRAMGKLVLYACDRLAYAWSEVKF
NWKAWRVYERSFKKLESLDREMQVSQKIKAWDQQYGVSNNVNVWFKKFQT
SAKNLEESLKDQAIYWQRTQRLRDEQRQAQMIHQEVQRQQERERMRQNGG
GVGGGSFKSGSGGIAEEGREQQQQQEKKGGGEGFHAAGDHENRIKAGGFW
PSHNDETSSSSTSTPSVAPRPSSYSSRVSSSPSSFSSSSSSLDATGAIGN
GGSINGLQGRSGRLPSSSPSPSSSSSPTIASEFNRFVKSFGGTTSGVSRS
THSPSSSRTSSASNVNTQIHGHQASNHQQQEEQQQQGFNKGGNDIFTSSS
GGGKKGGREEQDDSGGEVGMFM* back to topmRNA from alignment at chr10:312761..314968+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01020.1 ID=NO10G01020.1|Name=NO10G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp|location=Sequence derived from alignment at chr10:312761..314968+ (Nannochloropsis oceanica)
TCTGTAGTCTGTAGGTGTGCCTGTGGATTATGAAGTGTGTAGAGGGTGTG
TGTGGATTGTATTTACGATGCTGTCAAAGCTGTCAAAACAGAGGAAGCAC
GACACGCCGTGGCCCGGGCGCATTTTTCTTTCCGTGCCGGTCACGCTCAG
CGAGAGGAGCGATGCCGCGTTGAATCACGAGGGCTTACCTTTTTACGCAA
CCCACACTCACATAACATGCTATGAACACAAACAGACATACAGCCGAGGA
GCCAATAATCCGGACGCTGGTTTTCGAATGGCTCCGCACCGACAAAAGGT
GAGTCGCTGCTTTGACGCCCCTCTCCCTTTTTTAAAGTCTCCCTCTCAAA
CCCACAGCAACGTACGCATGCCCACACCTCGAGCCATGCACCCCACATAC
ACAGGCCATGCATCTGCCCAACGGGGCCCTGGTACTGCTCGTAGGTGCAG
CGCTCTTTTGCTGCTGCTGCTGTTGCTGTCAGGCATACGTCCCTTCCCCT
CTCTTTGGTCCCAAACGGCGTTCCCATCCCTTGCCCGCCTTACGCCACGC
TGCCCGCCCCATTGCCCGCATCGCCCCCTTCCCCCCTCTGCGCTCCACAT
TCTCCTCCTTCTTCTCTGAGCGGACAGGTTCAAATAACTCCTCCTCTGCC
TCCAACGATAATTTGTCGTATGAACTCCGTTTATTGGAGCTAGAAGGTCG
ACTTTTGAAATTGGAGGGCTTGACAGCCCGGGCCGCCAAGGCCGGTGGCG
GGGGAGGGGGAGGAGGAGGGAGGGGCAGGGCGGGGGGGAATGTAAAAGGT
GCAACGGGTATGGGGACGAGTGCTTTCAATCATATTTTACCGGACGGGGA
GCAGTTGCTGTTGGGATGTACCTTTGCGGGGGCTGTACTCGGTTTGTTTG
TAGGTCGGGCGTTGTTAAACAAGCAGATGTATTTGGGAGGGGTGGGGGGG
GCGGTGTTGGGGGTACATTTCTTTAATCAGGATGGAAATTTCGGCGCGGC
TATTCGGGCAATGGGAAAGTTGGTGCTGTACGCGTGTGATCGATTGGCCT
ATGCCTGGTCAGAGGTGAAGTTCAATTGGAAGGCATGGAGGGTTTATGAG
AGGAGTTTTAAAAAATTGGAGAGTTTGGATAGGGAGATGCAGGTGTCTCA
GAAGATCAAGGCTTGGGATCAACAATATGGGGTGTCGAATAATGTGAATG
TGTGGTTTAAAAAGTTTCAAACGTCGGCCAAAAACTTGGAAGAAAGTTTG
AAGGACCAAGCGATCTACTGGCAGCGGACCCAAAGGCTGCGCGATGAGCA
GAGACAGGCACAGATGATTCATCAAGAAGTTCAACGGCAGCAAGAGAGAG
AGCGGATGAGGCAGAATGGTGGAGGAGTGGGGGGAGGGTCGTTTAAGTCA
GGGAGTGGTGGTATTGCTGAGGAAGGGAGGGAGCAGCAGCAGCAGCAAGA
GAAGAAGGGAGGAGGTGAAGGTTTCCATGCAGCGGGTGACCATGAGAATA
GGATCAAGGCTGGCGGGTTCTGGCCATCACATAATGATGAAACTTCTTCC
TCTTCCACCTCCACTCCCTCCGTTGCTCCTCGACCTTCCTCCTACTCCTC
AAGGGTCTCTTCCTCACCCTCCTCCTTCTCGTCTTCCTCCTCATCCTTGG
ACGCGACCGGCGCCATAGGCAATGGTGGTAGTATCAATGGCCTCCAGGGA
CGGAGTGGCCGGTTGCCCTCTTCCTCGCCCTCCCCCTCTTCCTCGTCCTC
TCCTACGATAGCCTCGGAGTTCAACCGTTTTGTCAAGAGCTTCGGGGGGA
CCACAAGCGGTGTTTCCCGTTCCACTCACTCTCCATCTTCCTCCCGTACT
TCGTCCGCCTCTAATGTAAATACACAAATTCATGGCCATCAGGCGAGCAA
CCATCAGCAGCAGGAGGAGCAGCAGCAGCAGGGATTTAATAAGGGCGGGA
ATGACATTTTTACCTCTTCATCGGGAGGAGGGAAGAAGGGAGGAAGAGAA
GAACAGGATGACAGTGGCGGTGAAGTTGGTATGTTTATGTAAAAAAGAGA
AAACTCGAGGAAGAGAGTGAGGGATTACGCGCCATTTGGGGCGGTATGTG
TTCTGTTTCTGTCTGTGTGGTGGTGGAGTGTCTAAATTGAAGCCGAAAAC
AAAGCGATTACAAAGGACAAAGATGAGTGCCGAACAGGAGTGAGAAACTA
TTTTCATA back to topCoding sequence (CDS) from alignment at chr10:312761..314968+ >NO10G01020.1 ID=NO10G01020.1|Name=NO10G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=1869bp|location=Sequence derived from alignment at chr10:312761..314968+ (Nannochloropsis oceanica)
ATGCTGTCAAAGCTGTCAAAACAGAGGAAGCACGACACGCCGTGGCCCGG
GCGCATTTTTCTTTCCGTGCCGGTCACGCTCAGCGAGAGGAGCGATGCCG
CGTTGAATCACGAGGGCTTACCTTTTTACGCAACCCACACTCACATAACA
TGCTATGAACACAAACAGACATACAGCCGAGGAGCCAATAATCCGGACGC
TGGTTTTCGAATGGCTCCGCACCGACAAAAGGCCATGCATCTGCCCAACG
GGGCCCTGGTACTGCTCGTAGGTGCAGCGCTCTTTTGCTGCTGCTGCTGT
TGCTGTCAGGCATACGTCCCTTCCCCTCTCTTTGGTCCCAAACGGCGTTC
CCATCCCTTGCCCGCCTTACGCCACGCTGCCCGCCCCATTGCCCGCATCG
CCCCCTTCCCCCCTCTGCGCTCCACATTCTCCTCCTTCTTCTCTGAGCGG
ACAGGTTCAAATAACTCCTCCTCTGCCTCCAACGATAATTTGTCGTATGA
ACTCCGTTTATTGGAGCTAGAAGGTCGACTTTTGAAATTGGAGGGCTTGA
CAGCCCGGGCCGCCAAGGCCGGTGGCGGGGGAGGGGGAGGAGGAGGGAGG
GGCAGGGCGGGGGGGAATGTAAAAGGTGCAACGGGTATGGGGACGAGTGC
TTTCAATCATATTTTACCGGACGGGGAGCAGTTGCTGTTGGGATGTACCT
TTGCGGGGGCTGTACTCGGTTTGTTTGTAGGTCGGGCGTTGTTAAACAAG
CAGATGTATTTGGGAGGGGTGGGGGGGGCGGTGTTGGGGGTACATTTCTT
TAATCAGGATGGAAATTTCGGCGCGGCTATTCGGGCAATGGGAAAGTTGG
TGCTGTACGCGTGTGATCGATTGGCCTATGCCTGGTCAGAGGTGAAGTTC
AATTGGAAGGCATGGAGGGTTTATGAGAGGAGTTTTAAAAAATTGGAGAG
TTTGGATAGGGAGATGCAGGTGTCTCAGAAGATCAAGGCTTGGGATCAAC
AATATGGGGTGTCGAATAATGTGAATGTGTGGTTTAAAAAGTTTCAAACG
TCGGCCAAAAACTTGGAAGAAAGTTTGAAGGACCAAGCGATCTACTGGCA
GCGGACCCAAAGGCTGCGCGATGAGCAGAGACAGGCACAGATGATTCATC
AAGAAGTTCAACGGCAGCAAGAGAGAGAGCGGATGAGGCAGAATGGTGGA
GGAGTGGGGGGAGGGTCGTTTAAGTCAGGGAGTGGTGGTATTGCTGAGGA
AGGGAGGGAGCAGCAGCAGCAGCAAGAGAAGAAGGGAGGAGGTGAAGGTT
TCCATGCAGCGGGTGACCATGAGAATAGGATCAAGGCTGGCGGGTTCTGG
CCATCACATAATGATGAAACTTCTTCCTCTTCCACCTCCACTCCCTCCGT
TGCTCCTCGACCTTCCTCCTACTCCTCAAGGGTCTCTTCCTCACCCTCCT
CCTTCTCGTCTTCCTCCTCATCCTTGGACGCGACCGGCGCCATAGGCAAT
GGTGGTAGTATCAATGGCCTCCAGGGACGGAGTGGCCGGTTGCCCTCTTC
CTCGCCCTCCCCCTCTTCCTCGTCCTCTCCTACGATAGCCTCGGAGTTCA
ACCGTTTTGTCAAGAGCTTCGGGGGGACCACAAGCGGTGTTTCCCGTTCC
ACTCACTCTCCATCTTCCTCCCGTACTTCGTCCGCCTCTAATGTAAATAC
ACAAATTCATGGCCATCAGGCGAGCAACCATCAGCAGCAGGAGGAGCAGC
AGCAGCAGGGATTTAATAAGGGCGGGAATGACATTTTTACCTCTTCATCG
GGAGGAGGGAAGAAGGGAGGAAGAGAAGAACAGGATGACAGTGGCGGTGA
AGTTGGTATGTTTATGTAA back to top
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