NO09G01190.2, NO09G01190.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01190.2
Unique NameNO09G01190.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length965
Alignment locationchr9:387608..388660 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:387608..388660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G01190.2 vs.
Match: EWM27675.1 (hypothetical protein Naga_100125g8 [Nannochloropsis gaditana])

HSP 1 Score: 71.2 bits (173), Expect = 3.200e-9
Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = 0 
Query:    1 MSKALTKQLYEGLQKKLAVTLAPKKGIGVKAQATKKTTGGARGGGGKTMRRKHLKASKKATDAKTGVEASPESILAKNVRLLKKLGAHRTQQDVLEQV 99
            MSKAL+KQL++ LQ KLA   + +   G    A +K   G   GG KT RR+ LK+SKKAT        +  +   +NVRLLKKLGAHRTQ +VL+QV
Sbjct:    1 MSKALSKQLFKRLQDKLATNTSAQ---GSTDTAAQKNGAGRNKGGHKTKRRQQLKSSKKATVRTIAKNKASRATREENVRLLKKLGAHRTQAEVLQQV 95
The following BLAST results are available for this feature:
BLAST of NO09G01190.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27675.13.200e-948.98hypothetical protein Naga_100125g8 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01190NO09G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01190.2NO09G01190.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01190.2.cds1NO09G01190.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01190.2 ID=NO09G01190.2|Name=NO09G01190.2|organism=Nannochloropsis oceanica|type=mRNA|length=965bp
CTCCATTTTGTTTTGTTTGCTTTTTACTTCAGTGTTGATTACGAGGGCAC
TGTCATACATGGCAGGCTTTTTTATGAGAACACGATCTGCGTTTTGAAGC
ACCAGAAGTTTGTCTCGAGGAAGTATGGTTCTATCGACCACCTGATATTC
TTTGATTTATTCTTTTGTATGGTAAAGCGTGGGCCTGGATTTTATTTCGC
ACCTGGTCTGCGGCGGGAGCAAAAGGGCGTTCCAACGTATTTGAAGCGCT
CTGCAGCAACTCCACGCACCGTGTCCACCTTATCTGCTCTATTTTATAGG
CAAAATAGAATACAGCTAGGCCAGTGACACCAGCCCGCTGTCCTTCGGAT
TGCAATGTGCACACCAGACCCTGGGCACGTACAGGCCCCACATGTCAAAG
GCATTGACTAAGCAGCTCTACGAGGGCCTGCAGAAAAAGCTTGCGGTCAC
CTTGGCGCCCAAGAAGGGAATCGGGGTCAAAGCACAGGCAACCAAGAAAA
CGACAGGCGGTGCGAGAGGTGGCGGAGGCAAGACGATGAGAAGGAAACAC
TTGAAGGCCAGCAAGAAGGCTACGGACGCAAAAACTGGTGTAGAGGCATC
TCCAGAGAGTATCCTGGCTAAAAACGTTCGGTTGCTTAAGAAGCTGGGTG
CGCATCGAACTCAACAGGACGTGTTGGAACAGGTAAGGCATGTGCGCCCG
TCGTCTTCCTCCATTCAGTTGCCTCTATTTGGACTCACCCTCAGCTCTCA
AAGTCTTATGACTTCATTTCAAGTTGATTCTGTACCTTGCTCATTTCTGC
CCCACCTCCATTCACCTCATTTGAATGCAGGTTTTGAGAAGATAAGCTTG
AGTGCTGAAGCGCAGTAACAATAGCAGGTTGGATGAGAAAAAGAGACTCA
GCTCTATCCCGCGCTGTATGTAAATGAACAATCATCGAAGTAACCAAACC
GAACGATGTGTGTGC
back to top

protein sequence of NO09G01190.2

>NO09G01190.2-protein ID=NO09G01190.2-protein|Name=NO09G01190.2|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MSKALTKQLYEGLQKKLAVTLAPKKGIGVKAQATKKTTGGARGGGGKTMR
RKHLKASKKATDAKTGVEASPESILAKNVRLLKKLGAHRTQQDVLEQVRH
VRPSSSSIQLPLFGLTLSSQSLMTSFQVDSVPCSFLPHLHSPHLNAGFEK
ISLSAEAQ*
back to top

mRNA from alignment at chr9:387608..388660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01190.2 ID=NO09G01190.2|Name=NO09G01190.2|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp|location=Sequence derived from alignment at chr9:387608..388660+ (Nannochloropsis oceanica)
CTCCATTTTGTTTTGTTTGCTTTTTACTTCAGTGTTGATTACGAGGGCAC
TGTCATACATGGCAGGCTTTTTTATGAGAACACGATCTGCGTTTTGAAGC
ACCAGAAGTTTGTCTCGAGGAAGTATGGTTCTATCGACCACCTGATATTC
TTTGATTTATTCTTTTGTATGGTAAAGCGTGGGCCTGGATTTTATTTCGC
ACCTGGTCTGCGGCGGGAGCAAAAGGGCGTTCCAACGTATTTGAAGCGCT
CTGCAGCAACTCCACGCACCGTGTCCACCTTATCTGCTCTATTTTATAGG
CAAAATAGAATACAGCTAGGCCAGTGACACCAGCCCGCTGTCCTTCGGAT
TGCAATGTGCACACCAGACCCTGGGCACGTACAGGTGGGAGTTTGGCATG
AGCTGGGCGAAGGGGCTCATCATAAGATCCCTGAGGCTTACACGCCTTCT
CATTCCAAAGCCCACCACACAGGCCCCACATGTCAAAGGCATTGACTAAG
CAGCTCTACGAGGGCCTGCAGAAAAAGCTTGCGGTCACCTTGGCGCCCAA
GAAGGGAATCGGGGTCAAAGCACAGGCAACCAAGAAAACGACAGGCGGTG
CGAGAGGTGGCGGAGGCAAGACGATGAGAAGGAAACACTTGAAGGCCAGC
AAGAAGGCTACGGACGCAAAAACTGGTGTAGAGGCATCTCCAGAGAGTAT
CCTGGCTAAAAACGTTCGGTTGCTTAAGAAGCTGGGTGCGCATCGAACTC
AACAGGACGTGTTGGAACAGGTAAGGCATGTGCGCCCGTCGTCTTCCTCC
ATTCAGTTGCCTCTATTTGGACTCACCCTCAGCTCTCAAAGTCTTATGAC
TTCATTTCAAGTTGATTCTGTACCTTGCTCATTTCTGCCCCACCTCCATT
CACCTCATTTGAATGCAGGTTTTGAGAAGATAAGCTTGAGTGCTGAAGCG
CAGTAACAATAGCAGGTTGGATGAGAAAAAGAGACTCAGCTCTATCCCGC
GCTGTATGTAAATGAACAATCATCGAAGTAACCAAACCGAACGATGTGTG
TGC
back to top

Coding sequence (CDS) from alignment at chr9:387608..388660+

>NO09G01190.2 ID=NO09G01190.2|Name=NO09G01190.2|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr9:387608..388660+ (Nannochloropsis oceanica)
ATGTCAAAGGCATTGACTAAGCAGCTCTACGAGGGCCTGCAGAAAAAGCT
TGCGGTCACCTTGGCGCCCAAGAAGGGAATCGGGGTCAAAGCACAGGCAA
CCAAGAAAACGACAGGCGGTGCGAGAGGTGGCGGAGGCAAGACGATGAGA
AGGAAACACTTGAAGGCCAGCAAGAAGGCTACGGACGCAAAAACTGGTGT
AGAGGCATCTCCAGAGAGTATCCTGGCTAAAAACGTTCGGTTGCTTAAGA
AGCTGGGTGCGCATCGAACTCAACAGGACGTGTTGGAACAGGTAAGGCAT
GTGCGCCCGTCGTCTTCCTCCATTCAGTTGCCTCTATTTGGACTCACCCT
CAGCTCTCAAAGTCTTATGACTTCATTTCAAGTTGATTCTGTACCTTGCT
CATTTCTGCCCCACCTCCATTCACCTCATTTGAATGCAGGTTTTGAGAAG
ATAAGCTTGAGTGCTGAAGCGCAGTAA
back to top
Synonyms
Publications