NO09G00280, NO09G00280 (gene) Nannochloropsis oceanica

Overview
NameNO09G00280
Unique NameNO09G00280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length788
Alignment locationchr9:143322..144109 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:143322..144109 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO:0005654nucleoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR019145Mediator_Med10
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
Homology
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BLAST of NO09G00280 vs. NCBI_GenBank
Match: XP_005854772.1 (hypothetical protein NGA_0368800 [Nannochloropsis gaditana CCMP526] >EKU21588.1 hypothetical protein NGA_0368800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 144.8 bits (364), Expect = 2.200e-31
Identity = 72/108 (66.67%), Postives = 92/108 (85.19%), Query Frame = 0 
Query:   31 LLEAILALNQLDDAMLVYDDKKTTPLVTSSINTFVQALKKAQDGRHALGEEEIPVQLLERMEREGLNPAVYTMESLEKGVDEVEAVAVRDEMLEEIKRGIEEGMKRKE 139
            L EAI ALNQ+DDAM+ YD+K T P VT S++ FVQALKK QDGRH  G+E+IP+ LLER+E+EGLNP VYT+E LEKG++++EAVA+RD++LEEIK G++ GMKRKE
Sbjct:   32 LREAIRALNQVDDAMMAYDNKLTIPSVTRSLDAFVQALKKVQDGRHVFGDEDIPLDLLERIEKEGLNPDVYTIERLEKGLEDLEAVALRDQLLEEIKEGMKAGMKRKE 139
The following BLAST results are available for this feature:
BLAST of NO09G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854772.12.200e-3166.67hypothetical protein NGA_0368800 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010487NSK010487Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00280.1NO09G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670872gene_4528Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00280.1NO09G00280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00280 ID=NO09G00280|Name=NO09G00280|organism=Nannochloropsis oceanica|type=gene|length=788bp
TATGAGGCATTTAATTTATGTGCCAGACCTGCAGACTTTTTCCCCTAACT
CCTCCTCTCGCTCGCCGACATATATATAGCATTCCCCATCCCTTTCACAT
TAAAGTATGTTAAACATAACTCTCTCTTATCTCTACGTTGAGTCGCAGCA
TGCCTTATACTAATTTACACACACCGTCCATCTCGTCTTGACGGCACCAC
TCTCTTACCATGAGAAACGCACGCCCCTTTCCAAGCACAACAGATAATGA
GCCGGCCCCCACCACAACCATCGCCATCACCACCAGACCAAGCTCCTCCT
CGTTCAGCATCCGAACCATCATCCGTCGCGGCCTCCCTCCTTGAAGCGAT
CCTAGCCCTCAATCAACTCGACGACGCCATGCTGGTCTACGACGATAAGA
AAACCACGCCCCTCGTCACTTCGTCTATCAATACTTTCGTCCAAGCCCTA
AAAAAAGCCCAGGATGGACGGCATGCCTTGGGAGAGGAGGAAATACCCGT
GCAGCTGCTCGAGAGGATGGAACGGGAGGGTTTGAACCCGGCGGTATACA
CGATGGAGAGCTTAGAGAAGGGCGTAGATGAGGTGGAGGCCGTGGCGGTG
CGGGATGAGATGCTGGAGGAGATAAAGAGGGGTATAGAGGAGGGGATGAA
GAGGAAGGAAGGAGGGAAAAAGGGCGGGGAAGAAGAGGCAGTTGCAGCTA
TGGATGTGGAGGATCCCTGAAGAGTGAGAAAGCAAGAGCTTAAAGAGCAA
GTGTAAAATGAACAAATTTCACTCGTTTTCCTGCGCCA
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protein sequence of NO09G00280.1

>NO09G00280.1-protein ID=NO09G00280.1-protein|Name=NO09G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MSRPPPQPSPSPPDQAPPRSASEPSSVAASLLEAILALNQLDDAMLVYDD
KKTTPLVTSSINTFVQALKKAQDGRHALGEEEIPVQLLERMEREGLNPAV
YTMESLEKGVDEVEAVAVRDEMLEEIKRGIEEGMKRKEGGKKGGEEEAVA
AMDVEDP*
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Synonyms
Publications