NO09G01190.1, NO09G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01190.1
Unique NameNO09G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length829
Alignment locationchr9:387608..388660 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:387608..388660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G01190.1 vs.
Match: EWM27675.1 (hypothetical protein Naga_100125g8 [Nannochloropsis gaditana])

HSP 1 Score: 74.3 bits (181), Expect = 2.400e-10
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 0
Query:    1 MSKALTKQLYEGLQKKLAVTLAPKKGIGVKAQATKKTTGGARGGGGKTMRRKHLKASKKATDAKTGVEASPESILAKNVRLLKKLGAHRTQQDVLEQVLRR 102
            MSKAL+KQL++ LQ KLA   + +   G    A +K   G   GG KT RR+ LK+SKKAT        +  +   +NVRLLKKLGAHRTQ +VL+QVL++
Sbjct:    1 MSKALSKQLFKRLQDKLATNTSAQ---GSTDTAAQKNGAGRNKGGHKTKRRQQLKSSKKATVRTIAKNKASRATREENVRLLKKLGAHRTQAEVLQQVLKK 98          
The following BLAST results are available for this feature:
BLAST of NO09G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27675.12.400e-1048.51hypothetical protein Naga_100125g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01190NO09G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01190.1NO09G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01190.1.cds1NO09G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01190.1.cds2NO09G01190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01190.1 ID=NO09G01190.1|Name=NO09G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=829bp
CTCCATTTTGTTTTGTTTGCTTTTTACTTCAGTGTTGATTACGAGGGCAC
TGTCATACATGGCAGGCTTTTTTATGAGAACACGATCTGCGTTTTGAAGC
ACCAGAAGTTTGTCTCGAGGAAGTATGGTTCTATCGACCACCTGATATTC
TTTGATTTATTCTTTTGTATGGTAAAGCGTGGGCCTGGATTTTATTTCGC
ACCTGGTCTGCGGCGGGAGCAAAAGGGCGTTCCAACGTATTTGAAGCGCT
CTGCAGCAACTCCACGCACCGTGTCCACCTTATCTGCTCTATTTTATAGG
CAAAATAGAATACAGCTAGGCCAGTGACACCAGCCCGCTGTCCTTCGGAT
TGCAATGTGCACACCAGACCCTGGGCACGTACAGCCCACCACACAGGCCC
CACATGTCAAAGGCATTGACTAAGCAGCTCTACGAGGGCCTGCAGAAAAA
GCTTGCGGTCACCTTGGCGCCCAAGAAGGGAATCGGGGTCAAAGCACAGG
CAACCAAGAAAACGACAGGCGGTGCGAGAGGTGGCGGAGGCAAGACGATG
AGAAGGAAACACTTGAAGGCCAGCAAGAAGGCTACGGACGCAAAAACTGG
TGTAGAGGCATCTCCAGAGAGTATCCTGGCTAAAAACGTTCGGTTGCTTA
AGAAGCTGGGTGCGCATCGAACTCAACAGGACGTGTTGGAACAGGTTTTG
AGAAGATAAGCTTGAGTGCTGAAGCGCAGTAACAATAGCAGGTTGGATGA
GAAAAAGAGACTCAGCTCTATCCCGCGCTGTATGTAAATGAACAATCATC
GAAGTAACCAAACCGAACGATGTGTGTGC
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protein sequence of NO09G01190.1

>NO09G01190.1-protein ID=NO09G01190.1-protein|Name=NO09G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSKALTKQLYEGLQKKLAVTLAPKKGIGVKAQATKKTTGGARGGGGKTMR
RKHLKASKKATDAKTGVEASPESILAKNVRLLKKLGAHRTQQDVLEQVLR
R*
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mRNA from alignment at chr9:387608..388660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01190.1 ID=NO09G01190.1|Name=NO09G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp|location=Sequence derived from alignment at chr9:387608..388660+ (Nannochloropsis oceanica)
CTCCATTTTGTTTTGTTTGCTTTTTACTTCAGTGTTGATTACGAGGGCAC TGTCATACATGGCAGGCTTTTTTATGAGAACACGATCTGCGTTTTGAAGC ACCAGAAGTTTGTCTCGAGGAAGTATGGTTCTATCGACCACCTGATATTC TTTGATTTATTCTTTTGTATGGTAAAGCGTGGGCCTGGATTTTATTTCGC ACCTGGTCTGCGGCGGGAGCAAAAGGGCGTTCCAACGTATTTGAAGCGCT CTGCAGCAACTCCACGCACCGTGTCCACCTTATCTGCTCTATTTTATAGG CAAAATAGAATACAGCTAGGCCAGTGACACCAGCCCGCTGTCCTTCGGAT TGCAATGTGCACACCAGACCCTGGGCACGTACAGGTGGGAGTTTGGCATG AGCTGGGCGAAGGGGCTCATCATAAGATCCCTGAGGCTTACACGCCTTCT CATTCCAAAGCCCACCACACAGGCCCCACATGTCAAAGGCATTGACTAAG CAGCTCTACGAGGGCCTGCAGAAAAAGCTTGCGGTCACCTTGGCGCCCAA GAAGGGAATCGGGGTCAAAGCACAGGCAACCAAGAAAACGACAGGCGGTG CGAGAGGTGGCGGAGGCAAGACGATGAGAAGGAAACACTTGAAGGCCAGC AAGAAGGCTACGGACGCAAAAACTGGTGTAGAGGCATCTCCAGAGAGTAT CCTGGCTAAAAACGTTCGGTTGCTTAAGAAGCTGGGTGCGCATCGAACTC AACAGGACGTGTTGGAACAGGTAAGGCATGTGCGCCCGTCGTCTTCCTCC ATTCAGTTGCCTCTATTTGGACTCACCCTCAGCTCTCAAAGTCTTATGAC TTCATTTCAAGTTGATTCTGTACCTTGCTCATTTCTGCCCCACCTCCATT CACCTCATTTGAATGCAGGTTTTGAGAAGATAAGCTTGAGTGCTGAAGCG CAGTAACAATAGCAGGTTGGATGAGAAAAAGAGACTCAGCTCTATCCCGC GCTGTATGTAAATGAACAATCATCGAAGTAACCAAACCGAACGATGTGTG TGC
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Coding sequence (CDS) from alignment at chr9:387608..388660+

>NO09G01190.1 ID=NO09G01190.1|Name=NO09G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at chr9:387608..388660+ (Nannochloropsis oceanica)
ATGTCAAAGGCATTGACTAAGCAGCTCTACGAGGGCCTGCAGAAAAAGCT
TGCGGTCACCTTGGCGCCCAAGAAGGGAATCGGGGTCAAAGCACAGGCAA
CCAAGAAAACGACAGGCGGTGCGAGAGGTGGCGGAGGCAAGACGATGAGA
AGGAAACACTTGAAGGCCAGCAAGAAGGCTACGGACGCAAAAACTGGTGT
AGAGGCATCTCCAGAGAGTATCCTGGCTAAAAACGTTCGGTTGCTTAAGA
AGCTGGGTGCGCATCGAACTCAACAGGACGTGTTGGAACAGGTTTTGAGA
AGATAA
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Synonyms
Publications