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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:728299..730746 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G02570.2 vs.
Match: EWM26644.1 (hypothetical protein Naga_100001g165 [Nannochloropsis gaditana]) HSP 1 Score: 92.8 bits (229), Expect = 8.600e-16 Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0
Query: 89 SRSVDVDTIIESIFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD 135
+RSVDVD +IESIFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD
Sbjct: 68 ARSVDVDHVIESIFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD 113
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G02570.2 ID=NO08G02570.2|Name=NO08G02570.2|organism=Nannochloropsis oceanica|type=mRNA|length=2014bp AACATCTGACAACTGGGAGGCATTCTATCAGACGCAAAATCTGACTACAC TGTCTTGAATTTCTTCTTTACACACCATCCTCGAGGTGCAGGTGCTACTC TCTTGGGCTCATGCGCTTGGAGGCGAAGATGACTCAAGGTCTCGCTAATA GGCATGCGCAGAATTTGAGGTGGCCGCCAAGACGATATCGAAGAGGCTTG AATATCGCCATCCTCGTAGATAGTAGCAGCCCCTACAATTACATCCTCCC AATCAGGCAGGTTTTGTGGGGGAGGAAGGACGGGGCGCGTTATATTAGTT GCAGCCTGTAGGGAGGAGGAGGAAGGGGAGGCGTGCGAGGCACGCGCTAC TGCTTGGGATGCAGGTCCTAACATTTCTGACTGTTGGCTTGTCGATGGTG GTGGTGACAGACACAAGGCCCGGATCACACCGACCAAGCCTGCTCCCGTC ACAGGCCGCAACAATATGGCGTTGAAGCCACAGGCAGCTGCCTTTTGGGT GTCGACGGTGTGTGGCGCGGCCATCAGGACCAAGGGCACACGCAAACCAA TTTTCATAATGTCTCCCACCAGCTCATCTGCCGTTATGTCACGCAATCCC GCCGAGAGGAATACCGCATCGTAAGGCACGACCTGAGCGAGGGCCAAGGC TTCCAAGCCCTCTCGTACCACGTCGAATGCCGCCACCAGTTCCGGGAACA AGCCGCCGCGCGACTCGTGCTCCAGCGCCCGCCGGATCTCGCTTGCACGC GCTACATACGTATCGACGAAGAGAACGCGCACGAGACGTGGGGGCTGGAG AAGGAATGGTTGGGGCGCCACTGCTGTCTCTAGCTCTGACGGCACTCGCA TTCTTTCTGGGAAGGATGATGATGGTGCTACCAGCGGACACTTTGGTATT TGCGACAACGGCGGCTTGTCGGGAACGCGGCTCTTGTCCTGCGCCATATC GCTACCTGTATTTGAAGAGGATGCGATGAGATGTCATTTGTTGTGCGCGA TCACTAGTAGTAGGCTCATAGCGAAAAACGAGCGAAGGCAGCGCCAGAAT GGATGCGGGCATGCTTCGAGCGACTAAGAGCGAAGAGGAAGAGCCTGTCA GCCAGCGGCTGGGTCCCAAGTTAAGCAGTATGCTGGGTGCAGCACCACAT GCTATGCAGGGACACCGATTGTCTACCTGTGATTGATTAAGTGTATAAAT AGTTGGAGATTTGGACAGATTGCAGGAGAGGAGAGATACCCCATCATCAC TCCTCACCGCGGATAGCTGAAGGAAAGACCACTTCCTATTCAACCCCGCA TCCTATGGCAGTAGGACAGTTGCATCTCACCACTTCAATGACCTCAACGC CAATTTTAGGCATCGGGGGCGCTATTATTCGGGCAAACAAATACGCCGGG CCTATCAACCTCCGTTGCGACGCAGTATCAGATGGACAACGAAAAGACCA ATGGCGGCAGCACAGCCGCGGCATCGCATGAAACAGGCTCGCCTTCCGAA GCATCTGCTGCCACGGAGGGAGCGACTTCGCATATCCCCAGCAGGAGGGT GGCTGGGGCGGAATCCTCCTATGTGAATTTTGGATTGGAGCTATGGAACA AGAGACGGAAAGTATGGCTAAGAAAGGGCGAGAAATCAGAAGGGGTCAGT GCTAGCACCAGCCGTCCTGCGGCAATAACGCTTCTTCCCAAATGGTCGCG ATCTGTGGATGTGGACACGATCATTGAGAGCATTTTTTCGACCACGGGGG ATGCACGCTTACCGCAGCCGGTGCCTCTCTCGCAGATGATTGATTTGCTC GTCGACTTTTGGGAGGCGGACGGGCTCTATGACTAGGTGGGGAGGGGGGG AAGGGAGACCGACAAAAGCGTGGCAGCCGGGGTGCCTGTTTTTACGGGTG ATATGTTTTCGCAAGGAGGACGGGAAGGGATGGGAACGCCAGAGAGAGCA TCCGAAAGGATACAGTTTGTAAAGGACGACAAAATGTAAATAATAAAACC GCCAAGCAGCCAAA back to topprotein sequence of NO08G02570.2 >NO08G02570.2-protein ID=NO08G02570.2-protein|Name=NO08G02570.2|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp MDNEKTNGGSTAAASHETGSPSEASAATEGATSHIPSRRVAGAESSYVNF GLELWNKRRKVWLRKGEKSEGVSASTSRPAAITLLPKWSRSVDVDTIIES IFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD* back to topmRNA from alignment at chr8:728299..730746+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G02570.2 ID=NO08G02570.2|Name=NO08G02570.2|organism=Nannochloropsis oceanica|type=mRNA|length=2448bp|location=Sequence derived from alignment at chr8:728299..730746+ (Nannochloropsis oceanica) AACATCTGACAACTGGGAGGCATTCTATCAGACGCAAAATCTGACTACAC
TGTCTTGAATTTCTTCTTTACACACCATCCTCGAGGTGCAGGTGCTACTC
TCTTGGGCTCATGCGCTTGGAGGCGAAGATGACTCAAGGTCTCGCTAATA
GGCATGCGCAGAATTTGAGGTGGCCGCCAAGACGATATCGAAGAGGCTTG
AATATCGCCATCCTCGTAGATAGTAGCAGCCCCTACAATTACATCCTCCC
AATCAGGCAGGTTTTGTGGGGGAGGAAGGACGGGGCGCGTTATATTAGTT
GCAGCCTGTAGGGAGGAGGAGGAAGGGGAGGCGTGCGAGGCACGCGCTAC
TGCTTGGGATGCAGGTCCTAACATTTCTGACTGTTGGCTTGTCGATGGTG
GTGGTGACAGACACAAGGCCCGGATCACACCGACCAAGCCTGCTCCCGTC
ACAGGCCGCAACAATATGGCGTTGAAGCCACAGGCAGCTGCCTTTTGGGT
GTCGACGGTGTGTGGCGCGGCCATCAGGACCAAGGGCACACGCAAACCAA
TTTTCATAATGTCTCCCACCAGCTCATCTGCCGTTATGTCACGCAATCCC
GCCGAGAGGAATACCGCATCGTAAGGCACGACCTGAGCGAGGGCCAAGGC
TTCCAAGCCCTCTCGTACCACGTCGAATGCCGCCACCAGTTCCGGGAACA
AGCCGCCGCGCGACTCGTGCTCCAGCGCCCGCCGGATCTCGCTTGCACGC
GCTACATACGTATCGACGAAGAGAACGCGCACGAGACGTGGGGGCTGGAG
AAGGAATGGTTGGGGCGCCACTGCTGTCTCTAGCTCTGACGGCACTCGCA
TTCTTTCTGGGAAGGATGATGATGGTGCTACCAGCGGACACTTTGGTATT
TGCGACAACGGCGGCTTGTCGGGAACGCGGCTCTTGTCCTGCGCCATATC
GCTACCTGTATTTGAAGAGGATGCGATGAGATGTCATTTGTTGTGCGCGA
TCACTAGTAGTAGGCTCATAGCGAAAAACGAGCGAAGGCAGCGCCAGAAT
GGATGCGGGCATGCTTCGAGCGACTAAGAGCGAAGAGGAAGAGCCTGTCA
GCCAGCGGCTGGGTCCCAAGTTAAGCAGTATGCTGGGTGCAGCACCACAT
GCTATGCAGGGACACCGATTGTCTACCTGTGATTGATTAAGTGTATAAAT
AGTTGGAGATTTGGACAGATTGCAGGAGAGGAGAGATACCCCATCATCAC
TCCTCACCGCGGATAGCTGAAGGAAAGACCACTTCCTATTCAACCCCGCA
TCCTATGGCAGTAGGACAGTTGCATCTCACCACTTCAATGACCTCAACGC
CAATTTTAGGCATCGGGGGCGCTATTATTCGGGCAAACAAATACGCCGGG
CCTATCAACCTCCGTTGCGACGCAGTATCAGATGGACAACGAAAAGACCA
ATGGCGGCAGCACAGCCGCGGCATCGCATGAAACAGGCTCGCCTTCCGAA
GCATCTGCTGCCACGGAGGGAGCGACTTCGCATATCCCCAGCAGGAGGGT
GGCTGGGGCGGAATCCTCCTATGTGAATTTTGGTAAGCCAATGGATATTT
CTAATGAGTGAAGCATCAAAGACGCAGGGAAACGGCATAAGGGGCGTACT
TGTGTAAATAGGGAAAGTAGGCCGGTGTAGCAGAAACTATTGTTGTCTGG
ATTGGAGCTTATGTGCGGCGTCTCCCAATCCCCTTCGATCCGCTTGCCCT
CCTCCAGCAGCACAGATCTCGACGCAAACTCAAATCTGCCTCTACAACTA
TACAGGATTGGAGCTATGGAACAAGAGACGGAAAGTATGGCTAAGAAAGG
GCGAGAAATCAGAAGGGGTCAGTGCTAGCACCAGCCGTCCTGCGGCAATA
ACGCTTCTTCCCAAATGGTGAGTGTTTGTGGTGTACTCCCGCCCTGTTCA
TTCTTCTTTACCATATTCATATTACTTGTTGTCTGGTAGGCTAGCATAAA
TGATCGTTTCTATTTTGTTTGTGATATCTCAGGTCGCGATCTGTGGATGT
GGACACGATCATTGAGAGCATTTTTTCGACCACGGGGGATGCACGCTTAC
CGCAGCCGGTGCCTCTCTCGCAGATGATTGATTTGCTCGTCGACTTTTGG
GAGGTACGTTTGGGGATACGAGAGAGGAGCAGCAAAGACACGAGGATTCA
TTCATTTGTTTACCGATCTGGATTTTTTAATCATCTATCACAACTTAAGG
CGGACGGGCTCTATGACTAGGTGGGGAGGGGGGGAAGGGAGACCGACAAA
AGCGTGGCAGCCGGGGTGCCTGTTTTTACGGGTGATATGTTTTCGCAAGG
AGGACGGGAAGGGATGGGAACGCCAGAGAGAGCATCCGAAAGGATACAGT
TTGTAAAGGACGACAAAATGTAAATAATAAAACCGCCAAGCAGCCAAA back to topCoding sequence (CDS) from alignment at chr8:728299..730746+ >NO08G02570.2 ID=NO08G02570.2|Name=NO08G02570.2|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at chr8:728299..730746+ (Nannochloropsis oceanica) ATGGACAACGAAAAGACCAATGGCGGCAGCACAGCCGCGGCATCGCATGA AACAGGCTCGCCTTCCGAAGCATCTGCTGCCACGGAGGGAGCGACTTCGC ATATCCCCAGCAGGAGGGTGGCTGGGGCGGAATCCTCCTATGTGAATTTT GGATTGGAGCTATGGAACAAGAGACGGAAAGTATGGCTAAGAAAGGGCGA GAAATCAGAAGGGGTCAGTGCTAGCACCAGCCGTCCTGCGGCAATAACGC TTCTTCCCAAATGGTCGCGATCTGTGGATGTGGACACGATCATTGAGAGC ATTTTTTCGACCACGGGGGATGCACGCTTACCGCAGCCGGTGCCTCTCTC GCAGATGATTGATTTGCTCGTCGACTTTTGGGAGGCGGACGGGCTCTATG ACTAG back to top
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