NO05G03080, NO05G03080 (gene) Nannochloropsis oceanica

Overview
NameNO05G03080
Unique NameNO05G03080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2081
Alignment locationchr5:796736..798816 +

Link to JBrowse

Properties
Property NameValue
DescriptionDna-directed rna polymerases and iii subunit rpabc3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:796736..798816 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR005570RNA_pol_Rpb8
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
BLAST of NO05G03080 vs. NCBI_GenBank
Match: EWM28083.1 (dna-directed rna polymerases and iii subunit rpabc3 [Nannochloropsis gaditana])

HSP 1 Score: 276.2 bits (705), Expect = 6.400e-71
Identity = 136/158 (86.08%), Postives = 144/158 (91.14%), Query Frame = 0
Query:    1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGV-AGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRKTKTNRAS 158
            MSHNLFDDTFVIT LNPHKKRFARVDRLVG+STLFEMDL+LDINSEIY V+Q DEIALML HTPYSDGK DPKEYQHDMSS LMDQY+YVTYGKVFKIES  S G   GG+KE KVAIMISFGGLLMKLSGDQKHVARISIDSPIYCF+RKTKT+R +
Sbjct:   64 MSHNLFDDTFVITGLNPHKKRFARVDRLVGRSTLFEMDLILDINSEIYQVRQDDEIALMLAHTPYSDGKLDPKEYQHDMSSALMDQYEYVTYGKVFKIESAPSAGANVGGSKESKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFIRKTKTSRTT 221          
BLAST of NO05G03080 vs. NCBI_GenBank
Match: CCI42344.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 130.2 bits (326), Expect = 5.700e-27
Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = 0
Query:    1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151
            M+  LF+D F +  LNP  K+F +V R+VGK   +E++L LDINSE++ +K+ D+    L  T   +GKPD   Y     +TL+D+YDY  YGK+F+ E        GGN    VAI  SFGGLLM+L G+Q+H+  +  DS IYC +RK
Sbjct:   37 MATELFEDIFEVRQLNPEGKKFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFQYEH------EGGN---NVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRK 177          
BLAST of NO05G03080 vs. NCBI_GenBank
Match: CCI42345.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 130.2 bits (326), Expect = 5.700e-27
Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = 0
Query:    1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151
            M+  LF+D F +  LNP  K+F +V R+VGK   +E++L LDINSE++ +K+ D+    L  T   +GKPD   Y     +TL+D+YDY  YGK+F+ E        GGN    VAI  SFGGLLM+L G+Q+H+  +  DS IYC +RK
Sbjct:    1 MATELFEDIFEVRQLNPEGKKFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFQYEH------EGGN---NVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRK 141          
BLAST of NO05G03080 vs. NCBI_GenBank
Match: CCA16787.1 (DNAdirected RNA polymerase I putative [Albugo laibachii Nc14])

HSP 1 Score: 127.5 bits (319), Expect = 3.700e-26
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 0
Query:    1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151
            M+  LF+D F +  LNP  K F +V R+VGK   +E++L LDINSE++ +K+ D+    L  T   +GKPD   Y     +TL+D+YDY  YGK+F  E        GGN    VAI  SFGGLLM+L G+Q+H+  +  DS +YC +RK
Sbjct:   84 MATELFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEH------EGGN---NVAIYASFGGLLMRLRGEQRHLHLVHNDSRVYCLLRK 224          
BLAST of NO05G03080 vs. NCBI_GenBank
Match: CCA16788.1 (DNAdirected RNA polymerase I putative [Albugo laibachii Nc14])

HSP 1 Score: 127.5 bits (319), Expect = 3.700e-26
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 0
Query:    1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151
            M+  LF+D F +  LNP  K F +V R+VGK   +E++L LDINSE++ +K+ D+    L  T   +GKPD   Y     +TL+D+YDY  YGK+F  E        GGN    VAI  SFGGLLM+L G+Q+H+  +  DS +YC +RK
Sbjct:   72 MATELFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEH------EGGN---NVAIYASFGGLLMRLRGEQRHLHLVHNDSRVYCLLRK 212          
BLAST of NO05G03080 vs. NCBI_GenBank
Match: CCA16789.1 (DNAdirected RNA polymerase I putative [Albugo laibachii Nc14])

HSP 1 Score: 127.5 bits (319), Expect = 3.700e-26
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 0
Query:    1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151
            M+  LF+D F +  LNP  K F +V R+VGK   +E++L LDINSE++ +K+ D+    L  T   +GKPD   Y     +TL+D+YDY  YGK+F  E        GGN    VAI  SFGGLLM+L G+Q+H+  +  DS +YC +RK
Sbjct:   75 MATELFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEH------EGGN---NVAIYASFGGLLMRLRGEQRHLHLVHNDSRVYCLLRK 215          
BLAST of NO05G03080 vs. NCBI_GenBank
Match: CBN76194.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 125.9 bits (315), Expect = 1.100e-25
Identity = 63/151 (41.72%), Postives = 94/151 (62.25%), Query Frame = 0
Query:    1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQH-DMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151
            MS  LF+D F +  LNP  K+F RV+RL  K   ++MDLLLD N +IY VK+G+ +  ++  T    GKPD   Y+      +L D+Y+YV +G+V++ +           K+ KV +  SFGGLLM+L+GDQ+HVA I +DS ++C +R+
Sbjct:    1 MSGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQ---------QKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142          
BLAST of NO05G03080 vs. NCBI_GenBank
Match: XP_009531265.1 (hypothetical protein PHYSODRAFT_355025 [Phytophthora sojae] >EGZ13836.1 hypothetical protein PHYSODRAFT_355025 [Phytophthora sojae] >OWZ00202.1 hypothetical protein PHMEG_00028668 [Phytophthora megakarya] >POM60061.1 DNA-directed RNA polymerase I, II, and III subunit rpABC3 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 123.2 bits (308), Expect = 7.000e-25
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 0
Query:    1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151
            M+  LF+D F +  LNP  K+F +V R+V K   +E++L LDINSE+Y ++Q ++  L L  T   +GKPD   +      TL+D+YDY  YGKVF+ +        GGN    VAI  SFGGLLM L G+Q+H+  I  D+ IYC +RK
Sbjct:    1 MATELFEDIFEVRQLNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTLALVSTLDLEGKPDDGMFNQSGKPTLLDRYDYGMYGKVFQYDH------EGGN---MVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141          
BLAST of NO05G03080 vs. NCBI_GenBank
Match: XP_024578344.1 (dnadirected rna polymerase i [Plasmopara halstedii] >CEG41975.1 dnadirected rna polymerase i [Plasmopara halstedii])

HSP 1 Score: 123.2 bits (308), Expect = 7.000e-25
Identity = 66/153 (43.14%), Postives = 93/153 (60.78%), Query Frame = 0
Query:    1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRKTKT 154
            M+  LF+D F +  LNP  K+F +V R+V K   +E++L LDINSE+Y ++Q ++  L L  T   +GKPD   +      TL+D+YDY  YGKVF+ +        GGN    VAI  SFGGLLM L G+Q+H+  I  D+ IYC +RK ++
Sbjct:   17 MATELFEDIFEVRQLNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTLALVSTLDLEGKPDDGIFNQSGKPTLLDRYDYGMYGKVFQYDH------EGGN---MVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRKQES 160          
BLAST of NO05G03080 vs. NCBI_GenBank
Match: XP_002903317.1 (DNA-directed RNA polymerase I, II, and III subunit rpabc3, putative [Phytophthora infestans T30-4] >XP_008893462.1 hypothetical protein PPTG_01825 [Phytophthora parasitica INRA-310] >EEY55741.1 DNA-directed RNA polymerase I, II, and III subunit rpabc3, putative [Phytophthora infestans T30-4] >ETI44931.1 hypothetical protein F443_10376 [Phytophthora parasitica P1569] >ETK84932.1 hypothetical protein L915_10151 [Phytophthora parasitica] >ETL38350.1 hypothetical protein L916_10059 [Phytophthora parasitica] >ETL91481.1 hypothetical protein L917_09988 [Phytophthora parasitica] >ETM44778.1 hypothetical protein L914_10022 [Phytophthora parasitica] >ETN21699.1 hypothetical protein PPTG_01825 [Phytophthora parasitica INRA-310] >ETO73575.1 hypothetical protein F444_10488 [Phytophthora parasitica P1976] >ETP14758.1 hypothetical protein F441_10328 [Phytophthora parasitica CJ01A1] >ETP42828.1 hypothetical protein F442_10294 [Phytophthora parasitica P10297] >KUF90448.1 DNA-directed RNA polymerases I [Phytophthora nicotianae])

HSP 1 Score: 122.9 bits (307), Expect = 9.100e-25
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 0
Query:    1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151
            M+  LF+D F +  LNP  K+F +V R+V K   +E++L LDINSE+Y ++Q ++  L L  T   +GKPD   +      TL+D+YDY  YGKVF+ +        GGN    VAI  SFGGLLM L G+Q+H+  I  D+ IYC +RK
Sbjct:    1 MATELFEDIFEVRQLNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTLALVSTLDLEGKPDDGIFNQSGKPTLLDRYDYGMYGKVFQYDH------EGGN---MVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141          
The following BLAST results are available for this feature:
BLAST of NO05G03080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28083.16.400e-7186.08dna-directed rna polymerases and iii subunit rpabc... [more]
CCI42344.15.700e-2744.67unnamed protein product [Albugo candida][more]
CCI42345.15.700e-2744.67unnamed protein product [Albugo candida][more]
CCA16787.13.700e-2644.00DNAdirected RNA polymerase I putative [Albugo laib... [more]
CCA16788.13.700e-2644.00DNAdirected RNA polymerase I putative [Albugo laib... [more]
CCA16789.13.700e-2644.00DNAdirected RNA polymerase I putative [Albugo laib... [more]
CBN76194.11.100e-2541.72conserved unknown protein [Ectocarpus siliculosus][more]
XP_009531265.17.000e-2544.00hypothetical protein PHYSODRAFT_355025 [Phytophtho... [more]
XP_024578344.17.000e-2543.14dnadirected rna polymerase i [Plasmopara halstedii... [more]
XP_002903317.19.100e-2544.00DNA-directed RNA polymerase I, II, and III subunit... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003559NSK003559Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03080.1NO05G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G03080.2NO05G03080.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584606gene_3113Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100120g23gene2470Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03080.1NO05G03080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G03080.2NO05G03080.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03080 ID=NO05G03080|Name=NO05G03080|organism=Nannochloropsis oceanica|type=gene|length=2081bp
CCAGGGGTGTACGGCATAGTTCTGGAATGTGATTTGGGATTTGGGTTGTG
CGGTTGAGTGACGGGCGAAAGAAAGCGTTTCGGGCGATAAGGGCCAGGGA
GTGGCGGGTGGATGGAGACCAAGACGCAGCAGTGGTAGCGCATTTCAGGG
ATTTTCTACTCGTGCTCGCCCTCCTCCATCTCCTACTTCTGCTGCAGTCT
GTGGAGTACAGTGAGTGCTGTGGTAGGACGGCGTCGAGTTTAGCAAAAAA
GAACATTGCCAAATCTGATCGCGAGGAAATCTTCGCGCCCTGCCTCTTGG
CCCGGTGCTTGGGCCAAGCAGCTTGGCCCAAACGCACACATTTCACATCA
CTGTATTCGGAGTCTACCCTTTTGGCGCCTGTGCTAAGTAACCTTCCTAG
TCCATCCTCCACAACGCACAGGCACACAACCCAGCTAAACCGCAGCTAAA
TTACCTCCCCTCCCTTCGTCGTCATCTTTGTATCTAAAGGCTTCAGTCGC
GCGTTCCGCTACACTCCTTTCTTCTCAATTTAGCCACAATGTCACACAAC
CTCTTTGACGACACCTTTGTCATAACAAGCCTAAACCCGCACAAGAAGCG
CTTTGCTCGAGgtaaggaggacaagggcacagaaacggcacaggggctga
gaggaggctggtgagagggtagggctgggaggagagctcgttgcacactg
ttctctgtgagccgagcattaccatgagactgtgccaagtgatggcggag
atgaaagtgtgtttagttcgatggctctacgaagctatcagggcatcacg
cggtacgggaggcgagaaatgggacaattttctccaaacacccacgcact
aatacctcgcgaacatatggacagTTGATCGATTGGTGGGCAAGAGCACG
CTGTTCGAGATGGACTTGTTGCTAGgtgaggaaattttgttgagatttgc
gggtggtagtatgggggaccggcgagtcagttttttcttgtatccttcct
tagttatgcctcttctttcccccatccgcctacgtaaacaatatgcacag
ATATTAATAGCGAGATTTATACCGTCAAGCAAGGCGACGAGATTGCGCTA
ATGTTGACGCAgtaagtgcaaggataagtggagaaagagactggaggtgt
caatttgtgagactttttgttgaagtattttgttgtttttttagggggtc
ccaagagtagccttcagacttcaatattcctgccgatctttgtctgtcat
tgaatgtcctcactctgtataatttgcttcgttttccagctttctccgcc
cttcattttgacacattcactcatccatacccccggctccgttttctcat
ttctctcccgctaaacagCACGCCGTACAGCGACGGAAAGCCTGATCCAA
AAGAGTACCAGCACGACATGTCGgtacgtttttcgtgtgctttattatct
gtagacagccggagcgggccattttaggttggtccagaacagagcaagga
gaaaggagggtttcttacgtctcttgaatcattcttttcctttctttttt
ccagTCAACGCTTATGGACCAGTACGACTACGTTACATACGGCAAGGTCT
TCAAGATTGAATCAGTGGCATCAGGCGGGGTAGCAGGAGGAAATAAAGAA
CCCAAGGTGGCCATCATGATTTCGTTCGGTGGCCTGCTTATGAAGCTTTC
AGGGGATCAAAAgtaagacgataacttgcgtgcgtggtagctggaaatga
ggatgggttgcgtgtgtgtaaacttggggttgatttgctacggtgacttc
caggagaaacaaggcggaattgtcgtgtcgaacggtcgtttttgccgata
gcatgtccaaagggacactttcaatttcgattttttgtttttctcacacg
tacatcacacgcacacacacctttgtacaatagGCACGTGGCTCGAATTT
CTATCGACAGTCCCATCTACTGCTTCGTCCGCAAGACTAAGACTAACAGA
GCAAGTTAAGGAAGGAGGGAGAGATTCGACATCTCCATATACATAGTCCA
AAACAAAAAGAAACAAATTTGGAAAGTCAGG
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protein sequence of NO05G03080.1

>NO05G03080.1-protein ID=NO05G03080.1-protein|Name=NO05G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTV
KQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIES
VASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK
TKTNRAS*
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protein sequence of NO05G03080.2

>NO05G03080.2-protein ID=NO05G03080.2-protein|Name=NO05G03080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQ
YDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVA
RISIDSPIYCFVRKTKTNRAS*
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Synonyms
Publications