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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:543067..546189 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01760.2 vs.
Match: EWM26583.1 (hypothetical protein Naga_100001g87 [Nannochloropsis gaditana]) HSP 1 Score: 98.6 bits (244), Expect = 6.700e-17 Identity = 89/273 (32.60%), Postives = 139/273 (50.92%), Query Frame = 0
Query: 192 EKWKRLVP-LPGGDAGTAFVAVLTEPCFLQAQIRAKTEDGHGLNETLEALRTVQVQQKTKNKSKRKGM-ENQGG-----IIKDERVEEEETADKQADSGSSGSGSDA--VVDLRGRIGGGGGVSASFSLLNILTGGITRPPRCTGLFLPPPPPAQQSNDDGAQLLLLKVPVASSSGPSDEQEVLRSIPV-GRNICPMPGLLAASEAHVAIGDPWSSTILIHRLSDDFPAVTSTKEKQLKMPAGLVPRGLRFFGDHTLVCLAVEAAGAKGGGSG 455
EK K + P L GD T + A+LTEPC LQ Q+ + G+NETL LR +Q Q + + +R+G+ E+ GG ++ E+ + D GS G G+++ V+DL G++G G + S ++L I C+ L +P + S D A+L++ + + G + + VL + GR P LLAAS H+A+ DPW S + ++ L D F V +T+++ L++P G +PRGL L CLA + KG G
Sbjct: 17 EKRKVMSPVLVSGD--TVYFAILTEPC-LQTQVCSADSKHRGVNETLARLRGLQGQIRQRENMEREGVREDDGGKTNAMSLQGGGKEKVKAPVVTEDGGSVGIGNNSIEVIDLCGKLGLGSESDPAASPSSLLDSLIQN---CSRLKVPSLDTSVPSPDQQAKLVVSRF---MAGGAARREVVLTTFAQDGR-----PSLLAASRTHLALADPWRSILHVYFLPDSFARVATTEKRMLELPVGFLPRGLVLAASGGLYCLATQIKRGKGSEEG 275
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01760.2 ID=NO08G01760.2|Name=NO08G01760.2|organism=Nannochloropsis oceanica|type=mRNA|length=3036bp TGACTCCCTCCCTCCCCGATGGCTGCTCGCAGGCGACAAGGAAGATAGCG GCCGATTACAACCAAAACTGCTGCTGCTGCTGCTGCTGCTACTGTTTCTC CTGCTTCTATACTCCTCCTCCTCTTCTTCCCAACCATCGTCCCACCGTCT ACCCCCACCCTCACCGCCGCTGCTCTCGATCCTCTCGTTTCTCTCCGCTT TCCATCCGCTGACCCCACCACCACGCTGGTGCCCAAACGAGAAGGAGGAA GAGGACGAGTTGGAAGATTCCGGACGAACATTTTGCCCGCGACTCCAGTC TGATGCTAACGAAGGCTCCCCGCGATGGCGACGGTCCTCGGCATTCTCTC GACCAAACCTCCCTCCACCCCTTTCCCCACGTGGACGGTTACCACCACCA CGGCCACCTTGCTCACCACAATCCCACTCATCCAGGCTACCTTCTCCACC TCGATAACCATAGCCTCCTCCTCTGCTCCTTCCACCTCCTCCTCCTTCTC CTCCTCCTCCTCCTCCTCTCCCCCTGCCATCGTTGGAGTCGTTGCCGTCC CTATTGTAGCTGCTGCGTCCGCCTCTAGAAATGTTACCGCCACCACCTCC ACCTCCTCTTTTTGTTTTTGATCCTTCCTCCCTCCCTCCCCATCCACCAT CACCACCATGGTAGGAGGAGTTGTTGTCTGCCGTTTTGCTTCGAAAACCT CCTCTCCTTTCGCTTCCCACAACCTTCTCACGTGTCCCGGAATTCATTGC CACTGACTTCTCTGGCCCACTGTGTCTGTATGTCATGTGTGTGAGAGACT ACCTCACGCATAATTTGATGACAGATTCGTACGTAGACCTCATGGTAGCT TCAAATTATTGTACTGAGAACTCTGTGCGTGGGTCTTCACGTGCGAGGTT GCCTCAGCGATTAGTCTTCACGCACGACCCAACGATCAACGACGCTCAAC TCAACAACTCAACAATTCAACAACAGATGCAGCATGCGAGTGGTATATCT CGGACTTTGCGATGATCTGTCGCCAAGCCGCAACTGGTTGGATGCTTGAC GTCATCCAACCTTGCTTGATGTATTGACGATACATTACAGGTGCTGTTTC TTTAAGTAGTGGGTATCTTGTGCTTTTACCGACGGATGGGAAAGTTGCCG TTGTGCGGGTACCATTGGCGCAAGACCTGAGGGACGACTCACCTCGAGTC ATGCTTCTAAACTCTCTCGAAACTATAGAAGAGGGGGGAACTTTTGATCA TGGAGCTGTTTGTCCGAGCGGAAGCCGGATCGCGCTCGCCTACACGTGCA GCTCCCTGCACATCCACAACATTTTAAGCAGTGCGGGGGACAGTGAGAAA ATCCAGCATATCTCCCGATCGATAAGGTGTGTGCCTACCAGAACGAGCTC GTCTATTTCTGTTGCATTATTCCAAATTTTCTACATAACACGCACACACC ACAGAAAAAGCCCCGATCCGATACGCAGATCAAAGAGGCTTCGACACGTG GCTTGGCAGGTGCTTCCTTGTGGTTACGTCGTCGGCGCGGCGAATGCCAA GCATTTGACCATATACGATGCTTGGGAGTCGATAGATTCAAATCTTCGTG TTCTTGGTGGGATCAAGTCTTCAGAGCCCATTGATGGGTGGACATGGCTG AGTAACCGGGACAGAATCGCTCTCTTGGCGGGAAACAAAGTGAGCATTCA CGATCGAGTTTTGTCCAAGGATTATGAGCAAAATCCATCATTCTTGCCTT CTCCGTCGCTGGGAGCGGCTGTGGAGAAGTGGAAGCGGCTGGTGCCTTTG CCCGGGGGGGACGCTGGAACAGCCTTTGTCGCTGTCCTGACTGAGCCATG CTTCTTGCAGGCTCAAATACGCGCGAAGACCGAGGATGGTCACGGGTTGA ACGAGACACTGGAGGCACTCCGAACCGTGCAGGTCCAGCAGAAGACGAAG AATAAATCAAAGAGAAAAGGAATGGAGAATCAGGGGGGCATTATTAAGGA TGAGAGGGTCGAGGAAGAAGAGACAGCGGACAAGCAGGCAGATAGCGGTA GCAGCGGCAGCGGCAGTGACGCTGTTGTTGATCTGCGCGGTAGGATTGGT GGAGGTGGAGGTGTCTCCGCTTCCTTTTCGTTGTTGAATATCCTCACGGG AGGCATCACACGTCCTCCACGATGCACTGGACTATTCTTACCACCGCCAC CCCCCGCGCAACAGAGCAATGATGATGGAGCCCAGCTCCTGCTTCTAAAA GTACCGGTAGCGTCATCCTCAGGGCCATCAGACGAGCAAGAGGTGCTGCG TTCCATTCCGGTGGGGAGAAATATCTGCCCCATGCCAGGACTCCTTGCCG CCTCGGAGGCCCACGTCGCGATAGGTGACCCATGGTCGTCCACCATACTA ATTCACCGCCTGTCCGATGACTTTCCTGCTGTGACATCGACGAAAGAGAA GCAATTAAAGATGCCAGCTGGGTTGGTCCCCCGTGGTTTACGCTTTTTCG GTGATCATACCCTCGTTTGTCTTGCTGTTGAGGCGGCAGGAGCTAAGGGC GGAGGCAGCGGAAGAGGAAGAAAAGAAGGAGGAGGAGGAAAAGGAGGAAA AGGAGGAGACGGAGGAGAAGGAGGAAAAAGAGGAGGAGGACGAGGAACAT TGCAAGGGTGTACTAGTGCGAGCTTGATTGAGTTCCTCTTGGAGGATGAA GAGCCGCCAGAGGAATCAAAAGGGCTCTCGACCATCGTGTTGAACGTTGT TGGTCTTTCAGCAGGTGTGAGCCAACAACAACAAGAAGAGCAGCAGCAGC AGCAGCAGCAGCACGATGTTATGCCCTTTCTCCGCAGCTTTCGGGATGAG ATGAGAGAGCGATTTGACGAGCTGGAAAGCAAAATGACGACGCTGGAACG AAGGCTCGGCGAATTGTGAGTGAAGAAAGTGTTATCTTTCTGGACCACCA AGGTGTTGATTTCGGTGTGAGTGAATCAACAATGTGCATGAACATGAACA TAATGAAATAGATTAATGGGCGTTTGCGCGCGGTAA back to topprotein sequence of NO08G01760.2 >NO08G01760.2-protein ID=NO08G01760.2-protein|Name=NO08G01760.2|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp MLLNSLETIEEGGTFDHGAVCPSGSRIALAYTCSSLHIHNILSSAGDSEK IQHISRSIRCVPTRTSSSISVALFQIFYITRTHHRKSPDPIRRSKRLRHV AWQVLPCGYVVGAANAKHLTIYDAWESIDSNLRVLGGIKSSEPIDGWTWL SNRDRIALLAGNKVSIHDRVLSKDYEQNPSFLPSPSLGAAVEKWKRLVPL PGGDAGTAFVAVLTEPCFLQAQIRAKTEDGHGLNETLEALRTVQVQQKTK NKSKRKGMENQGGIIKDERVEEEETADKQADSGSSGSGSDAVVDLRGRIG GGGGVSASFSLLNILTGGITRPPRCTGLFLPPPPPAQQSNDDGAQLLLLK VPVASSSGPSDEQEVLRSIPVGRNICPMPGLLAASEAHVAIGDPWSSTIL IHRLSDDFPAVTSTKEKQLKMPAGLVPRGLRFFGDHTLVCLAVEAAGAKG GGSGRGRKEGGGGKGGKGGDGGEGGKRGGGRGTLQGCTSASLIEFLLEDE EPPEESKGLSTIVLNVVGLSAGVSQQQQEEQQQQQQQHDVMPFLRSFRDE MRERFDELESKMTTLERRLGEL* back to topmRNA from alignment at chr8:543067..546189+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01760.2 ID=NO08G01760.2|Name=NO08G01760.2|organism=Nannochloropsis oceanica|type=mRNA|length=3123bp|location=Sequence derived from alignment at chr8:543067..546189+ (Nannochloropsis oceanica) TGACTCCCTCCCTCCCCGATGGCTGCTCGCAGGCGACAAGGAAGATAGCG
GCCGATTACAACCAAAACTGCTGCTGCTGCTGCTGCTGCTACTGTTTCTC
CTGCTTCTATACTCCTCCTCCTCTTCTTCCCAACCATCGTCCCACCGTCT
ACCCCCACCCTCACCGCCGCTGCTCTCGATCCTCTCGTTTCTCTCCGCTT
TCCATCCGCTGACCCCACCACCACGCTGGTGCCCAAACGAGAAGGAGGAA
GAGGACGAGTTGGAAGATTCCGGACGAACATTTTGCCCGCGACTCCAGTC
TGATGCTAACGAAGGCTCCCCGCGATGGCGACGGTCCTCGGCATTCTCTC
GACCAAACCTCCCTCCACCCCTTTCCCCACGTGGACGGTTACCACCACCA
CGGCCACCTTGCTCACCACAATCCCACTCATCCAGGCTACCTTCTCCACC
TCGATAACCATAGCCTCCTCCTCTGCTCCTTCCACCTCCTCCTCCTTCTC
CTCCTCCTCCTCCTCCTCTCCCCCTGCCATCGTTGGAGTCGTTGCCGTCC
CTATTGTAGCTGCTGCGTCCGCCTCTAGAAATGTTACCGCCACCACCTCC
ACCTCCTCTTTTTGTTTTTGATCCTTCCTCCCTCCCTCCCCATCCACCAT
CACCACCATGGTAGGAGGAGTTGTTGTCTGCCGTTTTGCTTCGAAAACCT
CCTCTCCTTTCGCTTCCCACAACCTTCTCACGTGTCCCGGAATTCATTGC
CACTGACTTCTCTGGCCCACTGTGTCTGTATGTCATGTGTGTGAGAGACT
ACCTCACGCATAATTTGATGACAGATTCGTACGTAGACCTCATGGTAGCT
TCAAATTATTGTACTGAGAACTCTGTGCGTGGGTCTTCACGTGCGAGGTT
GCCTCAGCGATTAGTCTTCACGCACGACCCAACGATCAACGACGCTCAAC
TCAACAACTCAACAATTCAACAACAGATGCAGCATGCGAGTGGTATATCT
CGGACTTTGCGATGATCTGTCGCCAAGCCGCAACTGGTTGGATGGTGAGT
GCTCCCGCTACTGCCACAGACAACCACCCTTACCCCGTGCTTAAGTTACC
TTACAAGCCCCTTTTCGTACCCTAACCCTAGCTTGACGTCATCCAACCTT
GCTTGATGTATTGACGATACATTACAGGTGCTGTTTCTTTAAGTAGTGGG
TATCTTGTGCTTTTACCGACGGATGGGAAAGTTGCCGTTGTGCGGGTACC
ATTGGCGCAAGACCTGAGGGACGACTCACCTCGAGTCATGCTTCTAAACT
CTCTCGAAACTATAGAAGAGGGGGGAACTTTTGATCATGGAGCTGTTTGT
CCGAGCGGAAGCCGGATCGCGCTCGCCTACACGTGCAGCTCCCTGCACAT
CCACAACATTTTAAGCAGTGCGGGGGACAGTGAGAAAATCCAGCATATCT
CCCGATCGATAAGGTGTGTGCCTACCAGAACGAGCTCGTCTATTTCTGTT
GCATTATTCCAAATTTTCTACATAACACGCACACACCACAGAAAAAGCCC
CGATCCGATACGCAGATCAAAGAGGCTTCGACACGTGGCTTGGCAGGTGC
TTCCTTGTGGTTACGTCGTCGGCGCGGCGAATGCCAAGCATTTGACCATA
TACGATGCTTGGGAGTCGATAGATTCAAATCTTCGTGTTCTTGGTGGGAT
CAAGTCTTCAGAGCCCATTGATGGGTGGACATGGCTGAGTAACCGGGACA
GAATCGCTCTCTTGGCGGGAAACAAAGTGAGCATTCACGATCGAGTTTTG
TCCAAGGATTATGAGCAAAATCCATCATTCTTGCCTTCTCCGTCGCTGGG
AGCGGCTGTGGAGAAGTGGAAGCGGCTGGTGCCTTTGCCCGGGGGGGACG
CTGGAACAGCCTTTGTCGCTGTCCTGACTGAGCCATGCTTCTTGCAGGCT
CAAATACGCGCGAAGACCGAGGATGGTCACGGGTTGAACGAGACACTGGA
GGCACTCCGAACCGTGCAGGTCCAGCAGAAGACGAAGAATAAATCAAAGA
GAAAAGGAATGGAGAATCAGGGGGGCATTATTAAGGATGAGAGGGTCGAG
GAAGAAGAGACAGCGGACAAGCAGGCAGATAGCGGTAGCAGCGGCAGCGG
CAGTGACGCTGTTGTTGATCTGCGCGGTAGGATTGGTGGAGGTGGAGGTG
TCTCCGCTTCCTTTTCGTTGTTGAATATCCTCACGGGAGGCATCACACGT
CCTCCACGATGCACTGGACTATTCTTACCACCGCCACCCCCCGCGCAACA
GAGCAATGATGATGGAGCCCAGCTCCTGCTTCTAAAAGTACCGGTAGCGT
CATCCTCAGGGCCATCAGACGAGCAAGAGGTGCTGCGTTCCATTCCGGTG
GGGAGAAATATCTGCCCCATGCCAGGACTCCTTGCCGCCTCGGAGGCCCA
CGTCGCGATAGGTGACCCATGGTCGTCCACCATACTAATTCACCGCCTGT
CCGATGACTTTCCTGCTGTGACATCGACGAAAGAGAAGCAATTAAAGATG
CCAGCTGGGTTGGTCCCCCGTGGTTTACGCTTTTTCGGTGATCATACCCT
CGTTTGTCTTGCTGTTGAGGCGGCAGGAGCTAAGGGCGGAGGCAGCGGAA
GAGGAAGAAAAGAAGGAGGAGGAGGAAAAGGAGGAAAAGGAGGAGACGGA
GGAGAAGGAGGAAAAAGAGGAGGAGGACGAGGAACATTGCAAGGGTGTAC
TAGTGCGAGCTTGATTGAGTTCCTCTTGGAGGATGAAGAGCCGCCAGAGG
AATCAAAAGGGCTCTCGACCATCGTGTTGAACGTTGTTGGTCTTTCAGCA
GGTGTGAGCCAACAACAACAAGAAGAGCAGCAGCAGCAGCAGCAGCAGCA
CGATGTTATGCCCTTTCTCCGCAGCTTTCGGGATGAGATGAGAGAGCGAT
TTGACGAGCTGGAAAGCAAAATGACGACGCTGGAACGAAGGCTCGGCGAA
TTGTGAGTGAAGAAAGTGTTATCTTTCTGGACCACCAAGGTGTTGATTTC
GGTGTGAGTGAATCAACAATGTGCATGAACATGAACATAATGAAATAGAT
TAATGGGCGTTTGCGCGCGGTAA back to topCoding sequence (CDS) from alignment at chr8:543067..546189+ >NO08G01760.2 ID=NO08G01760.2|Name=NO08G01760.2|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr8:543067..546189+ (Nannochloropsis oceanica) ATGCTTCTAAACTCTCTCGAAACTATAGAAGAGGGGGGAACTTTTGATCA TGGAGCTGTTTGTCCGAGCGGAAGCCGGATCGCGCTCGCCTACACGTGCA GCTCCCTGCACATCCACAACATTTTAAGCAGTGCGGGGGACAGTGAGAAA ATCCAGCATATCTCCCGATCGATAAGGTGTGTGCCTACCAGAACGAGCTC GTCTATTTCTGTTGCATTATTCCAAATTTTCTACATAACACGCACACACC ACAGAAAAAGCCCCGATCCGATACGCAGATCAAAGAGGCTTCGACACGTG GCTTGGCAGGTGCTTCCTTGTGGTTACGTCGTCGGCGCGGCGAATGCCAA GCATTTGACCATATACGATGCTTGGGAGTCGATAGATTCAAATCTTCGTG TTCTTGGTGGGATCAAGTCTTCAGAGCCCATTGATGGGTGGACATGGCTG AGTAACCGGGACAGAATCGCTCTCTTGGCGGGAAACAAAGTGAGCATTCA CGATCGAGTTTTGTCCAAGGATTATGAGCAAAATCCATCATTCTTGCCTT CTCCGTCGCTGGGAGCGGCTGTGGAGAAGTGGAAGCGGCTGGTGCCTTTG CCCGGGGGGGACGCTGGAACAGCCTTTGTCGCTGTCCTGACTGAGCCATG CTTCTTGCAGGCTCAAATACGCGCGAAGACCGAGGATGGTCACGGGTTGA ACGAGACACTGGAGGCACTCCGAACCGTGCAGGTCCAGCAGAAGACGAAG AATAAATCAAAGAGAAAAGGAATGGAGAATCAGGGGGGCATTATTAAGGA TGAGAGGGTCGAGGAAGAAGAGACAGCGGACAAGCAGGCAGATAGCGGTA GCAGCGGCAGCGGCAGTGACGCTGTTGTTGATCTGCGCGGTAGGATTGGT GGAGGTGGAGGTGTCTCCGCTTCCTTTTCGTTGTTGAATATCCTCACGGG AGGCATCACACGTCCTCCACGATGCACTGGACTATTCTTACCACCGCCAC CCCCCGCGCAACAGAGCAATGATGATGGAGCCCAGCTCCTGCTTCTAAAA GTACCGGTAGCGTCATCCTCAGGGCCATCAGACGAGCAAGAGGTGCTGCG TTCCATTCCGGTGGGGAGAAATATCTGCCCCATGCCAGGACTCCTTGCCG CCTCGGAGGCCCACGTCGCGATAGGTGACCCATGGTCGTCCACCATACTA ATTCACCGCCTGTCCGATGACTTTCCTGCTGTGACATCGACGAAAGAGAA GCAATTAAAGATGCCAGCTGGGTTGGTCCCCCGTGGTTTACGCTTTTTCG GTGATCATACCCTCGTTTGTCTTGCTGTTGAGGCGGCAGGAGCTAAGGGC GGAGGCAGCGGAAGAGGAAGAAAAGAAGGAGGAGGAGGAAAAGGAGGAAA AGGAGGAGACGGAGGAGAAGGAGGAAAAAGAGGAGGAGGACGAGGAACAT TGCAAGGGTGTACTAGTGCGAGCTTGATTGAGTTCCTCTTGGAGGATGAA GAGCCGCCAGAGGAATCAAAAGGGCTCTCGACCATCGTGTTGAACGTTGT TGGTCTTTCAGCAGGTGTGAGCCAACAACAACAAGAAGAGCAGCAGCAGC AGCAGCAGCAGCACGATGTTATGCCCTTTCTCCGCAGCTTTCGGGATGAG ATGAGAGAGCGATTTGACGAGCTGGAAAGCAAAATGACGACGCTGGAACG AAGGCTCGGCGAATTGTGA back to top
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