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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:796736..798816 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03080.1 vs.
Match: EWM28083.1 (dna-directed rna polymerases and iii subunit rpabc3 [Nannochloropsis gaditana]) HSP 1 Score: 276.2 bits (705), Expect = 6.400e-71 Identity = 136/158 (86.08%), Postives = 144/158 (91.14%), Query Frame = 0
Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGV-AGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRKTKTNRAS 158
MSHNLFDDTFVIT LNPHKKRFARVDRLVG+STLFEMDL+LDINSEIY V+Q DEIALML HTPYSDGK DPKEYQHDMSS LMDQY+YVTYGKVFKIES S G GG+KE KVAIMISFGGLLMKLSGDQKHVARISIDSPIYCF+RKTKT+R +
Sbjct: 64 MSHNLFDDTFVITGLNPHKKRFARVDRLVGRSTLFEMDLILDINSEIYQVRQDDEIALMLAHTPYSDGKLDPKEYQHDMSSALMDQYEYVTYGKVFKIESAPSAGANVGGSKESKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFIRKTKTSRTT 221
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03080.1 ID=NO05G03080.1|Name=NO05G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1084bp CCAGGGGTGTACGGCATAGTTCTGGAATGTGATTTGGGATTTGGGTTGTG CGGTTGAGTGACGGGCGAAAGAAAGCGTTTCGGGCGATAAGGGCCAGGGA GTGGCGGGTGGATGGAGACCAAGACGCAGCAGTGGTAGCGCATTTCAGGG ATTTTCTACTCGTGCTCGCCCTCCTCCATCTCCTACTTCTGCTGCAGTCT GTGGAGTACAGTGAGTGCTGTGGTAGGACGGCGTCGAGTTTAGCAAAAAA GAACATTGCCAAATCTGATCGCGAGGAAATCTTCGCGCCCTGCCTCTTGG CCCGGTGCTTGGGCCAAGCAGCTTGGCCCAAACGCACACATTTCACATCA CTGTATTCGGAGTCTACCCTTTTGGCGCCTGTGCTAAGTAACCTTCCTAG TCCATCCTCCACAACGCACAGGCACACAACCCAGCTAAACCGCAGCTAAA TTACCTCCCCTCCCTTCGTCGTCATCTTTGTATCTAAAGGCTTCAGTCGC GCGTTCCGCTACACTCCTTTCTTCTCAATTTAGCCACAATGTCACACAAC CTCTTTGACGACACCTTTGTCATAACAAGCCTAAACCCGCACAAGAAGCG CTTTGCTCGAGTTGATCGATTGGTGGGCAAGAGCACGCTGTTCGAGATGG ACTTGTTGCTAGATATTAATAGCGAGATTTATACCGTCAAGCAAGGCGAC GAGATTGCGCTAATGTTGACGCACACGCCGTACAGCGACGGAAAGCCTGA TCCAAAAGAGTACCAGCACGACATGTCGTCAACGCTTATGGACCAGTACG ACTACGTTACATACGGCAAGGTCTTCAAGATTGAATCAGTGGCATCAGGC GGGGTAGCAGGAGGAAATAAAGAACCCAAGGTGGCCATCATGATTTCGTT CGGTGGCCTGCTTATGAAGCTTTCAGGGGATCAAAAGCACGTGGCTCGAA TTTCTATCGACAGTCCCATCTACTGCTTCGTCCGCAAGACTAAGACTAAC AGAGCAAGTTAAGGAAGGAGGGAGAGATTCGACATCTCCATATACATAGT CCAAAACAAAAAGAAACAAATTTGGAAAGTCAGG back to topprotein sequence of NO05G03080.1 >NO05G03080.1-protein ID=NO05G03080.1-protein|Name=NO05G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTV KQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIES VASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK TKTNRAS* back to topmRNA from alignment at chr5:796736..798816+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03080.1 ID=NO05G03080.1|Name=NO05G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2081bp|location=Sequence derived from alignment at chr5:796736..798816+ (Nannochloropsis oceanica) CCAGGGGTGTACGGCATAGTTCTGGAATGTGATTTGGGATTTGGGTTGTG
CGGTTGAGTGACGGGCGAAAGAAAGCGTTTCGGGCGATAAGGGCCAGGGA
GTGGCGGGTGGATGGAGACCAAGACGCAGCAGTGGTAGCGCATTTCAGGG
ATTTTCTACTCGTGCTCGCCCTCCTCCATCTCCTACTTCTGCTGCAGTCT
GTGGAGTACAGTGAGTGCTGTGGTAGGACGGCGTCGAGTTTAGCAAAAAA
GAACATTGCCAAATCTGATCGCGAGGAAATCTTCGCGCCCTGCCTCTTGG
CCCGGTGCTTGGGCCAAGCAGCTTGGCCCAAACGCACACATTTCACATCA
CTGTATTCGGAGTCTACCCTTTTGGCGCCTGTGCTAAGTAACCTTCCTAG
TCCATCCTCCACAACGCACAGGCACACAACCCAGCTAAACCGCAGCTAAA
TTACCTCCCCTCCCTTCGTCGTCATCTTTGTATCTAAAGGCTTCAGTCGC
GCGTTCCGCTACACTCCTTTCTTCTCAATTTAGCCACAATGTCACACAAC
CTCTTTGACGACACCTTTGTCATAACAAGCCTAAACCCGCACAAGAAGCG
CTTTGCTCGAGGTAAGGAGGACAAGGGCACAGAAACGGCACAGGGGCTGA
GAGGAGGCTGGTGAGAGGGTAGGGCTGGGAGGAGAGCTCGTTGCACACTG
TTCTCTGTGAGCCGAGCATTACCATGAGACTGTGCCAAGTGATGGCGGAG
ATGAAAGTGTGTTTAGTTCGATGGCTCTACGAAGCTATCAGGGCATCACG
CGGTACGGGAGGCGAGAAATGGGACAATTTTCTCCAAACACCCACGCACT
AATACCTCGCGAACATATGGACAGTTGATCGATTGGTGGGCAAGAGCACG
CTGTTCGAGATGGACTTGTTGCTAGGTGAGGAAATTTTGTTGAGATTTGC
GGGTGGTAGTATGGGGGACCGGCGAGTCAGTTTTTTCTTGTATCCTTCCT
TAGTTATGCCTCTTCTTTCCCCCATCCGCCTACGTAAACAATATGCACAG
ATATTAATAGCGAGATTTATACCGTCAAGCAAGGCGACGAGATTGCGCTA
ATGTTGACGCAGTAAGTGCAAGGATAAGTGGAGAAAGAGACTGGAGGTGT
CAATTTGTGAGACTTTTTGTTGAAGTATTTTGTTGTTTTTTTAGGGGGTC
CCAAGAGTAGCCTTCAGACTTCAATATTCCTGCCGATCTTTGTCTGTCAT
TGAATGTCCTCACTCTGTATAATTTGCTTCGTTTTCCAGCTTTCTCCGCC
CTTCATTTTGACACATTCACTCATCCATACCCCCGGCTCCGTTTTCTCAT
TTCTCTCCCGCTAAACAGCACGCCGTACAGCGACGGAAAGCCTGATCCAA
AAGAGTACCAGCACGACATGTCGGTACGTTTTTCGTGTGCTTTATTATCT
GTAGACAGCCGGAGCGGGCCATTTTAGGTTGGTCCAGAACAGAGCAAGGA
GAAAGGAGGGTTTCTTACGTCTCTTGAATCATTCTTTTCCTTTCTTTTTT
CCAGTCAACGCTTATGGACCAGTACGACTACGTTACATACGGCAAGGTCT
TCAAGATTGAATCAGTGGCATCAGGCGGGGTAGCAGGAGGAAATAAAGAA
CCCAAGGTGGCCATCATGATTTCGTTCGGTGGCCTGCTTATGAAGCTTTC
AGGGGATCAAAAGTAAGACGATAACTTGCGTGCGTGGTAGCTGGAAATGA
GGATGGGTTGCGTGTGTGTAAACTTGGGGTTGATTTGCTACGGTGACTTC
CAGGAGAAACAAGGCGGAATTGTCGTGTCGAACGGTCGTTTTTGCCGATA
GCATGTCCAAAGGGACACTTTCAATTTCGATTTTTTGTTTTTCTCACACG
TACATCACACGCACACACACCTTTGTACAATAGGCACGTGGCTCGAATTT
CTATCGACAGTCCCATCTACTGCTTCGTCCGCAAGACTAAGACTAACAGA
GCAAGTTAAGGAAGGAGGGAGAGATTCGACATCTCCATATACATAGTCCA
AAACAAAAAGAAACAAATTTGGAAAGTCAGG back to topCoding sequence (CDS) from alignment at chr5:796736..798816+ >NO05G03080.1 ID=NO05G03080.1|Name=NO05G03080.1|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at chr5:796736..798816+ (Nannochloropsis oceanica) ATGTCACACAACCTCTTTGACGACACCTTTGTCATAACAAGCCTAAACCC GCACAAGAAGCGCTTTGCTCGAGTTGATCGATTGGTGGGCAAGAGCACGC TGTTCGAGATGGACTTGTTGCTAGATATTAATAGCGAGATTTATACCGTC AAGCAAGGCGACGAGATTGCGCTAATGTTGACGCACACGCCGTACAGCGA CGGAAAGCCTGATCCAAAAGAGTACCAGCACGACATGTCGTCAACGCTTA TGGACCAGTACGACTACGTTACATACGGCAAGGTCTTCAAGATTGAATCA GTGGCATCAGGCGGGGTAGCAGGAGGAAATAAAGAACCCAAGGTGGCCAT CATGATTTCGTTCGGTGGCCTGCTTATGAAGCTTTCAGGGGATCAAAAGC ACGTGGCTCGAATTTCTATCGACAGTCCCATCTACTGCTTCGTCCGCAAG ACTAAGACTAACAGAGCAAGTTAA back to top
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