NO05G04970.1, NO05G04970.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G04970.1
Unique Name	NO05G04970.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1849
Alignment location	chr5:1292132..1295291 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1292132..1295291 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G04970.1 vs.
Match: EWM27900.1 (nuclear acid binding protein [Nannochloropsis gaditana])

HSP 1 Score: 627.5 bits (1617), Expect = 4.200e-176
Identity = 366/545 (67.16%), Postives = 401/545 (73.58%), Query Frame = 0

Query:   41 GGTEEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGGMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAGPASSAGGGAAAGGGGGAAGGEGEDPNNTTVFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWGRSSPTRS-GGRMGGMGVG-EGGMGVGGPAVGYPGMYATAGPGAGPPEYYPPGMHLHHHHQHPQHAPHPPHPHHHHQQ----QQGGYFAPGPMPYSQPVSPYLPPYHQHQQQHQQAPPHYHQAQGGGGGGGGGGNPYSHMTYPYHPH-HLHPHSLPPPIPGQERGGY-GGPYSSGGESPGGREGGREMGSSTAYYYEGGRGGDP--NLPHRPPG-GGRK 575
            GGTEEPCKTLWVGDIQPSWDEAYVGS+FANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEF++ EIAEKVLETCNGNAI GT FRFRLNWGAGGKR+E+ PEFSIFVGDLAP+VTDQMLQ +F EK+PSTLGAKVVMDPVSGMSKGFGFVRF +EEEK++AL++MTGV CG R IRVAPATAKKAAGS  G+G+G G MM  GMHA P+        H H+ML                         GG+GEDP+NTTVFVGGID GVTEDVLREAFSG+GDI+YVKIP GRGCGFVQYV R SAE AIAKMQG DV+GCKVRLSWGRSSP R+ G RMGGMG G EGGMG+     GYP MYAT GPGAG   YYPP  HL        H PHP HP  H  Q    Q G ++APGP+PY    S YLPPYH  Q    QA   YH +Q     GGGG +PY+H++Y Y  H H  PHSLPP  PGQ+RGGY  G +S  G SP GREGGRE G  T YY      GDP  + PHRPPG GGRK
Sbjct:    2 GGTEEPCKTLWVGDIQPSWDEAYVGSVFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFATAEIAEKVLETCNGNAIAGTHFRFRLNWGAGGKRMETAPEFSIFVGDLAPEVTDQMLQDIFLEKFPSTLGAKVVMDPVSGMSKGFGFVRFKNEEEKEEALSTMTGVGCGGRAIRVAPATAKKAAGS-HGLGMGAGMMM--GMHASPYPGM-----HPHMML-------------------------GGDGEDPHNTTVFVGGIDAGVTEDVLREAFSGYGDIIYVKIPPGRGCGFVQYVNRTSAETAIAKMQGADVRGCKVRLSWGRSSPARAEGRRMGGMGGGMEGGMGM----AGYPAMYATVGPGAGGGGYYPPTSHL--------HPPHPQHPPTHSPQAPPTQSGYHYAPGPIPYPPSSSSYLPPYHPQQPSPAQAASLYHPSQ-----GGGGTHPYTHLSYSYQSHLHAPPHSLPPLAPGQDRGGYPPGGFSPQG-SPDGREGGRE-GLPTLYY------GDPGHSQPHRPPGPGGRK 488

The following BLAST results are available for this feature:

BLAST of NO05G04970.1 vs.

BLAST of NO05G04970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27900.1	4.200e-176	67.16	nuclear acid binding protein [Nannochloropsis gadi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G04970	NO05G04970	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G04970.1	NO05G04970.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G04970.1.cds1	NO05G04970.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G04970.1.cds2	NO05G04970.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G04970.1.cds3	NO05G04970.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G04970.1.cds4	NO05G04970.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G04970.1.cds5	NO05G04970.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G04970.1.cds6	NO05G04970.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1292132..1295291-
coding sequence from alignment at chr5:1292132..1295291-

mRNA sequence

>NO05G04970.1 ID=NO05G04970.1|Name=NO05G04970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1849bp
ATGCCGGGCAGAAGTTGCTTGACTTTGGATCTTCATATGCAGCGAGCCTC
TCCCTCTTCCTGCTTCTCCCCTTTGTTGCAGCGGACGCCCGAAAAGGAAG
CTTTGGACTCGCGCGAAGATGGGGGGACAGAGGAACCATGCAAAACCCTT
TGGGTGGGAGACATCCAGCCTTCATGGGACGAAGCATATGTGGGCAGCCT
CTTCGCAAATACAGGATTGGAAGAAGGAGACGTCGTGGAAGTCAAGTTGA
TCCGCGACAAGCATACGGGTTTCCCGGCCGGATATGGCTTTGTGGAGTTT
TCTTCGCTTGAGATAGCCGAGAAGGTCCTCGAGACGTGCAATGGCAATGC
AATAGAAGGGACGCCTTTCCGTTTCCGGCTTAACTGGGGCGCGGGCGGAA
AGCGCTTGGAATCCGTGCCGGAGTTTTCCATTTTCGTCGGTGATTTAGCC
CCGGACGTAACAGATCAGATGCTTCAAGCCGTTTTCGGGGAAAAATACCC
CTCGACCTTGGGCGCAAAGGTGGTGATGGACCCAGTGAGCGGAATGAGCA
AAGGCTTCGGCTTTGTGCGCTTCGGTGATGAAGAGGAGAAGGATCAGGCC
TTGGCCTCGATGACCGGCGTTTCGTGCGGCAGTCGTACCATCCGTGTCGC
GCCAGCCACGGCCAAGAAAGCGGCGGGTAGTGTAACGGGGATAGGAGTGG
GAGGGGGAGGGATGATGGTGGGAGGAATGCATGCCCTCCCACACCATCAG
CATATGCTGCACCATCCACACGACCATGTGATGCTGAGTGGGAGCCCGAT
GGCGGGGCCGGCGTCAAGCGCAGGAGGAGGAGCAGCAGCCGGGGGAGGGG
GTGGGGCAGCCGGAGGAGAGGGGGAGGACCCCAATAATACGACTGTCTTC
GTGGGAGGTATCGATGGGGGGGTGACGGAGGACGTGTTAAGAGAAGCCTT
TTCCGGGTTTGGTGACATAGTGTACGTGAAAATCCCGCAGGGACGGGGAT
GTGGATTCGTTCAGTACGTGCTTCGAGCCAGCGCCGAGGCGGCGATCGCC
AAAATGCAGGGCGGGGACGTGCAAGGTTGCAAAGTCCGTTTGTCATGGGG
CAGGTCGAGTCCAACACGGTCAGGGGGGAGGATGGGGGGGATGGGAGTAG
GGGAGGGAGGGATGGGGGTAGGGGGGCCAGCAGTTGGATATCCGGGTATG
TATGCGACCGCGGGACCGGGGGCGGGGCCACCAGAATACTACCCTCCAGG
CATGCATTTGCACCACCACCATCAGCACCCGCAACATGCACCACACCCGC
CGCACCCACACCACCACCACCAGCAGCAGCAGGGCGGCTATTTTGCGCCT
GGCCCGATGCCCTATTCGCAGCCTGTATCCCCCTACCTCCCCCCCTACCA
CCAGCACCAGCAGCAGCACCAGCAAGCGCCCCCTCACTACCACCAAGCTC
AAGGAGGGGGAGGGGGAGGGGGCGGGGGCGGAAACCCTTATTCACACATG
ACCTATCCCTACCATCCCCACCATCTGCACCCTCATTCCCTGCCTCCCCC
GATACCAGGCCAAGAGAGAGGGGGCTACGGCGGGCCTTATTCATCTGGAG
GGGAGAGCCCGGGAGGGAGGGAGGGAGGGAGGGAGATGGGCAGTAGCACG
GCATATTATTACGAGGGAGGGAGGGGAGGGGATCCCAACCTGCCGCACCG
ACCACCAGGAGGGGGTAGGAAGGGGGAGGGGTGGGAGGAGGGATGAAGGG
GCTGACAGCGCAGATGGAGGGCTTGGACATGGGAGGAGGGGGGGGATGCA
GGGAGATGGATATATAAAAGGAGGGATGCCACCAGGGAGGGGAGGGCCG

protein sequence of NO05G04970.1

>NO05G04970.1-protein ID=NO05G04970.1-protein|Name=NO05G04970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MPGRSCLTLDLHMQRASPSSCFSPLLQRTPEKEALDSREDGGTEEPCKTL
WVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEF
SSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLA
PDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQA
LASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGGMMVGGMHALPHHQ
HMLHHPHDHVMLSGSPMAGPASSAGGGAAAGGGGGAAGGEGEDPNNTTVF
VGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIA
KMQGGDVQGCKVRLSWGRSSPTRSGGRMGGMGVGEGGMGVGGPAVGYPGM
YATAGPGAGPPEYYPPGMHLHHHHQHPQHAPHPPHPHHHHQQQQGGYFAP
GPMPYSQPVSPYLPPYHQHQQQHQQAPPHYHQAQGGGGGGGGGGNPYSHM
TYPYHPHHLHPHSLPPPIPGQERGGYGGPYSSGGESPGGREGGREMGSST
AYYYEGGRGGDPNLPHRPPGGGRKGEGWEEG*

mRNA from alignment at chr5:1292132..1295291-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G04970.1 ID=NO05G04970.1|Name=NO05G04970.1|organism=Nannochloropsis oceanica|type=mRNA|length=3160bp|location=Sequence derived from alignment at chr5:1292132..1295291- (Nannochloropsis oceanica)
ATGCCGGGCAGAAGTTGCTTGACTTTGGATCTTCATATGCAGCGAGCCTC
TCCCTCTTCCTGCTTCTCCCCTTTGTTGCAGCGGACGCCCGAAAAGGAAG
CTTTGGACTCGCGTGCTACGATTTAACTTGTCCCTTCTCATGCACGCACA
CAGGTGGCATTTTTTTCGTGGGCCGCCTCGACGGTTCCCCATGCAGGTCA
CTTATGCGTTGCAAACAACACTTTGCGTTGCCTTCCCGCGATAGCGCCGC
CGTTCTTAATTCATTTCCCTTCCCCTTCTCATAACCATAGGCGAAGATGG
GGGGACAGAGGAACCATGCAAAACCCTTTGGGTGGGAGACATCCAGGTAC
GTCTGGAGAGGATACACAGGATAAGGAGCACGCGGGGTTGGATGCTGCTG
GTTTTGCCCTTGGTAAATTGCATGCCCCATTACAAGCGGATCGAATAGGC
CTCGGGGCGGCCATCGCGTCGTCGCCTCATCATATCACTTGCGGTGCAGT
TGCCATCCTGATCTTGCGGCCACATAGAACGTTGATGCACACACATTCTC
ATGCACACTCCTTACACACAATGTACACACAGCCTTCATGGGACGAAGCA
TATGTGGGCAGCCTCTTCGCAAATACAGGTCAGTATTTACGAGATTATTT
AGGCTCCGTTCAGCAATAGGGTCGGTTTGAAAGGACGGGAAAAATCGAGA
AAGAGAGTGACGGATTAAAGGAAGAGAAGAAGTCAGATTGGAGAAGATCT
TGGAAGCCGAGAGAAGTGGAACCGCAGGAGGTGTGGGTAATGTTGGAATG
TTCAGATCTTGATTTTAATTCCGTAAGGCCACTAGCAGATGCATTAGGTA
CAACGAAGACAATTTCTAATTGAGAGATTAAACAATTGAATCCAGTCCTC
ACCCTCACTCTCCTCCGTCTTTTTACACCCTCCCTCTTTTCCTCCCTCCC
TCCGTTCGTCCTTCAGGATTGGAAGAAGGAGACGTCGTGGAAGTCAAGTT
GATCCGCGACAAGCATACGGGTTTCCCGGCCGGATATGGCTTTGTGGAGT
TTTCTTCGCTTGAGATAGCCGAGAAGGTCCTCGAGACGTGCAATGGCAAT
GCAATAGGTAGGAGGGAGGCAGGGAGGGGGGAAGGGAAGAGGAAGGGGGG
GGGAAAATACTGCTTTGGAGAGACTTTTGAAGAGGAAATGTAAGAAAACA
CAATTGTACACATGTTTGTAAAAGGAGAGACTTGTGAAGAGGAAATATAA
AAAAACATGATCGTACATATGTTTGTATAAGAATAAGATTAGAATCTATG
CGCACCTACTTCCTCCCTCCCTCTCTCACTCTCTCACTCACCCTCCCTCC
CTCCCTCCCTCCCCTCCTAATTTCCTTCCCTCCCTCGCAGAAGGGACGCC
TTTCCGTTTCCGGCTTAACTGGGGCGCGGGCGGAAAGCGCTTGGAATCCG
TGCCGGAGTTTTCCATTTTCGTCGGTGATTTAGCCCCGGACGTAACAGAT
CAGATGCTTCAAGCCGTTTTCGGGGAAAAATACCCCTCGACCTTGGGCGC
AAAGGTAGGGAGGGAGGGAGGGAGGGAAAGAAAGAAGTAGGGAGGGAAAG
AAAGAAGTAGGGAGGGAAAGACAGAAGTAGGGAGGGGCAGAAAGAAGTAG
GGAGGGGCAGAAAGAAGTAGGGAGGGAAAGAACTAAGTAGGGAGGGAAAG
AAAGAAGCAGGGAGGGGCAGGTGTTTAAAAATTCTTCGAGATCGTTTCCT
CATGAAGGAATAATTAAATCCATCGATCAACTCACCATTTCCCCCCTTCT
TCCCTCCCTTCCTCCCTCCCTCCCTTCCAGGTGGTGATGGACCCAGTGAG
CGGAATGAGCAAAGGCTTCGGCTTTGTGCGCTTCGGTGATGAAGAGGAGA
AGGATCAGGCCTTGGCCTCGATGACCGGCGTTTCGTGCGGCAGTCGTACC
ATCCGTGTCGCGCCAGCCACGGCCAAGAAAGCGGCGGGTAGTGTAACGGG
GATAGGAGTGGGAGGGGGAGGGATGATGGTGGGAGGAATGCATGCCCTCC
CACACCATCAGCATATGCTGCACCATCCACACGACCATGTGATGCTGAGT
GGGAGCCCGATGGCGGGGCCGGCGTCAAGCGCAGGAGGAGGAGCAGCAGC
CGGGGGAGGGGGTGGGGCAGCCGGAGGAGAGGGGGAGGACCCCAATAATA
CGACTGTCTTCGTGGGAGGTATCGATGGGGGGGTGACGGAGGACGTGTTA
AGAGAAGCCTTTTCCGGGTTTGGTGACATAGTGTACGTGAAAATCCCGCA
GGGACGGGGATGTGGATTCGTTCAGTACGTGCTTCGAGCCAGCGCCGAGG
CGGCGATCGCCAAAATGCAGGGCGGGGACGTGCAAGGTTGCAAAGTCCGT
TTGTCATGGGGCAGGTCGAGTCCAACACGGTCAGGGGGGAGGATGGGGGG
GATGGGAGTAGGGGAGGGAGGGATGGGGGTAGGGGGGCCAGCAGTTGGAT
ATCCGGGTATGTATGCGACCGCGGGACCGGGGGCGGGGCCACCAGAATAC
TACCCTCCAGGCATGCATTTGCACCACCACCATCAGCACCCGCAACATGC
ACCACACCCGCCGCACCCACACCACCACCACCAGCAGCAGCAGGGCGGCT
ATTTTGCGCCTGGCCCGATGCCCTATTCGCAGCCTGTATCCCCCTACCTC
CCCCCCTACCACCAGCACCAGCAGCAGCACCAGCAAGCGCCCCCTCACTA
CCACCAAGCTCAAGGAGGGGGAGGGGGAGGGGGCGGGGGCGGAAACCCTT
ATTCACACATGACCTATCCCTACCATCCCCACCATCTGCACCCTCATTCC
CTGCCTCCCCCGATACCAGGCCAAGAGAGAGGGGGCTACGGCGGGCCTTA
TTCATCTGGAGGGGAGAGCCCGGGAGGGAGGGAGGGAGGGAGGGAGATGG
GCAGTAGCACGGCATATTATTACGAGGGAGGGAGGGGAGGGGATCCCAAC
CTGCCGCACCGACCACCAGGAGGGGGTAGGAAGGGGGAGGGGTGGGAGGA
GGGATGAAGGGGCTGACAGCGCAGATGGAGGGCTTGGACATGGGAGGAGG
GGGGGGATGCAGGGAGATGGATATATAAAAGGAGGGATGCCACCAGGGAG
GGGAGGGCCG

Coding sequence (CDS) from alignment at chr5:1292132..1295291-

>NO05G04970.1 ID=NO05G04970.1|Name=NO05G04970.1|organism=Nannochloropsis oceanica|type=CDS|length=1746bp|location=Sequence derived from alignment at chr5:1292132..1295291- (Nannochloropsis oceanica)
ATGCCGGGCAGAAGTTGCTTGACTTTGGATCTTCATATGCAGCGAGCCTC
TCCCTCTTCCTGCTTCTCCCCTTTGTTGCAGCGGACGCCCGAAAAGGAAG
CTTTGGACTCGCGCGAAGATGGGGGGACAGAGGAACCATGCAAAACCCTT
TGGGTGGGAGACATCCAGCCTTCATGGGACGAAGCATATGTGGGCAGCCT
CTTCGCAAATACAGGATTGGAAGAAGGAGACGTCGTGGAAGTCAAGTTGA
TCCGCGACAAGCATACGGGTTTCCCGGCCGGATATGGCTTTGTGGAGTTT
TCTTCGCTTGAGATAGCCGAGAAGGTCCTCGAGACGTGCAATGGCAATGC
AATAGAAGGGACGCCTTTCCGTTTCCGGCTTAACTGGGGCGCGGGCGGAA
AGCGCTTGGAATCCGTGCCGGAGTTTTCCATTTTCGTCGGTGATTTAGCC
CCGGACGTAACAGATCAGATGCTTCAAGCCGTTTTCGGGGAAAAATACCC
CTCGACCTTGGGCGCAAAGGTGGTGATGGACCCAGTGAGCGGAATGAGCA
AAGGCTTCGGCTTTGTGCGCTTCGGTGATGAAGAGGAGAAGGATCAGGCC
TTGGCCTCGATGACCGGCGTTTCGTGCGGCAGTCGTACCATCCGTGTCGC
GCCAGCCACGGCCAAGAAAGCGGCGGGTAGTGTAACGGGGATAGGAGTGG
GAGGGGGAGGGATGATGGTGGGAGGAATGCATGCCCTCCCACACCATCAG
CATATGCTGCACCATCCACACGACCATGTGATGCTGAGTGGGAGCCCGAT
GGCGGGGCCGGCGTCAAGCGCAGGAGGAGGAGCAGCAGCCGGGGGAGGGG
GTGGGGCAGCCGGAGGAGAGGGGGAGGACCCCAATAATACGACTGTCTTC
GTGGGAGGTATCGATGGGGGGGTGACGGAGGACGTGTTAAGAGAAGCCTT
TTCCGGGTTTGGTGACATAGTGTACGTGAAAATCCCGCAGGGACGGGGAT
GTGGATTCGTTCAGTACGTGCTTCGAGCCAGCGCCGAGGCGGCGATCGCC
AAAATGCAGGGCGGGGACGTGCAAGGTTGCAAAGTCCGTTTGTCATGGGG
CAGGTCGAGTCCAACACGGTCAGGGGGGAGGATGGGGGGGATGGGAGTAG
GGGAGGGAGGGATGGGGGTAGGGGGGCCAGCAGTTGGATATCCGGGTATG
TATGCGACCGCGGGACCGGGGGCGGGGCCACCAGAATACTACCCTCCAGG
CATGCATTTGCACCACCACCATCAGCACCCGCAACATGCACCACACCCGC
CGCACCCACACCACCACCACCAGCAGCAGCAGGGCGGCTATTTTGCGCCT
GGCCCGATGCCCTATTCGCAGCCTGTATCCCCCTACCTCCCCCCCTACCA
CCAGCACCAGCAGCAGCACCAGCAAGCGCCCCCTCACTACCACCAAGCTC
AAGGAGGGGGAGGGGGAGGGGGCGGGGGCGGAAACCCTTATTCACACATG
ACCTATCCCTACCATCCCCACCATCTGCACCCTCATTCCCTGCCTCCCCC
GATACCAGGCCAAGAGAGAGGGGGCTACGGCGGGCCTTATTCATCTGGAG
GGGAGAGCCCGGGAGGGAGGGAGGGAGGGAGGGAGATGGGCAGTAGCACG
GCATATTATTACGAGGGAGGGAGGGGAGGGGATCCCAACCTGCCGCACCG
ACCACCAGGAGGGGGTAGGAAGGGGGAGGGGTGGGAGGAGGGATGA

Synonyms

Publications