NO08G02570, NO08G02570 (gene) Nannochloropsis oceanica

Overview
NameNO08G02570
Unique NameNO08G02570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2448
Alignment locationchr8:728299..730746 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:728299..730746 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025124DUF4050
Homology
[Close]
BLAST of NO08G02570 vs. NCBI_GenBank
Match: EWM26644.1 (hypothetical protein Naga_100001g165 [Nannochloropsis gaditana])

HSP 1 Score: 78.6 bits (192), Expect = 2.100e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0 
Query:   89 SRSVDVDTIIESIFSTTGDARLPQPVPLSQMIDLLVDFWE 129
            +RSVDVD +IESIFSTTGDARLPQPVPLSQMIDLLVDFWE
Sbjct:   68 ARSVDVDHVIESIFSTTGDARLPQPVPLSQMIDLLVDFWE 107
The following BLAST results are available for this feature:
BLAST of NO08G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26644.12.100e-1192.50hypothetical protein Naga_100001g165 [Nannochlorop... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582689gene_3586Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02570.1NO08G02570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G02570.2NO08G02570.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G02570.3NO08G02570.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G02570.4NO08G02570.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G02570.5NO08G02570.5Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02570.1NO08G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G02570.2NO08G02570.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G02570.3NO08G02570.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G02570.4NO08G02570.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G02570.5NO08G02570.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02570 ID=NO08G02570|Name=NO08G02570|organism=Nannochloropsis oceanica|type=gene|length=2448bp
AACATCTGACAACTGGGAGGCATTCTATCAGACGCAAAATCTGACTACAC
TGTCTTGAATTTCTTCTTTACACACCATCCTCGAGGTGCAGGTGCTACTC
TCTTGGGCTCATGCGCTTGGAGGCGAAGATGACTCAAGGTCTCGCTAATA
GGCATGCGCAGAATTTGAGGTGGCCGCCAAGACGATATCGAAGAGGCTTG
AATATCGCCATCCTCGTAGATAGTAGCAGCCCCTACAATTACATCCTCCC
AATCAGGCAGGTTTTGTGGGGGAGGAAGGACGGGGCGCGTTATATTAGTT
GCAGCCTGTAGGGAGGAGGAGGAAGGGGAGGCGTGCGAGGCACGCGCTAC
TGCTTGGGATGCAGGTCCTAACATTTCTGACTGTTGGCTTGTCGATGGTG
GTGGTGACAGACACAAGGCCCGGATCACACCGACCAAGCCTGCTCCCGTC
ACAGGCCGCAACAATATGGCGTTGAAGCCACAGGCAGCTGCCTTTTGGGT
GTCGACGGTGTGTGGCGCGGCCATCAGGACCAAGGGCACACGCAAACCAA
TTTTCATAATGTCTCCCACCAGCTCATCTGCCGTTATGTCACGCAATCCC
GCCGAGAGGAATACCGCATCGTAAGGCACGACCTGAGCGAGGGCCAAGGC
TTCCAAGCCCTCTCGTACCACGTCGAATGCCGCCACCAGTTCCGGGAACA
AGCCGCCGCGCGACTCGTGCTCCAGCGCCCGCCGGATCTCGCTTGCACGC
GCTACATACGTATCGACGAAGAGAACGCGCACGAGACGTGGGGGCTGGAG
AAGGAATGGTTGGGGCGCCACTGCTGTCTCTAGCTCTGACGGCACTCGCA
TTCTTTCTGGGAAGGATGATGATGGTGCTACCAGCGGACACTTTGGTATT
TGCGACAACGGCGGCTTGTCGGGAACGCGGCTCTTGTCCTGCGCCATATC
GCTACCTGTATTTGAAGAGGATGCGATGAGATGTCATTTGTTGTGCGCGA
TCACTAGTAGTAGGCTCATAGCGAAAAACGAGCGAAGGCAGCGCCAGAAT
GGATGCGGGCATGCTTCGAGCGACTAAGAGCGAAGAGGAAGAGCCTGTCA
GCCAGCGGCTGGGTCCCAAGTTAAGCAGTATGCTGGGTGCAGCACCACAT
GCTATGCAGGGACACCGATTGTCTACCTGTGATTGATTAAGTGTATAAAT
AGTTGGAGATTTGGACAGATTGCAGGAGAGGAGAGATACCCCATCATCAC
TCCTCACCGCGGATAGCTGAAGGAAAGACCACTTCCTATTCAACCCCGCA
TCCTATGGCAGTAGGACAGTTGCATCTCACCACTTCAATGACCTCAACGC
CAATTTTAGGCATCGGGGGCGCTATTATTCGGGCAAACAAATACGCCGGG
CCTATCAACCTCCGTTGCGACGCAGTATCAGATGGACAACGAAAAGACCA
ATGGCGGCAGCACAGCCGCGGCATCGCATGAAACAGGCTCGCCTTCCGAA
GCATCTGCTGCCACGGAGGGAGCGACTTCGCATATCCCCAGCAGGAGGGT
GGCTGGGGCGGAATCCTCCTATGTGAATTTTGgtaagccaatggatattt
ctaatgagtgaagcatcaaagacgcagggaaacggcataaggggcgtact
tgtgtaaatagggaaagtaggccggtgtagcagaaactattgttgtctgg
attggagcttatgtgcggcgtctcccaatccccttcgatccgcttgccct
cctccagcagcacagatctcgacgcaaactcaaatctgcctctacaacta
tacagGATTGGAGCTATGGAACAAGAGACGGAAAGTATGGCTAAGAAAGG
GCGAGAAATCAGAAGGGGTCAGTGCTAGCACCAGCCGTCCTGCGGCAATA
ACGCTTCTTCCCAAATGgtgagtgtttgtggtgtactcccgccctgttca
ttcttctttaccatattcatattacttgttgtctggtaggctagcataaa
tgatcgtttctattttgtttgtgatatctcagGTCGCGATCTGTGGATGT
GGACACGATCATTGAGAGCATTTTTTCGACCACGGGGGATGCACGCTTAC
CGCAGCCGGTGCCTCTCTCGCAGATGATTGATTTGCTCGTCGACTTTTGG
GAGgtacgtttggggatacgagagaggagcagcaaagacacgaggattca
ttcatttgtttaccgatctggattttttaatcatctatcacaacttaagG
CGGACGGGCTCTATGACTAGGTGGGGAGGGGGGGAAGGGAGACCGACAAA
AGCGTGGCAGCCGGGGTGCCTGTTTTTACGGGTGATATGTTTTCGCAAGG
AGGACGGGAAGGGATGGGAACGCCAGAGAGAGCATCCGAAAGGATACAGT
TTGTAAAGGACGACAAAATGTAAATAATAAAACCGCCAAGCAGCCAAA
back to top

protein sequence of NO08G02570.1

>NO08G02570.1-protein ID=NO08G02570.1-protein|Name=NO08G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MDNEKTNGGSTAAASHETGSPSEASAATEGATSHIPSRRVAGAESSYVNF
AAQISTQTQICLYNYTGLELWNKRRKVWLRKGEKSEGVSASTSRPAAITL
LPKWSRSVDVDTIIESIFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD
*
back to top

protein sequence of NO08G02570.2

>NO08G02570.2-protein ID=NO08G02570.2-protein|Name=NO08G02570.2|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MDNEKTNGGSTAAASHETGSPSEASAATEGATSHIPSRRVAGAESSYVNF
GLELWNKRRKVWLRKGEKSEGVSASTSRPAAITLLPKWSRSVDVDTIIES
IFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD*
back to top

protein sequence of NO08G02570.3

>NO08G02570.3-protein ID=NO08G02570.3-protein|Name=NO08G02570.3|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MDNEKTNGGSTAAASHETGSPSEASAATEGATSHIPSRRVAGAESSYVNF
AAQISTQTQICLYNYTGLELWNKRRKVWLRKGEKSEGVSASTSRPAAITL
LPKWSRSVDVDTIIESIFSTTGDARLPQPVPLSQMIDLLVDFWEVRLGIR
ERSSKDTRIHSFVYRSGFFNHLSQLKADGLYD*
back to top

protein sequence of NO08G02570.4

>NO08G02570.4-protein ID=NO08G02570.4-protein|Name=NO08G02570.4|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MDNEKTNGGSTAAASHETGSPSEASAATEGATSHIPSRRVAGAESSYVNF
GLELWNKRRKVWLRKGEKSEGVSASTSRPAAITLLPKWSRSVDVDTIIES
IFSTTGDARLPQPVPLSQMIDLLVDFWEVRLGIRERSSKDTRIHSFVYRS
GFFNHLSQLKADGLYD*
back to top

protein sequence of NO08G02570.5

>NO08G02570.5-protein ID=NO08G02570.5-protein|Name=NO08G02570.5|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MDNEKTNGGSTAAASHETGSPSEASAATEGATSHIPSRRVAGAESSYVNF
AAQISTQTQICLYNYTGLELWNKRRKVWLRKGEKSEGVSASTSRPAAITL
LPKW*
back to top
Synonyms
Publications