NO08G02570.5, NO08G02570.5 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02570.5
Unique NameNO08G02570.5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2273
Alignment locationchr8:728299..730746 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:728299..730746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO08G02570.5 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02570NO08G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02570.5NO08G02570.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02570.5.cds1NO08G02570.5.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02570.5.cds2NO08G02570.5.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02570.5 ID=NO08G02570.5|Name=NO08G02570.5|organism=Nannochloropsis oceanica|type=mRNA|length=2273bp
AACATCTGACAACTGGGAGGCATTCTATCAGACGCAAAATCTGACTACAC
TGTCTTGAATTTCTTCTTTACACACCATCCTCGAGGTGCAGGTGCTACTC
TCTTGGGCTCATGCGCTTGGAGGCGAAGATGACTCAAGGTCTCGCTAATA
GGCATGCGCAGAATTTGAGGTGGCCGCCAAGACGATATCGAAGAGGCTTG
AATATCGCCATCCTCGTAGATAGTAGCAGCCCCTACAATTACATCCTCCC
AATCAGGCAGGTTTTGTGGGGGAGGAAGGACGGGGCGCGTTATATTAGTT
GCAGCCTGTAGGGAGGAGGAGGAAGGGGAGGCGTGCGAGGCACGCGCTAC
TGCTTGGGATGCAGGTCCTAACATTTCTGACTGTTGGCTTGTCGATGGTG
GTGGTGACAGACACAAGGCCCGGATCACACCGACCAAGCCTGCTCCCGTC
ACAGGCCGCAACAATATGGCGTTGAAGCCACAGGCAGCTGCCTTTTGGGT
GTCGACGGTGTGTGGCGCGGCCATCAGGACCAAGGGCACACGCAAACCAA
TTTTCATAATGTCTCCCACCAGCTCATCTGCCGTTATGTCACGCAATCCC
GCCGAGAGGAATACCGCATCGTAAGGCACGACCTGAGCGAGGGCCAAGGC
TTCCAAGCCCTCTCGTACCACGTCGAATGCCGCCACCAGTTCCGGGAACA
AGCCGCCGCGCGACTCGTGCTCCAGCGCCCGCCGGATCTCGCTTGCACGC
GCTACATACGTATCGACGAAGAGAACGCGCACGAGACGTGGGGGCTGGAG
AAGGAATGGTTGGGGCGCCACTGCTGTCTCTAGCTCTGACGGCACTCGCA
TTCTTTCTGGGAAGGATGATGATGGTGCTACCAGCGGACACTTTGGTATT
TGCGACAACGGCGGCTTGTCGGGAACGCGGCTCTTGTCCTGCGCCATATC
GCTACCTGTATTTGAAGAGGATGCGATGAGATGTCATTTGTTGTGCGCGA
TCACTAGTAGTAGGCTCATAGCGAAAAACGAGCGAAGGCAGCGCCAGAAT
GGATGCGGGCATGCTTCGAGCGACTAAGAGCGAAGAGGAAGAGCCTGTCA
GCCAGCGGCTGGGTCCCAAGTTAAGCAGTATGCTGGGTGCAGCACCACAT
GCTATGCAGGGACACCGATTGTCTACCTGTGATTGATTAAGTGTATAAAT
AGTTGGAGATTTGGACAGATTGCAGGAGAGGAGAGATACCCCATCATCAC
TCCTCACCGCGGATAGCTGAAGGAAAGACCACTTCCTATTCAACCCCGCA
TCCTATGGCAGTAGGACAGTTGCATCTCACCACTTCAATGACCTCAACGC
CAATTTTAGGCATCGGGGGCGCTATTATTCGGGCAAACAAATACGCCGGG
CCTATCAACCTCCGTTGCGACGCAGTATCAGATGGACAACGAAAAGACCA
ATGGCGGCAGCACAGCCGCGGCATCGCATGAAACAGGCTCGCCTTCCGAA
GCATCTGCTGCCACGGAGGGAGCGACTTCGCATATCCCCAGCAGGAGGGT
GGCTGGGGCGGAATCCTCCTATGTGAATTTTGCAGCACAGATCTCGACGC
AAACTCAAATCTGCCTCTACAACTATACAGGATTGGAGCTATGGAACAAG
AGACGGAAAGTATGGCTAAGAAAGGGCGAGAAATCAGAAGGGGTCAGTGC
TAGCACCAGCCGTCCTGCGGCAATAACGCTTCTTCCCAAATGGTGAGTGT
TTGTGGTGTACTCCCGCCCTGTTCATTCTTCTTTACCATATTCATATTAC
TTGTTGTCTGGTAGGCTAGCATAAATGATCGTTTCTATTTTGTTTGTGAT
ATCTCAGGTCGCGATCTGTGGATGTGGACACGATCATTGAGAGCATTTTT
TCGACCACGGGGGATGCACGCTTACCGCAGCCGGTGCCTCTCTCGCAGAT
GATTGATTTGCTCGTCGACTTTTGGGAGGTACGTTTGGGGATACGAGAGA
GGAGCAGCAAAGACACGAGGATTCATTCATTTGTTTACCGATCTGGATTT
TTTAATCATCTATCACAACTTAAGGCGGACGGGCTCTATGACTAGGTGGG
GAGGGGGGGAAGGGAGACCGACAAAAGCGTGGCAGCCGGGGTGCCTGTTT
TTACGGGTGATATGTTTTCGCAAGGAGGACGGGAAGGGATGGGAACGCCA
GAGAGAGCATCCGAAAGGATACAGTTTGTAAAGGACGACAAAATGTAAAT
AATAAAACCGCCAAGCAGCCAAA
back to top

protein sequence of NO08G02570.5

>NO08G02570.5-protein ID=NO08G02570.5-protein|Name=NO08G02570.5|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MDNEKTNGGSTAAASHETGSPSEASAATEGATSHIPSRRVAGAESSYVNF
AAQISTQTQICLYNYTGLELWNKRRKVWLRKGEKSEGVSASTSRPAAITL
LPKW*
back to top

mRNA from alignment at chr8:728299..730746+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02570.5 ID=NO08G02570.5|Name=NO08G02570.5|organism=Nannochloropsis oceanica|type=mRNA|length=2448bp|location=Sequence derived from alignment at chr8:728299..730746+ (Nannochloropsis oceanica)
AACATCTGACAACTGGGAGGCATTCTATCAGACGCAAAATCTGACTACAC TGTCTTGAATTTCTTCTTTACACACCATCCTCGAGGTGCAGGTGCTACTC TCTTGGGCTCATGCGCTTGGAGGCGAAGATGACTCAAGGTCTCGCTAATA GGCATGCGCAGAATTTGAGGTGGCCGCCAAGACGATATCGAAGAGGCTTG AATATCGCCATCCTCGTAGATAGTAGCAGCCCCTACAATTACATCCTCCC AATCAGGCAGGTTTTGTGGGGGAGGAAGGACGGGGCGCGTTATATTAGTT GCAGCCTGTAGGGAGGAGGAGGAAGGGGAGGCGTGCGAGGCACGCGCTAC TGCTTGGGATGCAGGTCCTAACATTTCTGACTGTTGGCTTGTCGATGGTG GTGGTGACAGACACAAGGCCCGGATCACACCGACCAAGCCTGCTCCCGTC ACAGGCCGCAACAATATGGCGTTGAAGCCACAGGCAGCTGCCTTTTGGGT GTCGACGGTGTGTGGCGCGGCCATCAGGACCAAGGGCACACGCAAACCAA TTTTCATAATGTCTCCCACCAGCTCATCTGCCGTTATGTCACGCAATCCC GCCGAGAGGAATACCGCATCGTAAGGCACGACCTGAGCGAGGGCCAAGGC TTCCAAGCCCTCTCGTACCACGTCGAATGCCGCCACCAGTTCCGGGAACA AGCCGCCGCGCGACTCGTGCTCCAGCGCCCGCCGGATCTCGCTTGCACGC GCTACATACGTATCGACGAAGAGAACGCGCACGAGACGTGGGGGCTGGAG AAGGAATGGTTGGGGCGCCACTGCTGTCTCTAGCTCTGACGGCACTCGCA TTCTTTCTGGGAAGGATGATGATGGTGCTACCAGCGGACACTTTGGTATT TGCGACAACGGCGGCTTGTCGGGAACGCGGCTCTTGTCCTGCGCCATATC GCTACCTGTATTTGAAGAGGATGCGATGAGATGTCATTTGTTGTGCGCGA TCACTAGTAGTAGGCTCATAGCGAAAAACGAGCGAAGGCAGCGCCAGAAT GGATGCGGGCATGCTTCGAGCGACTAAGAGCGAAGAGGAAGAGCCTGTCA GCCAGCGGCTGGGTCCCAAGTTAAGCAGTATGCTGGGTGCAGCACCACAT GCTATGCAGGGACACCGATTGTCTACCTGTGATTGATTAAGTGTATAAAT AGTTGGAGATTTGGACAGATTGCAGGAGAGGAGAGATACCCCATCATCAC TCCTCACCGCGGATAGCTGAAGGAAAGACCACTTCCTATTCAACCCCGCA TCCTATGGCAGTAGGACAGTTGCATCTCACCACTTCAATGACCTCAACGC CAATTTTAGGCATCGGGGGCGCTATTATTCGGGCAAACAAATACGCCGGG CCTATCAACCTCCGTTGCGACGCAGTATCAGATGGACAACGAAAAGACCA ATGGCGGCAGCACAGCCGCGGCATCGCATGAAACAGGCTCGCCTTCCGAA GCATCTGCTGCCACGGAGGGAGCGACTTCGCATATCCCCAGCAGGAGGGT GGCTGGGGCGGAATCCTCCTATGTGAATTTTGGTAAGCCAATGGATATTT CTAATGAGTGAAGCATCAAAGACGCAGGGAAACGGCATAAGGGGCGTACT TGTGTAAATAGGGAAAGTAGGCCGGTGTAGCAGAAACTATTGTTGTCTGG ATTGGAGCTTATGTGCGGCGTCTCCCAATCCCCTTCGATCCGCTTGCCCT CCTCCAGCAGCACAGATCTCGACGCAAACTCAAATCTGCCTCTACAACTA TACAGGATTGGAGCTATGGAACAAGAGACGGAAAGTATGGCTAAGAAAGG GCGAGAAATCAGAAGGGGTCAGTGCTAGCACCAGCCGTCCTGCGGCAATA ACGCTTCTTCCCAAATGGTGAGTGTTTGTGGTGTACTCCCGCCCTGTTCA TTCTTCTTTACCATATTCATATTACTTGTTGTCTGGTAGGCTAGCATAAA TGATCGTTTCTATTTTGTTTGTGATATCTCAGGTCGCGATCTGTGGATGT GGACACGATCATTGAGAGCATTTTTTCGACCACGGGGGATGCACGCTTAC CGCAGCCGGTGCCTCTCTCGCAGATGATTGATTTGCTCGTCGACTTTTGG GAGGTACGTTTGGGGATACGAGAGAGGAGCAGCAAAGACACGAGGATTCA TTCATTTGTTTACCGATCTGGATTTTTTAATCATCTATCACAACTTAAGG CGGACGGGCTCTATGACTAGGTGGGGAGGGGGGGAAGGGAGACCGACAAA AGCGTGGCAGCCGGGGTGCCTGTTTTTACGGGTGATATGTTTTCGCAAGG AGGACGGGAAGGGATGGGAACGCCAGAGAGAGCATCCGAAAGGATACAGT TTGTAAAGGACGACAAAATGTAAATAATAAAACCGCCAAGCAGCCAAA
back to top

Coding sequence (CDS) from alignment at chr8:728299..730746+

>NO08G02570.5 ID=NO08G02570.5|Name=NO08G02570.5|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at chr8:728299..730746+ (Nannochloropsis oceanica)
ATGGACAACGAAAAGACCAATGGCGGCAGCACAGCCGCGGCATCGCATGA
AACAGGCTCGCCTTCCGAAGCATCTGCTGCCACGGAGGGAGCGACTTCGC
ATATCCCCAGCAGGAGGGTGGCTGGGGCGGAATCCTCCTATGTGAATTTT
GCAGCACAGATCTCGACGCAAACTCAAATCTGCCTCTACAACTATACAGG
ATTGGAGCTATGGAACAAGAGACGGAAAGTATGGCTAAGAAAGGGCGAGA
AATCAGAAGGGGTCAGTGCTAGCACCAGCCGTCCTGCGGCAATAACGCTT
CTTCCCAAATGGTGA
back to top
Synonyms
Publications