NO08G01760.2, NO08G01760.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01760.2
Unique NameNO08G01760.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3036
Alignment locationchr8:543067..546189 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:543067..546189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G01760.2 vs.
Match: EWM26583.1 (hypothetical protein Naga_100001g87 [Nannochloropsis gaditana])

HSP 1 Score: 98.6 bits (244), Expect = 6.700e-17
Identity = 89/273 (32.60%), Postives = 139/273 (50.92%), Query Frame = 0
Query:  192 EKWKRLVP-LPGGDAGTAFVAVLTEPCFLQAQIRAKTEDGHGLNETLEALRTVQVQQKTKNKSKRKGM-ENQGG-----IIKDERVEEEETADKQADSGSSGSGSDA--VVDLRGRIGGGGGVSASFSLLNILTGGITRPPRCTGLFLPPPPPAQQSNDDGAQLLLLKVPVASSSGPSDEQEVLRSIPV-GRNICPMPGLLAASEAHVAIGDPWSSTILIHRLSDDFPAVTSTKEKQLKMPAGLVPRGLRFFGDHTLVCLAVEAAGAKGGGSG 455
            EK K + P L  GD  T + A+LTEPC LQ Q+ +      G+NETL  LR +Q Q + +   +R+G+ E+ GG      ++    E+ +      D GS G G+++  V+DL G++G G     + S  ++L   I     C+ L +P    +  S D  A+L++ +     + G +  + VL +    GR     P LLAAS  H+A+ DPW S + ++ L D F  V +T+++ L++P G +PRGL       L CLA +    KG   G
Sbjct:   17 EKRKVMSPVLVSGD--TVYFAILTEPC-LQTQVCSADSKHRGVNETLARLRGLQGQIRQRENMEREGVREDDGGKTNAMSLQGGGKEKVKAPVVTEDGGSVGIGNNSIEVIDLCGKLGLGSESDPAASPSSLLDSLIQN---CSRLKVPSLDTSVPSPDQQAKLVVSRF---MAGGAARREVVLTTFAQDGR-----PSLLAASRTHLALADPWRSILHVYFLPDSFARVATTEKRMLELPVGFLPRGLVLAASGGLYCLATQIKRGKGSEEG 275          
The following BLAST results are available for this feature:
BLAST of NO08G01760.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26583.16.700e-1732.60hypothetical protein Naga_100001g87 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01760NO08G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01760.2NO08G01760.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01760.2.cds1NO08G01760.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01760.2 ID=NO08G01760.2|Name=NO08G01760.2|organism=Nannochloropsis oceanica|type=mRNA|length=3036bp
TGACTCCCTCCCTCCCCGATGGCTGCTCGCAGGCGACAAGGAAGATAGCG
GCCGATTACAACCAAAACTGCTGCTGCTGCTGCTGCTGCTACTGTTTCTC
CTGCTTCTATACTCCTCCTCCTCTTCTTCCCAACCATCGTCCCACCGTCT
ACCCCCACCCTCACCGCCGCTGCTCTCGATCCTCTCGTTTCTCTCCGCTT
TCCATCCGCTGACCCCACCACCACGCTGGTGCCCAAACGAGAAGGAGGAA
GAGGACGAGTTGGAAGATTCCGGACGAACATTTTGCCCGCGACTCCAGTC
TGATGCTAACGAAGGCTCCCCGCGATGGCGACGGTCCTCGGCATTCTCTC
GACCAAACCTCCCTCCACCCCTTTCCCCACGTGGACGGTTACCACCACCA
CGGCCACCTTGCTCACCACAATCCCACTCATCCAGGCTACCTTCTCCACC
TCGATAACCATAGCCTCCTCCTCTGCTCCTTCCACCTCCTCCTCCTTCTC
CTCCTCCTCCTCCTCCTCTCCCCCTGCCATCGTTGGAGTCGTTGCCGTCC
CTATTGTAGCTGCTGCGTCCGCCTCTAGAAATGTTACCGCCACCACCTCC
ACCTCCTCTTTTTGTTTTTGATCCTTCCTCCCTCCCTCCCCATCCACCAT
CACCACCATGGTAGGAGGAGTTGTTGTCTGCCGTTTTGCTTCGAAAACCT
CCTCTCCTTTCGCTTCCCACAACCTTCTCACGTGTCCCGGAATTCATTGC
CACTGACTTCTCTGGCCCACTGTGTCTGTATGTCATGTGTGTGAGAGACT
ACCTCACGCATAATTTGATGACAGATTCGTACGTAGACCTCATGGTAGCT
TCAAATTATTGTACTGAGAACTCTGTGCGTGGGTCTTCACGTGCGAGGTT
GCCTCAGCGATTAGTCTTCACGCACGACCCAACGATCAACGACGCTCAAC
TCAACAACTCAACAATTCAACAACAGATGCAGCATGCGAGTGGTATATCT
CGGACTTTGCGATGATCTGTCGCCAAGCCGCAACTGGTTGGATGCTTGAC
GTCATCCAACCTTGCTTGATGTATTGACGATACATTACAGGTGCTGTTTC
TTTAAGTAGTGGGTATCTTGTGCTTTTACCGACGGATGGGAAAGTTGCCG
TTGTGCGGGTACCATTGGCGCAAGACCTGAGGGACGACTCACCTCGAGTC
ATGCTTCTAAACTCTCTCGAAACTATAGAAGAGGGGGGAACTTTTGATCA
TGGAGCTGTTTGTCCGAGCGGAAGCCGGATCGCGCTCGCCTACACGTGCA
GCTCCCTGCACATCCACAACATTTTAAGCAGTGCGGGGGACAGTGAGAAA
ATCCAGCATATCTCCCGATCGATAAGGTGTGTGCCTACCAGAACGAGCTC
GTCTATTTCTGTTGCATTATTCCAAATTTTCTACATAACACGCACACACC
ACAGAAAAAGCCCCGATCCGATACGCAGATCAAAGAGGCTTCGACACGTG
GCTTGGCAGGTGCTTCCTTGTGGTTACGTCGTCGGCGCGGCGAATGCCAA
GCATTTGACCATATACGATGCTTGGGAGTCGATAGATTCAAATCTTCGTG
TTCTTGGTGGGATCAAGTCTTCAGAGCCCATTGATGGGTGGACATGGCTG
AGTAACCGGGACAGAATCGCTCTCTTGGCGGGAAACAAAGTGAGCATTCA
CGATCGAGTTTTGTCCAAGGATTATGAGCAAAATCCATCATTCTTGCCTT
CTCCGTCGCTGGGAGCGGCTGTGGAGAAGTGGAAGCGGCTGGTGCCTTTG
CCCGGGGGGGACGCTGGAACAGCCTTTGTCGCTGTCCTGACTGAGCCATG
CTTCTTGCAGGCTCAAATACGCGCGAAGACCGAGGATGGTCACGGGTTGA
ACGAGACACTGGAGGCACTCCGAACCGTGCAGGTCCAGCAGAAGACGAAG
AATAAATCAAAGAGAAAAGGAATGGAGAATCAGGGGGGCATTATTAAGGA
TGAGAGGGTCGAGGAAGAAGAGACAGCGGACAAGCAGGCAGATAGCGGTA
GCAGCGGCAGCGGCAGTGACGCTGTTGTTGATCTGCGCGGTAGGATTGGT
GGAGGTGGAGGTGTCTCCGCTTCCTTTTCGTTGTTGAATATCCTCACGGG
AGGCATCACACGTCCTCCACGATGCACTGGACTATTCTTACCACCGCCAC
CCCCCGCGCAACAGAGCAATGATGATGGAGCCCAGCTCCTGCTTCTAAAA
GTACCGGTAGCGTCATCCTCAGGGCCATCAGACGAGCAAGAGGTGCTGCG
TTCCATTCCGGTGGGGAGAAATATCTGCCCCATGCCAGGACTCCTTGCCG
CCTCGGAGGCCCACGTCGCGATAGGTGACCCATGGTCGTCCACCATACTA
ATTCACCGCCTGTCCGATGACTTTCCTGCTGTGACATCGACGAAAGAGAA
GCAATTAAAGATGCCAGCTGGGTTGGTCCCCCGTGGTTTACGCTTTTTCG
GTGATCATACCCTCGTTTGTCTTGCTGTTGAGGCGGCAGGAGCTAAGGGC
GGAGGCAGCGGAAGAGGAAGAAAAGAAGGAGGAGGAGGAAAAGGAGGAAA
AGGAGGAGACGGAGGAGAAGGAGGAAAAAGAGGAGGAGGACGAGGAACAT
TGCAAGGGTGTACTAGTGCGAGCTTGATTGAGTTCCTCTTGGAGGATGAA
GAGCCGCCAGAGGAATCAAAAGGGCTCTCGACCATCGTGTTGAACGTTGT
TGGTCTTTCAGCAGGTGTGAGCCAACAACAACAAGAAGAGCAGCAGCAGC
AGCAGCAGCAGCACGATGTTATGCCCTTTCTCCGCAGCTTTCGGGATGAG
ATGAGAGAGCGATTTGACGAGCTGGAAAGCAAAATGACGACGCTGGAACG
AAGGCTCGGCGAATTGTGAGTGAAGAAAGTGTTATCTTTCTGGACCACCA
AGGTGTTGATTTCGGTGTGAGTGAATCAACAATGTGCATGAACATGAACA
TAATGAAATAGATTAATGGGCGTTTGCGCGCGGTAA
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protein sequence of NO08G01760.2

>NO08G01760.2-protein ID=NO08G01760.2-protein|Name=NO08G01760.2|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MLLNSLETIEEGGTFDHGAVCPSGSRIALAYTCSSLHIHNILSSAGDSEK
IQHISRSIRCVPTRTSSSISVALFQIFYITRTHHRKSPDPIRRSKRLRHV
AWQVLPCGYVVGAANAKHLTIYDAWESIDSNLRVLGGIKSSEPIDGWTWL
SNRDRIALLAGNKVSIHDRVLSKDYEQNPSFLPSPSLGAAVEKWKRLVPL
PGGDAGTAFVAVLTEPCFLQAQIRAKTEDGHGLNETLEALRTVQVQQKTK
NKSKRKGMENQGGIIKDERVEEEETADKQADSGSSGSGSDAVVDLRGRIG
GGGGVSASFSLLNILTGGITRPPRCTGLFLPPPPPAQQSNDDGAQLLLLK
VPVASSSGPSDEQEVLRSIPVGRNICPMPGLLAASEAHVAIGDPWSSTIL
IHRLSDDFPAVTSTKEKQLKMPAGLVPRGLRFFGDHTLVCLAVEAAGAKG
GGSGRGRKEGGGGKGGKGGDGGEGGKRGGGRGTLQGCTSASLIEFLLEDE
EPPEESKGLSTIVLNVVGLSAGVSQQQQEEQQQQQQQHDVMPFLRSFRDE
MRERFDELESKMTTLERRLGEL*
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mRNA from alignment at chr8:543067..546189+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01760.2 ID=NO08G01760.2|Name=NO08G01760.2|organism=Nannochloropsis oceanica|type=mRNA|length=3123bp|location=Sequence derived from alignment at chr8:543067..546189+ (Nannochloropsis oceanica)
TGACTCCCTCCCTCCCCGATGGCTGCTCGCAGGCGACAAGGAAGATAGCG GCCGATTACAACCAAAACTGCTGCTGCTGCTGCTGCTGCTACTGTTTCTC CTGCTTCTATACTCCTCCTCCTCTTCTTCCCAACCATCGTCCCACCGTCT ACCCCCACCCTCACCGCCGCTGCTCTCGATCCTCTCGTTTCTCTCCGCTT TCCATCCGCTGACCCCACCACCACGCTGGTGCCCAAACGAGAAGGAGGAA GAGGACGAGTTGGAAGATTCCGGACGAACATTTTGCCCGCGACTCCAGTC TGATGCTAACGAAGGCTCCCCGCGATGGCGACGGTCCTCGGCATTCTCTC GACCAAACCTCCCTCCACCCCTTTCCCCACGTGGACGGTTACCACCACCA CGGCCACCTTGCTCACCACAATCCCACTCATCCAGGCTACCTTCTCCACC TCGATAACCATAGCCTCCTCCTCTGCTCCTTCCACCTCCTCCTCCTTCTC CTCCTCCTCCTCCTCCTCTCCCCCTGCCATCGTTGGAGTCGTTGCCGTCC CTATTGTAGCTGCTGCGTCCGCCTCTAGAAATGTTACCGCCACCACCTCC ACCTCCTCTTTTTGTTTTTGATCCTTCCTCCCTCCCTCCCCATCCACCAT CACCACCATGGTAGGAGGAGTTGTTGTCTGCCGTTTTGCTTCGAAAACCT CCTCTCCTTTCGCTTCCCACAACCTTCTCACGTGTCCCGGAATTCATTGC CACTGACTTCTCTGGCCCACTGTGTCTGTATGTCATGTGTGTGAGAGACT ACCTCACGCATAATTTGATGACAGATTCGTACGTAGACCTCATGGTAGCT TCAAATTATTGTACTGAGAACTCTGTGCGTGGGTCTTCACGTGCGAGGTT GCCTCAGCGATTAGTCTTCACGCACGACCCAACGATCAACGACGCTCAAC TCAACAACTCAACAATTCAACAACAGATGCAGCATGCGAGTGGTATATCT CGGACTTTGCGATGATCTGTCGCCAAGCCGCAACTGGTTGGATGGTGAGT GCTCCCGCTACTGCCACAGACAACCACCCTTACCCCGTGCTTAAGTTACC TTACAAGCCCCTTTTCGTACCCTAACCCTAGCTTGACGTCATCCAACCTT GCTTGATGTATTGACGATACATTACAGGTGCTGTTTCTTTAAGTAGTGGG TATCTTGTGCTTTTACCGACGGATGGGAAAGTTGCCGTTGTGCGGGTACC ATTGGCGCAAGACCTGAGGGACGACTCACCTCGAGTCATGCTTCTAAACT CTCTCGAAACTATAGAAGAGGGGGGAACTTTTGATCATGGAGCTGTTTGT CCGAGCGGAAGCCGGATCGCGCTCGCCTACACGTGCAGCTCCCTGCACAT CCACAACATTTTAAGCAGTGCGGGGGACAGTGAGAAAATCCAGCATATCT CCCGATCGATAAGGTGTGTGCCTACCAGAACGAGCTCGTCTATTTCTGTT GCATTATTCCAAATTTTCTACATAACACGCACACACCACAGAAAAAGCCC CGATCCGATACGCAGATCAAAGAGGCTTCGACACGTGGCTTGGCAGGTGC TTCCTTGTGGTTACGTCGTCGGCGCGGCGAATGCCAAGCATTTGACCATA TACGATGCTTGGGAGTCGATAGATTCAAATCTTCGTGTTCTTGGTGGGAT CAAGTCTTCAGAGCCCATTGATGGGTGGACATGGCTGAGTAACCGGGACA GAATCGCTCTCTTGGCGGGAAACAAAGTGAGCATTCACGATCGAGTTTTG TCCAAGGATTATGAGCAAAATCCATCATTCTTGCCTTCTCCGTCGCTGGG AGCGGCTGTGGAGAAGTGGAAGCGGCTGGTGCCTTTGCCCGGGGGGGACG CTGGAACAGCCTTTGTCGCTGTCCTGACTGAGCCATGCTTCTTGCAGGCT CAAATACGCGCGAAGACCGAGGATGGTCACGGGTTGAACGAGACACTGGA GGCACTCCGAACCGTGCAGGTCCAGCAGAAGACGAAGAATAAATCAAAGA GAAAAGGAATGGAGAATCAGGGGGGCATTATTAAGGATGAGAGGGTCGAG GAAGAAGAGACAGCGGACAAGCAGGCAGATAGCGGTAGCAGCGGCAGCGG CAGTGACGCTGTTGTTGATCTGCGCGGTAGGATTGGTGGAGGTGGAGGTG TCTCCGCTTCCTTTTCGTTGTTGAATATCCTCACGGGAGGCATCACACGT CCTCCACGATGCACTGGACTATTCTTACCACCGCCACCCCCCGCGCAACA GAGCAATGATGATGGAGCCCAGCTCCTGCTTCTAAAAGTACCGGTAGCGT CATCCTCAGGGCCATCAGACGAGCAAGAGGTGCTGCGTTCCATTCCGGTG GGGAGAAATATCTGCCCCATGCCAGGACTCCTTGCCGCCTCGGAGGCCCA CGTCGCGATAGGTGACCCATGGTCGTCCACCATACTAATTCACCGCCTGT CCGATGACTTTCCTGCTGTGACATCGACGAAAGAGAAGCAATTAAAGATG CCAGCTGGGTTGGTCCCCCGTGGTTTACGCTTTTTCGGTGATCATACCCT CGTTTGTCTTGCTGTTGAGGCGGCAGGAGCTAAGGGCGGAGGCAGCGGAA GAGGAAGAAAAGAAGGAGGAGGAGGAAAAGGAGGAAAAGGAGGAGACGGA GGAGAAGGAGGAAAAAGAGGAGGAGGACGAGGAACATTGCAAGGGTGTAC TAGTGCGAGCTTGATTGAGTTCCTCTTGGAGGATGAAGAGCCGCCAGAGG AATCAAAAGGGCTCTCGACCATCGTGTTGAACGTTGTTGGTCTTTCAGCA GGTGTGAGCCAACAACAACAAGAAGAGCAGCAGCAGCAGCAGCAGCAGCA CGATGTTATGCCCTTTCTCCGCAGCTTTCGGGATGAGATGAGAGAGCGAT TTGACGAGCTGGAAAGCAAAATGACGACGCTGGAACGAAGGCTCGGCGAA TTGTGAGTGAAGAAAGTGTTATCTTTCTGGACCACCAAGGTGTTGATTTC GGTGTGAGTGAATCAACAATGTGCATGAACATGAACATAATGAAATAGAT TAATGGGCGTTTGCGCGCGGTAA
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Coding sequence (CDS) from alignment at chr8:543067..546189+

>NO08G01760.2 ID=NO08G01760.2|Name=NO08G01760.2|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr8:543067..546189+ (Nannochloropsis oceanica)
ATGCTTCTAAACTCTCTCGAAACTATAGAAGAGGGGGGAACTTTTGATCA
TGGAGCTGTTTGTCCGAGCGGAAGCCGGATCGCGCTCGCCTACACGTGCA
GCTCCCTGCACATCCACAACATTTTAAGCAGTGCGGGGGACAGTGAGAAA
ATCCAGCATATCTCCCGATCGATAAGGTGTGTGCCTACCAGAACGAGCTC
GTCTATTTCTGTTGCATTATTCCAAATTTTCTACATAACACGCACACACC
ACAGAAAAAGCCCCGATCCGATACGCAGATCAAAGAGGCTTCGACACGTG
GCTTGGCAGGTGCTTCCTTGTGGTTACGTCGTCGGCGCGGCGAATGCCAA
GCATTTGACCATATACGATGCTTGGGAGTCGATAGATTCAAATCTTCGTG
TTCTTGGTGGGATCAAGTCTTCAGAGCCCATTGATGGGTGGACATGGCTG
AGTAACCGGGACAGAATCGCTCTCTTGGCGGGAAACAAAGTGAGCATTCA
CGATCGAGTTTTGTCCAAGGATTATGAGCAAAATCCATCATTCTTGCCTT
CTCCGTCGCTGGGAGCGGCTGTGGAGAAGTGGAAGCGGCTGGTGCCTTTG
CCCGGGGGGGACGCTGGAACAGCCTTTGTCGCTGTCCTGACTGAGCCATG
CTTCTTGCAGGCTCAAATACGCGCGAAGACCGAGGATGGTCACGGGTTGA
ACGAGACACTGGAGGCACTCCGAACCGTGCAGGTCCAGCAGAAGACGAAG
AATAAATCAAAGAGAAAAGGAATGGAGAATCAGGGGGGCATTATTAAGGA
TGAGAGGGTCGAGGAAGAAGAGACAGCGGACAAGCAGGCAGATAGCGGTA
GCAGCGGCAGCGGCAGTGACGCTGTTGTTGATCTGCGCGGTAGGATTGGT
GGAGGTGGAGGTGTCTCCGCTTCCTTTTCGTTGTTGAATATCCTCACGGG
AGGCATCACACGTCCTCCACGATGCACTGGACTATTCTTACCACCGCCAC
CCCCCGCGCAACAGAGCAATGATGATGGAGCCCAGCTCCTGCTTCTAAAA
GTACCGGTAGCGTCATCCTCAGGGCCATCAGACGAGCAAGAGGTGCTGCG
TTCCATTCCGGTGGGGAGAAATATCTGCCCCATGCCAGGACTCCTTGCCG
CCTCGGAGGCCCACGTCGCGATAGGTGACCCATGGTCGTCCACCATACTA
ATTCACCGCCTGTCCGATGACTTTCCTGCTGTGACATCGACGAAAGAGAA
GCAATTAAAGATGCCAGCTGGGTTGGTCCCCCGTGGTTTACGCTTTTTCG
GTGATCATACCCTCGTTTGTCTTGCTGTTGAGGCGGCAGGAGCTAAGGGC
GGAGGCAGCGGAAGAGGAAGAAAAGAAGGAGGAGGAGGAAAAGGAGGAAA
AGGAGGAGACGGAGGAGAAGGAGGAAAAAGAGGAGGAGGACGAGGAACAT
TGCAAGGGTGTACTAGTGCGAGCTTGATTGAGTTCCTCTTGGAGGATGAA
GAGCCGCCAGAGGAATCAAAAGGGCTCTCGACCATCGTGTTGAACGTTGT
TGGTCTTTCAGCAGGTGTGAGCCAACAACAACAAGAAGAGCAGCAGCAGC
AGCAGCAGCAGCACGATGTTATGCCCTTTCTCCGCAGCTTTCGGGATGAG
ATGAGAGAGCGATTTGACGAGCTGGAAAGCAAAATGACGACGCTGGAACG
AAGGCTCGGCGAATTGTGA
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Synonyms
Publications