NO05G04970, NO05G04970 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G04970
Unique Name	NO05G04970
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3160
Alignment location	chr5:1292132..1295291 -

Link to JBrowse

Properties


Property Name	Value
Description	Nuclear acid binding protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1292132..1295291 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom

Homology

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BLAST of NO05G04970 vs. NCBI_GenBank
Match: EWM27900.1 (nuclear acid binding protein [Nannochloropsis gaditana])

HSP 1 Score: 432.2 bits (1110), Expect = 2.600e-117
Identity = 267/415 (64.34%), Postives = 288/415 (69.40%), Query Frame = 0

Query:   41 GGTEEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYATAGPGAGPPEYYPPGMHLHXXXXXXXXXXXXXXXXXXXXXXXGGYFAPGPMPY 456
            GGTEEPCKTLWVGDIQPSWDEAYVGS+FANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEF++ EIAEKVLETCNGNAI GT FRFRLNWGAGGKR+E+ PEFSIFVGDLAP+VTDQMLQ +F EK+PSTLGAKVVMDPVSGMSKGFGFVRF +EEEK++AL++M       R IRVAP                  X      HA P+        H H+ML G                                   FVGGID GVTEDVLREAFSG+GDI+YVKIP GRGCGFVQYV R SAE AIAKMQG DV+GCKVRLSWG            XXXXXXXXXXXXXX       YAT GPGAG   YYPP  HLH        XXXXXXXXXXXXX  G ++APGP+PY
Sbjct:    2 GGTEEPCKTLWVGDIQPSWDEAYVGSVFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFATAEIAEKVLETCNGNAIAGTHFRFRLNWGAGGKRMETAPEFSIFVGDLAPEVTDQMLQDIFLEKFPSTLGAKVVMDPVSGMSKGFGFVRFKNEEEKEEALSTMXXXXXXGRAIRVAP---XXXXXXXXXXXXXXXXXXXXXXHASPY-----PGMHPHMMLGGD-------------------------GEDPHNTTVFVGGIDAGVTEDVLREAFSGYGDIIYVKIPPGRGCGFVQYVNRTSAETAIAKMQGADVRGCKVRLSWG--RSSPARAEGRXXXXXXXXXXXXXXMAGYPAMYATVGPGAGGGGYYPPTSHLH----PPHPXXXXXXXXXXXXXQSGYHYAPGPIPY 377

[Close]

BLAST of NO05G04970 vs. NCBI_GenBank
Match: POM68113.1 (Nucleolin [Phytophthora palmivora var. palmivora])

HSP 1 Score: 267.3 bits (682), Expect = 1.100e-67
Identity = 146/324 (45.06%), Postives = 182/324 (56.17%), Query Frame = 0

Query:   44 EEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            E  CKTLW+GDIQ  WDE ++ SLFA+      +   VKLIRDK TG+PAGYGF+EF +   A++VLE  NG  I  T  RFR+NWGAGG+R+E+  + SIFVGDLAPDVTD++L   F  ++ +  GAKVVMDPV+ MSKGFGFVRFG +EE DQAL +M GV C SR +RV+ AT +      T  G             +P  +                                                 FVGG+D   TED LR  F   G+IV VK+P GRGCGFVQY  + +AE AIA+M G  + G KVR +WG
Sbjct:    2 ETECKTLWMGDIQMHWDETFIASLFASA----VEQPVVKLIRDKVTGYPAGYGFLEFPTQRGAQQVLEAYNGQLIPNTMHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVTDELLLTTFSARFTTVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGVYCSSRPMRVSVATERNKTRQQTAFG-------------MPEEE-------------------------------------------GTNTTVFVGGLDPSTTEDELRARFGALGEIVSVKVPPGRGCGFVQYTTKEAAEVAIAQMNGTVISGVKVRCAWG 265

[Close]

BLAST of NO05G04970 vs. NCBI_GenBank
Match: CBJ29399.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 266.2 bits (679), Expect = 2.500e-67
Identity = 148/332 (44.58%), Postives = 183/332 (55.12%), Query Frame = 0

Query:   36 DSREDGGTEEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            D +         KTLW+GD+QP W E YV SLF++     G  +EVKLIRD+H G  AGYGF++F + E A+ VL++ NG  IEGT  R+RLNWGAGGKR+E  PE+S+FVGDL+P+VTD  L+A F  KY S LGAKVV +P++G SK FGF+RFGDE+E+D+AL +M G  C  R IRVAPAT + +    TG                        H  D                                         FVGGI+  VTE VLR+ F+  G+I  V  P GRGC FV +  RASAE  I  MQG  V G  VRLSWG
Sbjct:    4 DQQYQDENRSAAKTLWLGDVQPDWTEEYVESLFSSI---VGQELEVKLIRDRHRGIVAGYGFIDFRNHETAQLVLDSLNGKPIEGTSLRYRLNWGAGGKRIEQAPEYSVFVGDLSPEVTDAELKATFLGKYTSVLGAKVVTNPMTGSSKSFGFIRFGDEQERDEALTAMNGAECCGRPIRVAPATKRTSVQGQTGA-----------------------HATD-----------------------------------PSNTTVFVGGINDSVTEKVLRDTFNSAGEIQTVTTPPGRGCAFVTFAHRASAEHVINNMQGTTVCGSCVRLSWG 274

[Close]

BLAST of NO05G04970 vs. NCBI_GenBank
Match: XP_008898353.1 (hypothetical protein PPTG_06213 [Phytophthora parasitica INRA-310] >ETI31551.1 hypothetical protein F443_21471 [Phytophthora parasitica P1569] >ETK71944.1 hypothetical protein L915_20875 [Phytophthora parasitica] >ETL25372.1 hypothetical protein L916_20759 [Phytophthora parasitica] >ETL78598.1 hypothetical protein L917_20608 [Phytophthora parasitica] >ETM31858.1 hypothetical protein L914_20628 [Phytophthora parasitica] >ETN15956.1 hypothetical protein PPTG_06213 [Phytophthora parasitica INRA-310] >ETO60272.1 hypothetical protein F444_21489 [Phytophthora parasitica P1976] >ETP01363.1 hypothetical protein F441_21358 [Phytophthora parasitica CJ01A1] >ETP29527.1 hypothetical protein F442_21307 [Phytophthora parasitica P10297])

HSP 1 Score: 265.8 bits (678), Expect = 3.200e-67
Identity = 146/324 (45.06%), Postives = 182/324 (56.17%), Query Frame = 0

Query:   44 EEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            E  CKTLW+GDIQ  WDE ++ SLF  T   E  V  VKLIRDK TG+PAGYGF+EF +   A++VL+  NG  I  T  RFR+NWGAGG+R+E+  + SIFVGDLAPDVTD++L   F  ++ +  GAKVVMDPV+ MSKGFGFVRFG +EE DQAL +M GV C SR +RV+ AT +  +    G G+G                                                                 FVGG+D   TED LR  F   G+IV VK+P GRGCGFVQY  + +AE AI++M G  + G KVR +WG
Sbjct:    2 ETECKTLWMGDIQMHWDETFIASLF--TSAAEQPV--VKLIRDKVTGYPAGYGFLEFPTPRGAQQVLDAYNGQLIPNTMHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVTDELLLNTFSARFTTVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGVYCSSRPMRVSVATERNKSRQQVGFGMG--------------------------------------------------------EEEGTNTTVFVGGLDPSTTEDELRARFGALGEIVSVKVPPGRGCGFVQYTSKEAAEVAISQMNGTVISGVKVRCAWG 265

[Close]

BLAST of NO05G04970 vs. NCBI_GenBank
Match: XP_008898352.1 (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETI31552.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK71945.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL25373.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL78599.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM31859.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETN15957.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETO60273.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP01364.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP29528.1 hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 265.8 bits (678), Expect = 3.200e-67
Identity = 146/324 (45.06%), Postives = 182/324 (56.17%), Query Frame = 0

Query:   44 EEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            E  CKTLW+GDIQ  WDE ++ SLF  T   E  V  VKLIRDK TG+PAGYGF+EF +   A++VL+  NG  I  T  RFR+NWGAGG+R+E+  + SIFVGDLAPDVTD++L   F  ++ +  GAKVVMDPV+ MSKGFGFVRFG +EE DQAL +M GV C SR +RV+ AT +  +    G G+G                                                                 FVGG+D   TED LR  F   G+IV VK+P GRGCGFVQY  + +AE AI++M G  + G KVR +WG
Sbjct:    2 ETECKTLWMGDIQMHWDETFIASLF--TSAAEQPV--VKLIRDKVTGYPAGYGFLEFPTPRGAQQVLDAYNGQLIPNTMHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVTDELLLNTFSARFTTVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGVYCSSRPMRVSVATERNKSRQQVGFGMG--------------------------------------------------------EEEGTNTTVFVGGLDPSTTEDELRARFGALGEIVSVKVPPGRGCGFVQYTSKEAAEVAISQMNGTVISGVKVRCAWG 265

[Close]

BLAST of NO05G04970 vs. NCBI_GenBank
Match: KUF83643.1 (Polyadenylate-binding protein RBP45A [Phytophthora nicotianae])

HSP 1 Score: 265.8 bits (678), Expect = 3.200e-67
Identity = 146/324 (45.06%), Postives = 182/324 (56.17%), Query Frame = 0

Query:   44 EEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            E  CKTLW+GDIQ  WDE ++ SLF  T   E  V  VKLIRDK TG+PAGYGF+EF +   A++VL+  NG  I  T  RFR+NWGAGG+R+E+  + SIFVGDLAPDVTD++L   F  ++ +  GAKVVMDPV+ MSKGFGFVRFG +EE DQAL +M GV C SR +RV+ AT +  +    G G+G                                                                 FVGG+D   TED LR  F   G+IV VK+P GRGCGFVQY  + +AE AI++M G  + G KVR +WG
Sbjct:    2 ETECKTLWMGDIQMHWDETFIASLF--TSAAEQPV--VKLIRDKVTGYPAGYGFLEFPTPRGAQQVLDAYNGQLIPNTMHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVTDELLLNTFSARFTTVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGVYCSSRPMRVSVATERNKSRQQVGFGMG--------------------------------------------------------EEEGTNTTVFVGGLDPSTTEDELRARFGALGEIVSVKVPPGRGCGFVQYTSKEAAEVAISQMNGTVISGVKVRCAWG 265

[Close]

BLAST of NO05G04970 vs. NCBI_GenBank
Match: XP_024572203.1 (nuclear acid binding [Plasmopara halstedii] >CEG35834.1 nuclear acid binding [Plasmopara halstedii])

HSP 1 Score: 265.0 bits (676), Expect = 5.500e-67
Identity = 144/324 (44.44%), Postives = 183/324 (56.48%), Query Frame = 0

Query:   44 EEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            E  CKTLW+GDIQ  WDE ++ SLFA+      +   VKLIRDK TG+PAGYGF+EF +   A++VLET NG  I  T  RFR+NWGAGG+R+E+  + SIFVGDLAPDV D++L + F  ++ +  GAKVVMDP++ MSKGFGFVRFG +EE DQAL +M GV C SR +RV+ AT +  A    G  +                                                                  FVGG+D G +E+ LR  F   G+IV VK+P GRGCGFVQY  + +AEAAI++M G  V G KVR +WG
Sbjct:    2 ETECKTLWMGDIQMHWDETFIVSLFASA----AEQPIVKLIRDKVTGYPAGYGFLEFPTQRGAQQVLETFNGQLIPNTLHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVADELLLSTFSARFTTVRGAKVVMDPITRMSKGFGFVRFGSKEEADQALQTMNGVFCSSRPMRVSVATERNKARQQLGFSMS--------------------------------------------------------EEDGANTTVFVGGLDPGTSEEELRTRFGALGEIVSVKVPPGRGCGFVQYTTKEAAEAAISQMNGSVVGGVKVRCAWG 265

[Close]

BLAST of NO05G04970 vs. NCBI_GenBank
Match: XP_012208574.1 (hypothetical protein SPRG_13902 [Saprolegnia parasitica CBS 223.65] >KDO20690.1 hypothetical protein SPRG_13902 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 262.3 bits (669), Expect = 3.500e-66
Identity = 164/325 (50.46%), Postives = 193/325 (59.38%), Query Frame = 0

Query:   43 TEEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            TE  CKTLW+GD+Q +WDEAYV SLF       G +  VKLIRDK TG+PAGYGF+EF S + A  VL T NG  I  TP RFRLNWGAGGKRLES+ ++S+FVGDLA DVTD +L A F  KY S  GAKVV+D +S +SKGFGFVRFG + E DQAL  M G  C  R +RV+ AT +                               HHP                          XXXXXXXXXXXXXXX  FVGG+D  +TED LR+ FS  G ++ +KIP GRGCGFVQY  RA AE AI +M G  +   K+R +WG
Sbjct:    2 TEPDCKTLWMGDVQINWDEAYVSSLFD----AFGHLPTVKLIRDKVTGYPAGYGFLEFDSPDSASDVLSTLNGQPIPNTPHRFRLNWGAGGKRLESMEDYSVFVGDLAGDVTDDVLFATFSAKYASVRGAKVVLDQMSRISKGFGFVRFGVKAEADQALQQMHGEPCLKRPMRVSAATDRPK-----------------------------HHP----------------------PTTPXXXXXXXXXXXXXXXTVFVGGLDASITEDDLRKQFSSIGPVLSIKIPLGRGCGFVQYSTRALAEQAIQEMSGVQLGASKLRCAWG 271

[Close]

BLAST of NO05G04970 vs. NCBI_GenBank
Match: XP_012211329.1 (hypothetical protein SPRG_16633 [Saprolegnia parasitica CBS 223.65] >KDO17960.1 hypothetical protein SPRG_16633 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 261.9 bits (668), Expect = 4.600e-66
Identity = 164/325 (50.46%), Postives = 193/325 (59.38%), Query Frame = 0

Query:   43 TEEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            TE  CKTLW+GD+Q +WDEAYV SLF       G +  VKLIRDK TG+PAGYGF+EF S E A +VL T NG  I  TP RFRLNWGAGGKRLES+ + S+FVGDLA DVTD +L + F  KY S  GAKVV+D +S +SKGFGFVRFG + E DQAL  M G  C  R +RV+ AT +                               HHP                          XXXXXXXXXXXXXXX  FVGG+D  +TED LR+ FS  G ++ +KIP GRGCGFVQY  RA AE AI +M G  +   K+R +WG
Sbjct:    2 TEPDCKTLWMGDVQINWDEAYVSSLFD----AFGHLPTVKLIRDKVTGYPAGYGFLEFDSPEAASEVLSTLNGQPIPNTPHRFRLNWGAGGKRLESMEDHSVFVGDLAGDVTDDVLFSTFSAKYASVRGAKVVLDQMSRISKGFGFVRFGVKAEADQALQQMHGELCLKRPMRVSAATDRPK-----------------------------HHP----------------------PTTPXXXXXXXXXXXXXXXTVFVGGLDASITEDDLRKQFSSIGSVLSIKIPLGRGCGFVQYSTRALAEQAIQEMSGVQLGASKLRCAWG 271

[Close]

BLAST of NO05G04970 vs. NCBI_GenBank
Match: CCA18326.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA18401.1 conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 261.2 bits (666), Expect = 7.900e-66
Identity = 145/328 (44.21%), Postives = 187/328 (57.01%), Query Frame = 0

Query:   47 CKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAK-KAAG------SVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            CKTLW+GDIQ +WDEAY+GSLFA+      +   +KLIRDK TG+PAGYGF+EF S + A+ VL T NG  +  T  RFRLNWGAGG+R+++V + SIFVGDLAP+V+D++L + F  ++ S  GAKVV+DPV+ M KGFGFVRFGD+ E DQAL +M GV C SR +RV+ AT + K  G      S T +G G                                                                 F+GG+D   TED LR  F   G+I+ VK+P GRGCGFVQYV + +A+ AI +M G  + G KVR +WG
Sbjct:    5 CKTLWMGDIQLNWDEAYIGSLFASA----VEQPSIKLIRDKVTGYPAGYGFLEFPSQQGAQAVLNTFNGQIVPNTIHRFRLNWGAGGRRIDTVEDHSIFVGDLAPEVSDELLLSTFSTRFSSVRGAKVVIDPVTRMPKGFGFVRFGDKGEADQALQTMNGVYCSSRPMRVSVATDRTKTRGIMPPPISYTVVGTGN------------------------------------------------------TEEEGANTTVFIGGLDPSTTEDDLRARFGVIGEIMSVKVPPGRGCGFVQYVTKDAADVAINQMNGALINGVKVRCAWG 274

The following BLAST results are available for this feature:

BLAST of NO05G04970 vs. NCBI_GenBank

BLAST of NO05G04970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM27900.1	2.600e-117	64.34	nuclear acid binding protein [Nannochloropsis gadi...	[more]
POM68113.1	1.100e-67	45.06	Nucleolin [Phytophthora palmivora var. palmivora]	[more]
CBJ29399.1	2.500e-67	44.58	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_008898353.1	3.200e-67	45.06	hypothetical protein PPTG_06213 [Phytophthora para...	[more]
XP_008898352.1	3.200e-67	45.06	hypothetical protein, variant 1 [Phytophthora para...	[more]
KUF83643.1	3.200e-67	45.06	Polyadenylate-binding protein RBP45A [Phytophthora...	[more]
XP_024572203.1	5.500e-67	44.44	nuclear acid binding [Plasmopara halstedii] >CEG35...	[more]
XP_012208574.1	3.500e-66	50.46	hypothetical protein SPRG_13902 [Saprolegnia paras...	[more]
XP_012211329.1	4.600e-66	50.46	hypothetical protein SPRG_16633 [Saprolegnia paras...	[more]
CCA18326.1	7.900e-66	44.21	conserved hypothetical protein [Albugo laibachii N...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL085	nonsL085	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR092	ncniR092	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR117	ngnoR117	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003351	NSK003351	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO05G04970.1	NO05G04970.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|664756	gene_3315	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100197g10	gene2662	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO05G04970.1	NO05G04970.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO05G04970 ID=NO05G04970|Name=NO05G04970|organism=Nannochloropsis oceanica|type=gene|length=3160bp
ATGCCGGGCAGAAGTTGCTTGACTTTGGATCTTCATATGCAGCGAGCCTC
TCCCTCTTCCTGCTTCTCCCCTTTGTTGCAGCGGACGCCCGAAAAGGAAG
CTTTGGACTCGCgtgctacgatttaacttgtcccttctcatgcacgcaca
caggtggcatttttttcgtgggccgcctcgacggttccccatgcaggtca
cttatgcgttgcaaacaacactttgcgttgccttcccgcgatagcgccgc
cgttcttaattcatttcccttccccttctcataaccatagGCGAAGATGG
GGGGACAGAGGAACCATGCAAAACCCTTTGGGTGGGAGACATCCAGgtac
gtctggagaggatacacaggataaggagcacgcggggttggatgctgctg
gttttgcccttggtaaattgcatgccccattacaagcggatcgaataggc
ctcggggcggccatcgcgtcgtcgcctcatcatatcacttgcggtgcagt
tgccatcctgatcttgcggccacatagaacgttgatgcacacacattctc
atgcacactccttacacacaatgtacacacagCCTTCATGGGACGAAGCA
TATGTGGGCAGCCTCTTCGCAAATACAGgtcagtatttacgagattattt
aggctccgttcagcaatagggtcggtttgaaaggacgggaaaaatcgaga
aagagagtgacggattaaaggaagagaagaagtcagattggagaagatct
tggaagccgagagaagtggaaccgcaggaggtgtgggtaatgttggaatg
ttcagatcttgattttaattccgtaaggccactagcagatgcattaggta
caacgaagacaatttctaattgagagattaaacaattgaatccagtcctc
accctcactctcctccgtctttttacaccctccctcttttcctccctccc
tccgttcgtccttcagGATTGGAAGAAGGAGACGTCGTGGAAGTCAAGTT
GATCCGCGACAAGCATACGGGTTTCCCGGCCGGATATGGCTTTGTGGAGT
TTTCTTCGCTTGAGATAGCCGAGAAGGTCCTCGAGACGTGCAATGGCAAT
GCAATAGgtaggagggaggcagggaggggggaagggaagaggaagggggg
gggaaaatactgctttggagagacttttgaagaggaaatgtaagaaaaca
caattgtacacatgtttgtaaaaggagagacttgtgaagaggaaatataa
aaaaacatgatcgtacatatgtttgtataagaataagattagaatctatg
cgcacctacttcctccctccctctctcactctctcactcaccctccctcc
ctccctccctcccctcctaatttccttccctccctcgcagAAGGGACGCC
TTTCCGTTTCCGGCTTAACTGGGGCGCGGGCGGAAAGCGCTTGGAATCCG
TGCCGGAGTTTTCCATTTTCGTCGGTGATTTAGCCCCGGACGTAACAGAT
CAGATGCTTCAAGCCGTTTTCGGGGAAAAATACCCCTCGACCTTGGGCGC
AAAGgtagggagggagggagggagggaaagaaagaagtagggagggaaag
aaagaagtagggagggaaagacagaagtagggaggggcagaaagaagtag
ggaggggcagaaagaagtagggagggaaagaactaagtagggagggaaag
aaagaagcagggaggggcaggtgtttaaaaattcttcgagatcgtttcct
catgaaggaataattaaatccatcgatcaactcaccatttccccccttct
tccctcccttcctccctccctcccttccagGTGGTGATGGACCCAGTGAG
CGGAATGAGCAAAGGCTTCGGCTTTGTGCGCTTCGGTGATGAAGAGGAGA
AGGATCAGGCCTTGGCCTCGATGACCGGCGTTTCGTGCGGCAGTCGTACC
ATCCGTGTCGCGCCAGCCACGGCCAAGAAAGCGGCGGGTAGTGTAACGGG
GATAGGAGTGGGAGGGGGAGGGATGATGGTGGGAGGAATGCATGCCCTCC
CACACCATCAGCATATGCTGCACCATCCACACGACCATGTGATGCTGAGT
GGGAGCCCGATGGCGGGGCCGGCGTCAAGCGCAGGAGGAGGAGCAGCAGC
CGGGGGAGGGGGTGGGGCAGCCGGAGGAGAGGGGGAGGACCCCAATAATA
CGACTGTCTTCGTGGGAGGTATCGATGGGGGGGTGACGGAGGACGTGTTA
AGAGAAGCCTTTTCCGGGTTTGGTGACATAGTGTACGTGAAAATCCCGCA
GGGACGGGGATGTGGATTCGTTCAGTACGTGCTTCGAGCCAGCGCCGAGG
CGGCGATCGCCAAAATGCAGGGCGGGGACGTGCAAGGTTGCAAAGTCCGT
TTGTCATGGGGCAGGTCGAGTCCAACACGGTCAGGGGGGAGGATGGGGGG
GATGGGAGTAGGGGAGGGAGGGATGGGGGTAGGGGGGCCAGCAGTTGGAT
ATCCGGGTATGTATGCGACCGCGGGACCGGGGGCGGGGCCACCAGAATAC
TACCCTCCAGGCATGCATTTGCACCACCACCATCAGCACCCGCAACATGC
ACCACACCCGCCGCACCCACACCACCACCACCAGCAGCAGCAGGGCGGCT
ATTTTGCGCCTGGCCCGATGCCCTATTCGCAGCCTGTATCCCCCTACCTC
CCCCCCTACCACCAGCACCAGCAGCAGCACCAGCAAGCGCCCCCTCACTA
CCACCAAGCTCAAGGAGGGGGAGGGGGAGGGGGCGGGGGCGGAAACCCTT
ATTCACACATGACCTATCCCTACCATCCCCACCATCTGCACCCTCATTCC
CTGCCTCCCCCGATACCAGGCCAAGAGAGAGGGGGCTACGGCGGGCCTTA
TTCATCTGGAGGGGAGAGCCCGGGAGGGAGGGAGGGAGGGAGGGAGATGG
GCAGTAGCACGGCATATTATTACGAGGGAGGGAGGGGAGGGGATCCCAAC
CTGCCGCACCGACCACCAGGAGGGGGTAGGAAGGGGGAGGGGTGGGAGGA
GGGATGAAGGGGCTGACAGCGCAGATGGAGGGCTTGGACATGGGAGGAGG
GGGGGGATGCAGGGAGATGGATATATAAAAGGAGGGATGCCACCAGGGAG
GGGAGGGCCG

protein sequence of NO05G04970.1

>NO05G04970.1-protein ID=NO05G04970.1-protein|Name=NO05G04970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MPGRSCLTLDLHMQRASPSSCFSPLLQRTPEKEALDSREDGGTEEPCKTL
WVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEF
SSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLA
PDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQA
LASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGGMMVGGMHALPHHQ
HMLHHPHDHVMLSGSPMAGPASSAGGGAAAGGGGGAAGGEGEDPNNTTVF
VGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIA
KMQGGDVQGCKVRLSWGRSSPTRSGGRMGGMGVGEGGMGVGGPAVGYPGM
YATAGPGAGPPEYYPPGMHLHHHHQHPQHAPHPPHPHHHHQQQQGGYFAP
GPMPYSQPVSPYLPPYHQHQQQHQQAPPHYHQAQGGGGGGGGGGNPYSHM
TYPYHPHHLHPHSLPPPIPGQERGGYGGPYSSGGESPGGREGGREMGSST
AYYYEGGRGGDPNLPHRPPGGGRKGEGWEEG*

Synonyms

Publications