NO08G01760, NO08G01760 (gene) Nannochloropsis oceanica

Overview
NameNO08G01760
Unique NameNO08G01760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3123
Alignment locationchr8:543067..546189 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:543067..546189 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G01760 vs. NCBI_GenBank
Match: EWM26583.1 (hypothetical protein Naga_100001g87 [Nannochloropsis gaditana])

HSP 1 Score: 84.3 bits (207), Expect = 1.300e-12
Identity = 81/268 (30.22%), Postives = 122/268 (45.52%), Query Frame = 0 
Query:  192 EKWKRLVP-LPGGDAGTAFVAVLTEPCFLQAQIRAKTEDGHGLNETLEALRTVQVQQKTKNKSKRKGM-ENQGG-----IIKDERVEEEETADKQADSGSSGSGSDA--VVDLRGRIGGGGGVSASFSLLNILTGGITRPPRCTGLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQEVLRSIPVGRNICPMPGLLAASEAHVAIGDPWSSTILIHRLSDDFPAVTSTKEKQLKMPAGLVPRGLRFFGDHTLVCLAVEAAGAKG 451
            EK K + P L  GD  T + A+LTEPC LQ Q+ +      G+NETL  LR +Q Q + +   +R+G+ E+ GG      ++    E+ +      D GS G G+++  V+DL G++G G     + S  ++L   I     C+ L                                 E  +      GR     P LLAAS  H+A+ DPW S + ++ L D F  V +T+++ L++P G +PRGL       L CLA +    KG
Sbjct:   17 EKRKVMSPVLVSGD--TVYFAILTEPC-LQTQVCSADSKHRGVNETLARLRGLQGQIRQRENMEREGVREDDGGKTNAMSLQGGGKEKVKAPVVTEDGGSVGIGNNSIEVIDLCGKLGLGSESDPAASPSSLLDSLI---QNCSRL--KVPSLDTSVPSPDQQAKLVVSRFMAGGAARREVVLTTFAQDGR-----PSLLAASRTHLALADPWRSILHVYFLPDSFARVATTEKRMLELPVGFLPRGLVLAASGGLYCLATQIKRGKG 271
The following BLAST results are available for this feature:
BLAST of NO08G01760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26583.11.300e-1230.22hypothetical protein Naga_100001g87 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL106nonsL106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR139ngnoR139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008854NSK008854Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01760.1NO08G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G01760.2NO08G01760.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582399gene_3504Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g87gene3876Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01760.1NO08G01760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G01760.2NO08G01760.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01760 ID=NO08G01760|Name=NO08G01760|organism=Nannochloropsis oceanica|type=gene|length=3123bp
TGACTCCCTCCCTCCCCGATGGCTGCTCGCAGGCGACAAGGAAGATAGCG
GCCGATTACAACCAAAACTGCTGCTGCTGCTGCTGCTGCTACTGTTTCTC
CTGCTTCTATACTCCTCCTCCTCTTCTTCCCAACCATCGTCCCACCGTCT
ACCCCCACCCTCACCGCCGCTGCTCTCGATCCTCTCGTTTCTCTCCGCTT
TCCATCCGCTGACCCCACCACCACGCTGGTGCCCAAACGAGAAGGAGGAA
GAGGACGAGTTGGAAGATTCCGGACGAACATTTTGCCCGCGACTCCAGTC
TGATGCTAACGAAGGCTCCCCGCGATGGCGACGGTCCTCGGCATTCTCTC
GACCAAACCTCCCTCCACCCCTTTCCCCACGTGGACGGTTACCACCACCA
CGGCCACCTTGCTCACCACAATCCCACTCATCCAGGCTACCTTCTCCACC
TCGATAACCATAGCCTCCTCCTCTGCTCCTTCCACCTCCTCCTCCTTCTC
CTCCTCCTCCTCCTCCTCTCCCCCTGCCATCGTTGGAGTCGTTGCCGTCC
CTATTGTAGCTGCTGCGTCCGCCTCTAGAAATGTTACCGCCACCACCTCC
ACCTCCTCTTTTTGTTTTTGATCCTTCCTCCCTCCCTCCCCATCCACCAT
CACCACCATGGTAGGAGGAGTTGTTGTCTGCCGTTTTGCTTCGAAAACCT
CCTCTCCTTTCGCTTCCCACAACCTTCTCACGTGTCCCGGAATTCATTGC
CACTGACTTCTCTGGCCCACTGTGTCTGTATGTCATGTGTGTGAGAGACT
ACCTCACGCATAATTTGATGACAGATTCGTACGTAGACCTCATGGTAGCT
TCAAATTATTGTACTGAGAACTCTGTGCGTGGGTCTTCACGTGCGAGGTT
GCCTCAGCGATTAGTCTTCACGCACGACCCAACGATCAACGACGCTCAAC
TCAACAACTCAACAATTCAACAACAGATGCAGCATGCGAGTGGTATATCT
CGGACTTTGCGATGATCTGTCGCCAAGCCGCAACTGGTTGGATGgtgagt
gctcccgctactgccacagacaaccacccttaccccgtgcttaagttacc
ttacaagccccttttcgtaccctaaccctagcttgacgtcatccaacctt
gcttgatgtattgacgatacattacagGTGCTGTTTCTTTAAGTAGTGGG
TATCTTGTGCTTTTACCGACGGATGGGAAAGTTGCCGTTGTGCGGGTACC
ATTGGCGCAAGACCTGAGGGACGACTCACCTCGAGTCATGCTTCTAAACT
CTCTCGAAACTATAGAAGAGGGGGGAACTTTTGATCATGGAGCTGTTTGT
CCGAGCGGAAGCCGGATCGCGCTCGCCTACACGTGCAGCTCCCTGCACAT
CCACAACATTTTAAGCAGTGCGGGGGACAGTGAGAAAATCCAGCATATCT
CCCGATCGATAAGgtgtgtgcctaccagaacgagctcgtctatttctgtt
gcattattccaaattttctacataacacgcacacaccacagAAAAAGCCC
CGATCCGATACGCAGATCAAAGAGGCTTCGACACGTGGCTTGGCAGGTGC
TTCCTTGTGGTTACGTCGTCGGCGCGGCGAATGCCAAGCATTTGACCATA
TACGATGCTTGGGAGTCGATAGATTCAAATCTTCGTGTTCTTGGTGGGAT
CAAGTCTTCAGAGCCCATTGATGGGTGGACATGGCTGAGTAACCGGGACA
GAATCGCTCTCTTGGCGGGAAACAAAGTGAGCATTCACGATCGAGTTTTG
TCCAAGGATTATGAGCAAAATCCATCATTCTTGCCTTCTCCGTCGCTGGG
AGCGGCTGTGGAGAAGTGGAAGCGGCTGGTGCCTTTGCCCGGGGGGGACG
CTGGAACAGCCTTTGTCGCTGTCCTGACTGAGCCATGCTTCTTGCAGGCT
CAAATACGCGCGAAGACCGAGGATGGTCACGGGTTGAACGAGACACTGGA
GGCACTCCGAACCGTGCAGGTCCAGCAGAAGACGAAGAATAAATCAAAGA
GAAAAGGAATGGAGAATCAGGGGGGCATTATTAAGGATGAGAGGGTCGAG
GAAGAAGAGACAGCGGACAAGCAGGCAGATAGCGGTAGCAGCGGCAGCGG
CAGTGACGCTGTTGTTGATCTGCGCGGTAGGATTGGTGGAGGTGGAGGTG
TCTCCGCTTCCTTTTCGTTGTTGAATATCCTCACGGGAGGCATCACACGT
CCTCCACGATGCACTGGACTATTCTTACCACCGCCACCCCCCGCGCAACA
GAGCAATGATGATGGAGCCCAGCTCCTGCTTCTAAAAGTACCGGTAGCGT
CATCCTCAGGGCCATCAGACGAGCAAGAGGTGCTGCGTTCCATTCCGGTG
GGGAGAAATATCTGCCCCATGCCAGGACTCCTTGCCGCCTCGGAGGCCCA
CGTCGCGATAGGTGACCCATGGTCGTCCACCATACTAATTCACCGCCTGT
CCGATGACTTTCCTGCTGTGACATCGACGAAAGAGAAGCAATTAAAGATG
CCAGCTGGGTTGGTCCCCCGTGGTTTACGCTTTTTCGGTGATCATACCCT
CGTTTGTCTTGCTGTTGAGGCGGCAGGAGCTAAGGGCGGAGGCAGCGGAA
GAGGAAGAAAAGAAGGAGGAGGAGGAAAAGGAGGAAAAGGAGGAGACGGA
GGAGAAGGAGGAAAAAGAGGAGGAGGACGAGGAACATTGCAAGGGTGTAC
TAGTGCGAGCTTGATTGAGTTCCTCTTGGAGGATGAAGAGCCGCCAGAGG
AATCAAAAGGGCTCTCGACCATCGTGTTGAACGTTGTTGGTCTTTCAGCA
GGTGTGAGCCAACAACAACAAGAAGAGCAGCAGCAGCAGCAGCAGCAGCA
CGATGTTATGCCCTTTCTCCGCAGCTTTCGGGATGAGATGAGAGAGCGAT
TTGACGAGCTGGAAAGCAAAATGACGACGCTGGAACGAAGGCTCGGCGAA
TTGTGAGTGAAGAAAGTGTTATCTTTCTGGACCACCAAGGTGTTGATTTC
GGTGTGAGTGAATCAACAATGTGCATGAACATGAACATAATGAAATAGAT
TAATGGGCGTTTGCGCGCGGTAA
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protein sequence of NO08G01760.1

>NO08G01760.1-protein ID=NO08G01760.1-protein|Name=NO08G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MRVVYLGLCDDLSPSRNWLDGAVSLSSGYLVLLPTDGKVAVVRVPLAQDL
RDDSPRVMLLNSLETIEEGGTFDHGAVCPSGSRIALAYTCSSLHIHNILS
SAGDSEKIQHISRSIRKSPDPIRRSKRLRHVAWQVLPCGYVVGAANAKHL
TIYDAWESIDSNLRVLGGIKSSEPIDGWTWLSNRDRIALLAGNKVSIHDR
VLSKDYEQNPSFLPSPSLGAAVEKWKRLVPLPGGDAGTAFVAVLTEPCFL
QAQIRAKTEDGHGLNETLEALRTVQVQQKTKNKSKRKGMENQGGIIKDER
VEEEETADKQADSGSSGSGSDAVVDLRGRIGGGGGVSASFSLLNILTGGI
TRPPRCTGLFLPPPPPAQQSNDDGAQLLLLKVPVASSSGPSDEQEVLRSI
PVGRNICPMPGLLAASEAHVAIGDPWSSTILIHRLSDDFPAVTSTKEKQL
KMPAGLVPRGLRFFGDHTLVCLAVEAAGAKGGGSGRGRKEGGGGKGGKGG
DGGEGGKRGGGRGTLQGCTSASLIEFLLEDEEPPEESKGLSTIVLNVVGL
SAGVSQQQQEEQQQQQQQHDVMPFLRSFRDEMRERFDELESKMTTLERRL
GEL*
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protein sequence of NO08G01760.2

>NO08G01760.2-protein ID=NO08G01760.2-protein|Name=NO08G01760.2|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MLLNSLETIEEGGTFDHGAVCPSGSRIALAYTCSSLHIHNILSSAGDSEK
IQHISRSIRCVPTRTSSSISVALFQIFYITRTHHRKSPDPIRRSKRLRHV
AWQVLPCGYVVGAANAKHLTIYDAWESIDSNLRVLGGIKSSEPIDGWTWL
SNRDRIALLAGNKVSIHDRVLSKDYEQNPSFLPSPSLGAAVEKWKRLVPL
PGGDAGTAFVAVLTEPCFLQAQIRAKTEDGHGLNETLEALRTVQVQQKTK
NKSKRKGMENQGGIIKDERVEEEETADKQADSGSSGSGSDAVVDLRGRIG
GGGGVSASFSLLNILTGGITRPPRCTGLFLPPPPPAQQSNDDGAQLLLLK
VPVASSSGPSDEQEVLRSIPVGRNICPMPGLLAASEAHVAIGDPWSSTIL
IHRLSDDFPAVTSTKEKQLKMPAGLVPRGLRFFGDHTLVCLAVEAAGAKG
GGSGRGRKEGGGGKGGKGGDGGEGGKRGGGRGTLQGCTSASLIEFLLEDE
EPPEESKGLSTIVLNVVGLSAGVSQQQQEEQQQQQQQHDVMPFLRSFRDE
MRERFDELESKMTTLERRLGEL*
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Synonyms
Publications