NO08G01760.1, NO08G01760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01760.1
Unique NameNO08G01760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2912
Alignment locationchr8:543067..546189 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:543067..546189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01760.1 vs.
Match: EWM26583.1 (hypothetical protein Naga_100001g87 [Nannochloropsis gaditana])

HSP 1 Score: 98.6 bits (244), Expect = 7.000e-17
Identity = 89/273 (32.60%), Postives = 139/273 (50.92%), Query Frame = 0 
Query:  223 EKWKRLVP-LPGGDAGTAFVAVLTEPCFLQAQIRAKTEDGHGLNETLEALRTVQVQQKTKNKSKRKGM-ENQGG-----IIKDERVEEEETADKQADSGSSGSGSDA--VVDLRGRIGGGGGVSASFSLLNILTGGITRPPRCTGLFLPPPPPAQQSNDDGAQLLLLKVPVASSSGPSDEQEVLRSIPV-GRNICPMPGLLAASEAHVAIGDPWSSTILIHRLSDDFPAVTSTKEKQLKMPAGLVPRGLRFFGDHTLVCLAVEAAGAKGGGSG 486
            EK K + P L  GD  T + A+LTEPC LQ Q+ +      G+NETL  LR +Q Q + +   +R+G+ E+ GG      ++    E+ +      D GS G G+++  V+DL G++G G     + S  ++L   I     C+ L +P    +  S D  A+L++ +     + G +  + VL +    GR     P LLAAS  H+A+ DPW S + ++ L D F  V +T+++ L++P G +PRGL       L CLA +    KG   G
Sbjct:   17 EKRKVMSPVLVSGD--TVYFAILTEPC-LQTQVCSADSKHRGVNETLARLRGLQGQIRQRENMEREGVREDDGGKTNAMSLQGGGKEKVKAPVVTEDGGSVGIGNNSIEVIDLCGKLGLGSESDPAASPSSLLDSLIQN---CSRLKVPSLDTSVPSPDQQAKLVVSRF---MAGGAARREVVLTTFAQDGR-----PSLLAASRTHLALADPWRSILHVYFLPDSFARVATTEKRMLELPVGFLPRGLVLAASGGLYCLATQIKRGKGSEEG 275
The following BLAST results are available for this feature:
BLAST of NO08G01760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26583.17.000e-1732.60hypothetical protein Naga_100001g87 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01760NO08G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01760.1NO08G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01760.1.cds1NO08G01760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01760.1.cds2NO08G01760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01760.1.cds3NO08G01760.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01760.1 ID=NO08G01760.1|Name=NO08G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2912bp
TGACTCCCTCCCTCCCCGATGGCTGCTCGCAGGCGACAAGGAAGATAGCG
GCCGATTACAACCAAAACTGCTGCTGCTGCTGCTGCTGCTACTGTTTCTC
CTGCTTCTATACTCCTCCTCCTCTTCTTCCCAACCATCGTCCCACCGTCT
ACCCCCACCCTCACCGCCGCTGCTCTCGATCCTCTCGTTTCTCTCCGCTT
TCCATCCGCTGACCCCACCACCACGCTGGTGCCCAAACGAGAAGGAGGAA
GAGGACGAGTTGGAAGATTCCGGACGAACATTTTGCCCGCGACTCCAGTC
TGATGCTAACGAAGGCTCCCCGCGATGGCGACGGTCCTCGGCATTCTCTC
GACCAAACCTCCCTCCACCCCTTTCCCCACGTGGACGGTTACCACCACCA
CGGCCACCTTGCTCACCACAATCCCACTCATCCAGGCTACCTTCTCCACC
TCGATAACCATAGCCTCCTCCTCTGCTCCTTCCACCTCCTCCTCCTTCTC
CTCCTCCTCCTCCTCCTCTCCCCCTGCCATCGTTGGAGTCGTTGCCGTCC
CTATTGTAGCTGCTGCGTCCGCCTCTAGAAATGTTACCGCCACCACCTCC
ACCTCCTCTTTTTGTTTTTGATCCTTCCTCCCTCCCTCCCCATCCACCAT
CACCACCATGGTAGGAGGAGTTGTTGTCTGCCGTTTTGCTTCGAAAACCT
CCTCTCCTTTCGCTTCCCACAACCTTCTCACGTGTCCCGGAATTCATTGC
CACTGACTTCTCTGGCCCACTGTGTCTGTATGTCATGTGTGTGAGAGACT
ACCTCACGCATAATTTGATGACAGATTCGTACGTAGACCTCATGGTAGCT
TCAAATTATTGTACTGAGAACTCTGTGCGTGGGTCTTCACGTGCGAGGTT
GCCTCAGCGATTAGTCTTCACGCACGACCCAACGATCAACGACGCTCAAC
TCAACAACTCAACAATTCAACAACAGATGCAGCATGCGAGTGGTATATCT
CGGACTTTGCGATGATCTGTCGCCAAGCCGCAACTGGTTGGATGGTGCTG
TTTCTTTAAGTAGTGGGTATCTTGTGCTTTTACCGACGGATGGGAAAGTT
GCCGTTGTGCGGGTACCATTGGCGCAAGACCTGAGGGACGACTCACCTCG
AGTCATGCTTCTAAACTCTCTCGAAACTATAGAAGAGGGGGGAACTTTTG
ATCATGGAGCTGTTTGTCCGAGCGGAAGCCGGATCGCGCTCGCCTACACG
TGCAGCTCCCTGCACATCCACAACATTTTAAGCAGTGCGGGGGACAGTGA
GAAAATCCAGCATATCTCCCGATCGATAAGAAAAAGCCCCGATCCGATAC
GCAGATCAAAGAGGCTTCGACACGTGGCTTGGCAGGTGCTTCCTTGTGGT
TACGTCGTCGGCGCGGCGAATGCCAAGCATTTGACCATATACGATGCTTG
GGAGTCGATAGATTCAAATCTTCGTGTTCTTGGTGGGATCAAGTCTTCAG
AGCCCATTGATGGGTGGACATGGCTGAGTAACCGGGACAGAATCGCTCTC
TTGGCGGGAAACAAAGTGAGCATTCACGATCGAGTTTTGTCCAAGGATTA
TGAGCAAAATCCATCATTCTTGCCTTCTCCGTCGCTGGGAGCGGCTGTGG
AGAAGTGGAAGCGGCTGGTGCCTTTGCCCGGGGGGGACGCTGGAACAGCC
TTTGTCGCTGTCCTGACTGAGCCATGCTTCTTGCAGGCTCAAATACGCGC
GAAGACCGAGGATGGTCACGGGTTGAACGAGACACTGGAGGCACTCCGAA
CCGTGCAGGTCCAGCAGAAGACGAAGAATAAATCAAAGAGAAAAGGAATG
GAGAATCAGGGGGGCATTATTAAGGATGAGAGGGTCGAGGAAGAAGAGAC
AGCGGACAAGCAGGCAGATAGCGGTAGCAGCGGCAGCGGCAGTGACGCTG
TTGTTGATCTGCGCGGTAGGATTGGTGGAGGTGGAGGTGTCTCCGCTTCC
TTTTCGTTGTTGAATATCCTCACGGGAGGCATCACACGTCCTCCACGATG
CACTGGACTATTCTTACCACCGCCACCCCCCGCGCAACAGAGCAATGATG
ATGGAGCCCAGCTCCTGCTTCTAAAAGTACCGGTAGCGTCATCCTCAGGG
CCATCAGACGAGCAAGAGGTGCTGCGTTCCATTCCGGTGGGGAGAAATAT
CTGCCCCATGCCAGGACTCCTTGCCGCCTCGGAGGCCCACGTCGCGATAG
GTGACCCATGGTCGTCCACCATACTAATTCACCGCCTGTCCGATGACTTT
CCTGCTGTGACATCGACGAAAGAGAAGCAATTAAAGATGCCAGCTGGGTT
GGTCCCCCGTGGTTTACGCTTTTTCGGTGATCATACCCTCGTTTGTCTTG
CTGTTGAGGCGGCAGGAGCTAAGGGCGGAGGCAGCGGAAGAGGAAGAAAA
GAAGGAGGAGGAGGAAAAGGAGGAAAAGGAGGAGACGGAGGAGAAGGAGG
AAAAAGAGGAGGAGGACGAGGAACATTGCAAGGGTGTACTAGTGCGAGCT
TGATTGAGTTCCTCTTGGAGGATGAAGAGCCGCCAGAGGAATCAAAAGGG
CTCTCGACCATCGTGTTGAACGTTGTTGGTCTTTCAGCAGGTGTGAGCCA
ACAACAACAAGAAGAGCAGCAGCAGCAGCAGCAGCAGCACGATGTTATGC
CCTTTCTCCGCAGCTTTCGGGATGAGATGAGAGAGCGATTTGACGAGCTG
GAAAGCAAAATGACGACGCTGGAACGAAGGCTCGGCGAATTGTGAGTGAA
GAAAGTGTTATCTTTCTGGACCACCAAGGTGTTGATTTCGGTGTGAGTGA
ATCAACAATGTGCATGAACATGAACATAATGAAATAGATTAATGGGCGTT
TGCGCGCGGTAA
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protein sequence of NO08G01760.1

>NO08G01760.1-protein ID=NO08G01760.1-protein|Name=NO08G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MRVVYLGLCDDLSPSRNWLDGAVSLSSGYLVLLPTDGKVAVVRVPLAQDL
RDDSPRVMLLNSLETIEEGGTFDHGAVCPSGSRIALAYTCSSLHIHNILS
SAGDSEKIQHISRSIRKSPDPIRRSKRLRHVAWQVLPCGYVVGAANAKHL
TIYDAWESIDSNLRVLGGIKSSEPIDGWTWLSNRDRIALLAGNKVSIHDR
VLSKDYEQNPSFLPSPSLGAAVEKWKRLVPLPGGDAGTAFVAVLTEPCFL
QAQIRAKTEDGHGLNETLEALRTVQVQQKTKNKSKRKGMENQGGIIKDER
VEEEETADKQADSGSSGSGSDAVVDLRGRIGGGGGVSASFSLLNILTGGI
TRPPRCTGLFLPPPPPAQQSNDDGAQLLLLKVPVASSSGPSDEQEVLRSI
PVGRNICPMPGLLAASEAHVAIGDPWSSTILIHRLSDDFPAVTSTKEKQL
KMPAGLVPRGLRFFGDHTLVCLAVEAAGAKGGGSGRGRKEGGGGKGGKGG
DGGEGGKRGGGRGTLQGCTSASLIEFLLEDEEPPEESKGLSTIVLNVVGL
SAGVSQQQQEEQQQQQQQHDVMPFLRSFRDEMRERFDELESKMTTLERRL
GEL*
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mRNA from alignment at chr8:543067..546189+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01760.1 ID=NO08G01760.1|Name=NO08G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=3123bp|location=Sequence derived from alignment at chr8:543067..546189+ (Nannochloropsis oceanica)
TGACTCCCTCCCTCCCCGATGGCTGCTCGCAGGCGACAAGGAAGATAGCG
GCCGATTACAACCAAAACTGCTGCTGCTGCTGCTGCTGCTACTGTTTCTC
CTGCTTCTATACTCCTCCTCCTCTTCTTCCCAACCATCGTCCCACCGTCT
ACCCCCACCCTCACCGCCGCTGCTCTCGATCCTCTCGTTTCTCTCCGCTT
TCCATCCGCTGACCCCACCACCACGCTGGTGCCCAAACGAGAAGGAGGAA
GAGGACGAGTTGGAAGATTCCGGACGAACATTTTGCCCGCGACTCCAGTC
TGATGCTAACGAAGGCTCCCCGCGATGGCGACGGTCCTCGGCATTCTCTC
GACCAAACCTCCCTCCACCCCTTTCCCCACGTGGACGGTTACCACCACCA
CGGCCACCTTGCTCACCACAATCCCACTCATCCAGGCTACCTTCTCCACC
TCGATAACCATAGCCTCCTCCTCTGCTCCTTCCACCTCCTCCTCCTTCTC
CTCCTCCTCCTCCTCCTCTCCCCCTGCCATCGTTGGAGTCGTTGCCGTCC
CTATTGTAGCTGCTGCGTCCGCCTCTAGAAATGTTACCGCCACCACCTCC
ACCTCCTCTTTTTGTTTTTGATCCTTCCTCCCTCCCTCCCCATCCACCAT
CACCACCATGGTAGGAGGAGTTGTTGTCTGCCGTTTTGCTTCGAAAACCT
CCTCTCCTTTCGCTTCCCACAACCTTCTCACGTGTCCCGGAATTCATTGC
CACTGACTTCTCTGGCCCACTGTGTCTGTATGTCATGTGTGTGAGAGACT
ACCTCACGCATAATTTGATGACAGATTCGTACGTAGACCTCATGGTAGCT
TCAAATTATTGTACTGAGAACTCTGTGCGTGGGTCTTCACGTGCGAGGTT
GCCTCAGCGATTAGTCTTCACGCACGACCCAACGATCAACGACGCTCAAC
TCAACAACTCAACAATTCAACAACAGATGCAGCATGCGAGTGGTATATCT
CGGACTTTGCGATGATCTGTCGCCAAGCCGCAACTGGTTGGATGGTGAGT
GCTCCCGCTACTGCCACAGACAACCACCCTTACCCCGTGCTTAAGTTACC
TTACAAGCCCCTTTTCGTACCCTAACCCTAGCTTGACGTCATCCAACCTT
GCTTGATGTATTGACGATACATTACAGGTGCTGTTTCTTTAAGTAGTGGG
TATCTTGTGCTTTTACCGACGGATGGGAAAGTTGCCGTTGTGCGGGTACC
ATTGGCGCAAGACCTGAGGGACGACTCACCTCGAGTCATGCTTCTAAACT
CTCTCGAAACTATAGAAGAGGGGGGAACTTTTGATCATGGAGCTGTTTGT
CCGAGCGGAAGCCGGATCGCGCTCGCCTACACGTGCAGCTCCCTGCACAT
CCACAACATTTTAAGCAGTGCGGGGGACAGTGAGAAAATCCAGCATATCT
CCCGATCGATAAGGTGTGTGCCTACCAGAACGAGCTCGTCTATTTCTGTT
GCATTATTCCAAATTTTCTACATAACACGCACACACCACAGAAAAAGCCC
CGATCCGATACGCAGATCAAAGAGGCTTCGACACGTGGCTTGGCAGGTGC
TTCCTTGTGGTTACGTCGTCGGCGCGGCGAATGCCAAGCATTTGACCATA
TACGATGCTTGGGAGTCGATAGATTCAAATCTTCGTGTTCTTGGTGGGAT
CAAGTCTTCAGAGCCCATTGATGGGTGGACATGGCTGAGTAACCGGGACA
GAATCGCTCTCTTGGCGGGAAACAAAGTGAGCATTCACGATCGAGTTTTG
TCCAAGGATTATGAGCAAAATCCATCATTCTTGCCTTCTCCGTCGCTGGG
AGCGGCTGTGGAGAAGTGGAAGCGGCTGGTGCCTTTGCCCGGGGGGGACG
CTGGAACAGCCTTTGTCGCTGTCCTGACTGAGCCATGCTTCTTGCAGGCT
CAAATACGCGCGAAGACCGAGGATGGTCACGGGTTGAACGAGACACTGGA
GGCACTCCGAACCGTGCAGGTCCAGCAGAAGACGAAGAATAAATCAAAGA
GAAAAGGAATGGAGAATCAGGGGGGCATTATTAAGGATGAGAGGGTCGAG
GAAGAAGAGACAGCGGACAAGCAGGCAGATAGCGGTAGCAGCGGCAGCGG
CAGTGACGCTGTTGTTGATCTGCGCGGTAGGATTGGTGGAGGTGGAGGTG
TCTCCGCTTCCTTTTCGTTGTTGAATATCCTCACGGGAGGCATCACACGT
CCTCCACGATGCACTGGACTATTCTTACCACCGCCACCCCCCGCGCAACA
GAGCAATGATGATGGAGCCCAGCTCCTGCTTCTAAAAGTACCGGTAGCGT
CATCCTCAGGGCCATCAGACGAGCAAGAGGTGCTGCGTTCCATTCCGGTG
GGGAGAAATATCTGCCCCATGCCAGGACTCCTTGCCGCCTCGGAGGCCCA
CGTCGCGATAGGTGACCCATGGTCGTCCACCATACTAATTCACCGCCTGT
CCGATGACTTTCCTGCTGTGACATCGACGAAAGAGAAGCAATTAAAGATG
CCAGCTGGGTTGGTCCCCCGTGGTTTACGCTTTTTCGGTGATCATACCCT
CGTTTGTCTTGCTGTTGAGGCGGCAGGAGCTAAGGGCGGAGGCAGCGGAA
GAGGAAGAAAAGAAGGAGGAGGAGGAAAAGGAGGAAAAGGAGGAGACGGA
GGAGAAGGAGGAAAAAGAGGAGGAGGACGAGGAACATTGCAAGGGTGTAC
TAGTGCGAGCTTGATTGAGTTCCTCTTGGAGGATGAAGAGCCGCCAGAGG
AATCAAAAGGGCTCTCGACCATCGTGTTGAACGTTGTTGGTCTTTCAGCA
GGTGTGAGCCAACAACAACAAGAAGAGCAGCAGCAGCAGCAGCAGCAGCA
CGATGTTATGCCCTTTCTCCGCAGCTTTCGGGATGAGATGAGAGAGCGAT
TTGACGAGCTGGAAAGCAAAATGACGACGCTGGAACGAAGGCTCGGCGAA
TTGTGAGTGAAGAAAGTGTTATCTTTCTGGACCACCAAGGTGTTGATTTC
GGTGTGAGTGAATCAACAATGTGCATGAACATGAACATAATGAAATAGAT
TAATGGGCGTTTGCGCGCGGTAA
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Coding sequence (CDS) from alignment at chr8:543067..546189+

>NO08G01760.1 ID=NO08G01760.1|Name=NO08G01760.1|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at chr8:543067..546189+ (Nannochloropsis oceanica)
ATGCGAGTGGTATATCTCGGACTTTGCGATGATCTGTCGCCAAGCCGCAA
CTGGTTGGATGGTGCTGTTTCTTTAAGTAGTGGGTATCTTGTGCTTTTAC
CGACGGATGGGAAAGTTGCCGTTGTGCGGGTACCATTGGCGCAAGACCTG
AGGGACGACTCACCTCGAGTCATGCTTCTAAACTCTCTCGAAACTATAGA
AGAGGGGGGAACTTTTGATCATGGAGCTGTTTGTCCGAGCGGAAGCCGGA
TCGCGCTCGCCTACACGTGCAGCTCCCTGCACATCCACAACATTTTAAGC
AGTGCGGGGGACAGTGAGAAAATCCAGCATATCTCCCGATCGATAAGAAA
AAGCCCCGATCCGATACGCAGATCAAAGAGGCTTCGACACGTGGCTTGGC
AGGTGCTTCCTTGTGGTTACGTCGTCGGCGCGGCGAATGCCAAGCATTTG
ACCATATACGATGCTTGGGAGTCGATAGATTCAAATCTTCGTGTTCTTGG
TGGGATCAAGTCTTCAGAGCCCATTGATGGGTGGACATGGCTGAGTAACC
GGGACAGAATCGCTCTCTTGGCGGGAAACAAAGTGAGCATTCACGATCGA
GTTTTGTCCAAGGATTATGAGCAAAATCCATCATTCTTGCCTTCTCCGTC
GCTGGGAGCGGCTGTGGAGAAGTGGAAGCGGCTGGTGCCTTTGCCCGGGG
GGGACGCTGGAACAGCCTTTGTCGCTGTCCTGACTGAGCCATGCTTCTTG
CAGGCTCAAATACGCGCGAAGACCGAGGATGGTCACGGGTTGAACGAGAC
ACTGGAGGCACTCCGAACCGTGCAGGTCCAGCAGAAGACGAAGAATAAAT
CAAAGAGAAAAGGAATGGAGAATCAGGGGGGCATTATTAAGGATGAGAGG
GTCGAGGAAGAAGAGACAGCGGACAAGCAGGCAGATAGCGGTAGCAGCGG
CAGCGGCAGTGACGCTGTTGTTGATCTGCGCGGTAGGATTGGTGGAGGTG
GAGGTGTCTCCGCTTCCTTTTCGTTGTTGAATATCCTCACGGGAGGCATC
ACACGTCCTCCACGATGCACTGGACTATTCTTACCACCGCCACCCCCCGC
GCAACAGAGCAATGATGATGGAGCCCAGCTCCTGCTTCTAAAAGTACCGG
TAGCGTCATCCTCAGGGCCATCAGACGAGCAAGAGGTGCTGCGTTCCATT
CCGGTGGGGAGAAATATCTGCCCCATGCCAGGACTCCTTGCCGCCTCGGA
GGCCCACGTCGCGATAGGTGACCCATGGTCGTCCACCATACTAATTCACC
GCCTGTCCGATGACTTTCCTGCTGTGACATCGACGAAAGAGAAGCAATTA
AAGATGCCAGCTGGGTTGGTCCCCCGTGGTTTACGCTTTTTCGGTGATCA
TACCCTCGTTTGTCTTGCTGTTGAGGCGGCAGGAGCTAAGGGCGGAGGCA
GCGGAAGAGGAAGAAAAGAAGGAGGAGGAGGAAAAGGAGGAAAAGGAGGA
GACGGAGGAGAAGGAGGAAAAAGAGGAGGAGGACGAGGAACATTGCAAGG
GTGTACTAGTGCGAGCTTGATTGAGTTCCTCTTGGAGGATGAAGAGCCGC
CAGAGGAATCAAAAGGGCTCTCGACCATCGTGTTGAACGTTGTTGGTCTT
TCAGCAGGTGTGAGCCAACAACAACAAGAAGAGCAGCAGCAGCAGCAGCA
GCAGCACGATGTTATGCCCTTTCTCCGCAGCTTTCGGGATGAGATGAGAG
AGCGATTTGACGAGCTGGAAAGCAAAATGACGACGCTGGAACGAAGGCTC
GGCGAATTGTGA
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Synonyms
Publications