NO09G00280.1, NO09G00280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00280.1
Unique NameNO09G00280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length788
Alignment locationchr9:143322..144109 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:143322..144109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G00280.1 vs.
Match: XP_005854772.1 (hypothetical protein NGA_0368800 [Nannochloropsis gaditana CCMP526]; EKU21588.1 hypothetical protein NGA_0368800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 140.6 bits (353), Expect = 4.200e-30
Identity = 80/137 (58.39%), Postives = 102/137 (74.45%), Query Frame = 0
Query:    2 SRPPPQPSPSPPDQAPPRSASEPSSVAASLLEAILALNQLDDAMLVYDDKKTTPLVTSSINTFVQALKKAQDGRHALGEEEIPVQLLERMEREGLNPAVYTMESLEKGVDEVEAVAVRDEMLEEIKRGIEEGMKRKE 139
            S PP +  P+P D A P            L EAI ALNQ+DDAM+ YD+K T P VT S++ FVQALKK QDGRH  G+E+IP+ LLER+E+EGLNP VYT+E LEKG++++EAVA+RD++LEEIK G++ GMKRKE
Sbjct:   12 SSPPFRKPPAPLDDAHP---------ITGLREAIRALNQVDDAMMAYDNKLTIPSVTRSLDAFVQALKKVQDGRHVFGDEDIPLDLLERIEKEGLNPDVYTIERLEKGLEDLEAVALRDQLLEEIKEGMKAGMKRKE 139          
The following BLAST results are available for this feature:
BLAST of NO09G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854772.14.200e-3058.39hypothetical protein NGA_0368800 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00280NO09G00280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00280.1NO09G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00280.1.cds1NO09G00280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00280.1 ID=NO09G00280.1|Name=NO09G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=788bp
TATGAGGCATTTAATTTATGTGCCAGACCTGCAGACTTTTTCCCCTAACT
CCTCCTCTCGCTCGCCGACATATATATAGCATTCCCCATCCCTTTCACAT
TAAAGTATGTTAAACATAACTCTCTCTTATCTCTACGTTGAGTCGCAGCA
TGCCTTATACTAATTTACACACACCGTCCATCTCGTCTTGACGGCACCAC
TCTCTTACCATGAGAAACGCACGCCCCTTTCCAAGCACAACAGATAATGA
GCCGGCCCCCACCACAACCATCGCCATCACCACCAGACCAAGCTCCTCCT
CGTTCAGCATCCGAACCATCATCCGTCGCGGCCTCCCTCCTTGAAGCGAT
CCTAGCCCTCAATCAACTCGACGACGCCATGCTGGTCTACGACGATAAGA
AAACCACGCCCCTCGTCACTTCGTCTATCAATACTTTCGTCCAAGCCCTA
AAAAAAGCCCAGGATGGACGGCATGCCTTGGGAGAGGAGGAAATACCCGT
GCAGCTGCTCGAGAGGATGGAACGGGAGGGTTTGAACCCGGCGGTATACA
CGATGGAGAGCTTAGAGAAGGGCGTAGATGAGGTGGAGGCCGTGGCGGTG
CGGGATGAGATGCTGGAGGAGATAAAGAGGGGTATAGAGGAGGGGATGAA
GAGGAAGGAAGGAGGGAAAAAGGGCGGGGAAGAAGAGGCAGTTGCAGCTA
TGGATGTGGAGGATCCCTGAAGAGTGAGAAAGCAAGAGCTTAAAGAGCAA
GTGTAAAATGAACAAATTTCACTCGTTTTCCTGCGCCA
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protein sequence of NO09G00280.1

>NO09G00280.1-protein ID=NO09G00280.1-protein|Name=NO09G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MSRPPPQPSPSPPDQAPPRSASEPSSVAASLLEAILALNQLDDAMLVYDD
KKTTPLVTSSINTFVQALKKAQDGRHALGEEEIPVQLLERMEREGLNPAV
YTMESLEKGVDEVEAVAVRDEMLEEIKRGIEEGMKRKEGGKKGGEEEAVA
AMDVEDP*
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mRNA from alignment at chr9:143322..144109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00280.1 ID=NO09G00280.1|Name=NO09G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=788bp|location=Sequence derived from alignment at chr9:143322..144109- (Nannochloropsis oceanica)
TATGAGGCATTTAATTTATGTGCCAGACCTGCAGACTTTTTCCCCTAACT CCTCCTCTCGCTCGCCGACATATATATAGCATTCCCCATCCCTTTCACAT TAAAGTATGTTAAACATAACTCTCTCTTATCTCTACGTTGAGTCGCAGCA TGCCTTATACTAATTTACACACACCGTCCATCTCGTCTTGACGGCACCAC TCTCTTACCATGAGAAACGCACGCCCCTTTCCAAGCACAACAGATAATGA GCCGGCCCCCACCACAACCATCGCCATCACCACCAGACCAAGCTCCTCCT CGTTCAGCATCCGAACCATCATCCGTCGCGGCCTCCCTCCTTGAAGCGAT CCTAGCCCTCAATCAACTCGACGACGCCATGCTGGTCTACGACGATAAGA AAACCACGCCCCTCGTCACTTCGTCTATCAATACTTTCGTCCAAGCCCTA AAAAAAGCCCAGGATGGACGGCATGCCTTGGGAGAGGAGGAAATACCCGT GCAGCTGCTCGAGAGGATGGAACGGGAGGGTTTGAACCCGGCGGTATACA CGATGGAGAGCTTAGAGAAGGGCGTAGATGAGGTGGAGGCCGTGGCGGTG CGGGATGAGATGCTGGAGGAGATAAAGAGGGGTATAGAGGAGGGGATGAA GAGGAAGGAAGGAGGGAAAAAGGGCGGGGAAGAAGAGGCAGTTGCAGCTA TGGATGTGGAGGATCCCTGAAGAGTGAGAAAGCAAGAGCTTAAAGAGCAA GTGTAAAATGAACAAATTTCACTCGTTTTCCTGCGCCA
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Coding sequence (CDS) from alignment at chr9:143322..144109-

>NO09G00280.1 ID=NO09G00280.1|Name=NO09G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at chr9:143322..144109- (Nannochloropsis oceanica)
ATGAGCCGGCCCCCACCACAACCATCGCCATCACCACCAGACCAAGCTCC
TCCTCGTTCAGCATCCGAACCATCATCCGTCGCGGCCTCCCTCCTTGAAG
CGATCCTAGCCCTCAATCAACTCGACGACGCCATGCTGGTCTACGACGAT
AAGAAAACCACGCCCCTCGTCACTTCGTCTATCAATACTTTCGTCCAAGC
CCTAAAAAAAGCCCAGGATGGACGGCATGCCTTGGGAGAGGAGGAAATAC
CCGTGCAGCTGCTCGAGAGGATGGAACGGGAGGGTTTGAACCCGGCGGTA
TACACGATGGAGAGCTTAGAGAAGGGCGTAGATGAGGTGGAGGCCGTGGC
GGTGCGGGATGAGATGCTGGAGGAGATAAAGAGGGGTATAGAGGAGGGGA
TGAAGAGGAAGGAAGGAGGGAAAAAGGGCGGGGAAGAAGAGGCAGTTGCA
GCTATGGATGTGGAGGATCCCTGA
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Synonyms
Publications