NO09G01190, NO09G01190 (gene) Nannochloropsis oceanica

Overview
NameNO09G01190
Unique NameNO09G01190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1053
Alignment locationchr9:387608..388660 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:387608..388660 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G01190 vs. NCBI_GenBank
Match: EWM27675.1 (hypothetical protein Naga_100125g8 [Nannochloropsis gaditana])

HSP 1 Score: 67.0 bits (162), Expect = 6.000e-8
Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 0 
Query:    1 MSKALTKQLYEGLQKKLAVTLAPKKGIGVKAQATKKTXXXXXXXXXKTMRRKHLKASKKATDAKTGVEASPESILAKNVRLLKKLGAHRTQQDVLEQV 99
            MSKAL+KQL++ LQ KLA   + +   G    A +K          KT RR+ LK+SKKAT        +  +   +NVRLLKKLGAHRTQ +VL+QV
Sbjct:    1 MSKALSKQLFKRLQDKLATNTSAQ---GSTDTAAQKNGAGRNKGGHKTKRRQQLKSSKKATVRTIAKNKASRATREENVRLLKKLGAHRTQAEVLQQV 95
The following BLAST results are available for this feature:
BLAST of NO09G01190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27675.16.000e-845.92hypothetical protein Naga_100125g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100125g8gene2894Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01190.1NO09G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G01190.2NO09G01190.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G01190.3NO09G01190.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01190.1NO09G01190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G01190.2NO09G01190.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G01190.3NO09G01190.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01190 ID=NO09G01190|Name=NO09G01190|organism=Nannochloropsis oceanica|type=gene|length=1053bp
CTCCATTTTGTTTTGTTTGCTTTTTACTTCAGTGTTGATTACGAGGGCAC
TGTCATACATGGCAGGCTTTTTTATGAGAACACGATCTGCGTTTTGAAGC
ACCAGAAGTTTGTCTCGAGGAAGTATGGTTCTATCGACCACCTGATATTC
TTTGATTTATTCTTTTGTATGGTAAAGCGTGGGCCTGGATTTTATTTCGC
ACCTGGTCTGCGGCGGGAGCAAAAGGGCGTTCCAACGTATTTGAAGCGCT
CTGCAGCAACTCCACGCACCGTGTCCACCTTATCTGCTCTATTTTATAGG
CAAAATAGAATACAGCTAGGCCAGTGACACCAGCCCGCTGTCCTTCGGAT
TGCAATGTGCACACCAGACCCTGGGCACGTACAGGTGGGAGTTTGGCATG
AGCTGGGCGAAGGGGCTCATCATAAGATCCCTGAGGCTTACACGCCTTCT
CATTCCAAAGCCCACCACACAGGCCCCACATGTCAAAGGCATTGACTAAG
CAGCTCTACGAGGGCCTGCAGAAAAAGCTTGCGGTCACCTTGGCGCCCAA
GAAGGGAATCGGGGTCAAAGCACAGGCAACCAAGAAAACGACAGGCGGTG
CGAGAGGTGGCGGAGGCAAGACGATGAGAAGGAAACACTTGAAGGCCAGC
AAGAAGGCTACGGACGCAAAAACTGGTGTAGAGGCATCTCCAGAGAGTAT
CCTGGCTAAAAACGTTCGGTTGCTTAAGAAGCTGGGTGCGCATCGAACTC
AACAGGACGTGTTGGAACAGgtaaggcatgtgcgcccgtcgtcttcctcc
attcagttgcctctatttggactcaccctcagctctcaaagtcttatgac
ttcatttcaagttgattctgtaccttgctcatttctgccccacctccatt
cacctcatttgaatgcagGTTTTGAGAAGATAAGCTTGAGTGCTGAAGCG
CAGTAACAATAGCAGGTTGGATGAGAAAAAGAGACTCAGCTCTATCCCGC
GCTGTATGTAAATGAACAATCATCGAAGTAACCAAACCGAACGATGTGTG
TGC
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protein sequence of NO09G01190.1

>NO09G01190.1-protein ID=NO09G01190.1-protein|Name=NO09G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSKALTKQLYEGLQKKLAVTLAPKKGIGVKAQATKKTTGGARGGGGKTMR
RKHLKASKKATDAKTGVEASPESILAKNVRLLKKLGAHRTQQDVLEQVLR
R*
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protein sequence of NO09G01190.2

>NO09G01190.2-protein ID=NO09G01190.2-protein|Name=NO09G01190.2|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MSKALTKQLYEGLQKKLAVTLAPKKGIGVKAQATKKTTGGARGGGGKTMR
RKHLKASKKATDAKTGVEASPESILAKNVRLLKKLGAHRTQQDVLEQVRH
VRPSSSSIQLPLFGLTLSSQSLMTSFQVDSVPCSFLPHLHSPHLNAGFEK
ISLSAEAQ*
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protein sequence of NO09G01190.3

>NO09G01190.3-protein ID=NO09G01190.3-protein|Name=NO09G01190.3|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSKALTKQLYEGLQKKLAVTLAPKKGIGVKAQATKKTTGGARGGGGKTMR
RKHLKASKKATDAKTGVEASPESILAKNVRLLKKLGAHRTQQDVLEQVLR
R*
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Synonyms
Publications