NO05G03080.2, NO05G03080.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03080.2
Unique NameNO05G03080.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1347
Alignment locationchr5:796736..798816 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:796736..798816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03080.2 vs.
Match: EWM28083.1 (dna-directed rna polymerases and iii subunit rpabc3 [Nannochloropsis gaditana])

HSP 1 Score: 206.1 bits (523), Expect = 6.300e-50
Identity = 102/122 (83.61%), Postives = 109/122 (89.34%), Query Frame = 0 
Query:    1 MDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGV-AGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRKTKTNRAS 122
            MDL+LDINSEIY V+Q DEIALML HTPYSDGK DPKEYQHDMSS LMDQY+YVTYGKVFKIES  S G   GG+KE KVAIMISFGGLLMKLSGDQKHVARISIDSPIYCF+RKTKT+R +
Sbjct:  100 MDLILDINSEIYQVRQDDEIALMLAHTPYSDGKLDPKEYQHDMSSALMDQYEYVTYGKVFKIESAPSAGANVGGSKESKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFIRKTKTSRTT 221
The following BLAST results are available for this feature:
BLAST of NO05G03080.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28083.16.300e-5083.61dna-directed rna polymerases and iii subunit rpabc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03080NO05G03080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03080.2NO05G03080.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03080.2.cds1NO05G03080.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03080.2.cds2NO05G03080.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03080.2.cds3NO05G03080.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03080.2.cds4NO05G03080.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03080.2.cds5NO05G03080.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03080.2 ID=NO05G03080.2|Name=NO05G03080.2|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
CCAGGGGTGTACGGCATAGTTCTGGAATGTGATTTGGGATTTGGGTTGTG
CGGTTGAGTGACGGGCGAAAGAAAGCGTTTCGGGCGATAAGGGCCAGGGA
GTGGCGGGTGGATGGAGACCAAGACGCAGCAGTGGTAGCGCATTTCAGGG
ATTTTCTACTCGTGCTCGCCCTCCTCCATCTCCTACTTCTGCTGCAGTCT
GTGGAGTACAGTGAGTGCTGTGGTAGGACGGCGTCGAGTTTAGCAAAAAA
GAACATTGCCAAATCTGATCGCGAGGAAATCTTCGCGCCCTGCCTCTTGG
CCCGGTGCTTGGGCCAAGCAGCTTGGCCCAAACGCACACATTTCACATCA
CTGTATTCGGAGTCTACCCTTTTGGCGCCTGTGCTAAGTAACCTTCCTAG
TCCATCCTCCACAACGCACAGGCACACAACCCAGCTAAACCGCAGCTAAA
TTACCTCCCCTCCCTTCGTCGTCATCTTTGTATCTAAAGGCTTCAGTCGC
GCGTTCCGCTACACTCCTTTCTTCTCAATTTAGCCACAATGTCACACAAC
CTCTTTGACGACACCTTTGTCATAACAAGCCTAAACCCGCACAAGAAGCG
CTTTGCTCGAGGTAAGGAGGACAAGGGCACAGAAACGGCACAGGGGCTGA
GAGGAGGCTGGTGAGAGGGTAGGGCTGGGAGGAGAGCTCGTTGCACACTG
TTCTCTGTGAGCCGAGCATTACCATGAGACTGTGCCAAGTGATGGCGGAG
ATGAAAGTGTGTTTAGTTCGATGGCTCTACGAAGCTATCAGGGCATCACG
CGGTACGGGAGGCGAGAAATGGGACAATTTTCTCCAAACACCCACGCACT
AATACCTCGCGAACATATGGACAGTTGATCGATTGGTGGGCAAGAGCACG
CTGTTCGAGATGGACTTGTTGCTAGATATTAATAGCGAGATTTATACCGT
CAAGCAAGGCGACGAGATTGCGCTAATGTTGACGCACACGCCGTACAGCG
ACGGAAAGCCTGATCCAAAAGAGTACCAGCACGACATGTCGTCAACGCTT
ATGGACCAGTACGACTACGTTACATACGGCAAGGTCTTCAAGATTGAATC
AGTGGCATCAGGCGGGGTAGCAGGAGGAAATAAAGAACCCAAGGTGGCCA
TCATGATTTCGTTCGGTGGCCTGCTTATGAAGCTTTCAGGGGATCAAAAG
CACGTGGCTCGAATTTCTATCGACAGTCCCATCTACTGCTTCGTCCGCAA
GACTAAGACTAACAGAGCAAGTTAAGGAAGGAGGGAGAGATTCGACATCT
CCATATACATAGTCCAAAACAAAAAGAAACAAATTTGGAAAGTCAGG
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protein sequence of NO05G03080.2

>NO05G03080.2-protein ID=NO05G03080.2-protein|Name=NO05G03080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQ
YDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVA
RISIDSPIYCFVRKTKTNRAS*
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mRNA from alignment at chr5:796736..798816+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03080.2 ID=NO05G03080.2|Name=NO05G03080.2|organism=Nannochloropsis oceanica|type=mRNA|length=2081bp|location=Sequence derived from alignment at chr5:796736..798816+ (Nannochloropsis oceanica)
CCAGGGGTGTACGGCATAGTTCTGGAATGTGATTTGGGATTTGGGTTGTG
CGGTTGAGTGACGGGCGAAAGAAAGCGTTTCGGGCGATAAGGGCCAGGGA
GTGGCGGGTGGATGGAGACCAAGACGCAGCAGTGGTAGCGCATTTCAGGG
ATTTTCTACTCGTGCTCGCCCTCCTCCATCTCCTACTTCTGCTGCAGTCT
GTGGAGTACAGTGAGTGCTGTGGTAGGACGGCGTCGAGTTTAGCAAAAAA
GAACATTGCCAAATCTGATCGCGAGGAAATCTTCGCGCCCTGCCTCTTGG
CCCGGTGCTTGGGCCAAGCAGCTTGGCCCAAACGCACACATTTCACATCA
CTGTATTCGGAGTCTACCCTTTTGGCGCCTGTGCTAAGTAACCTTCCTAG
TCCATCCTCCACAACGCACAGGCACACAACCCAGCTAAACCGCAGCTAAA
TTACCTCCCCTCCCTTCGTCGTCATCTTTGTATCTAAAGGCTTCAGTCGC
GCGTTCCGCTACACTCCTTTCTTCTCAATTTAGCCACAATGTCACACAAC
CTCTTTGACGACACCTTTGTCATAACAAGCCTAAACCCGCACAAGAAGCG
CTTTGCTCGAGGTAAGGAGGACAAGGGCACAGAAACGGCACAGGGGCTGA
GAGGAGGCTGGTGAGAGGGTAGGGCTGGGAGGAGAGCTCGTTGCACACTG
TTCTCTGTGAGCCGAGCATTACCATGAGACTGTGCCAAGTGATGGCGGAG
ATGAAAGTGTGTTTAGTTCGATGGCTCTACGAAGCTATCAGGGCATCACG
CGGTACGGGAGGCGAGAAATGGGACAATTTTCTCCAAACACCCACGCACT
AATACCTCGCGAACATATGGACAGTTGATCGATTGGTGGGCAAGAGCACG
CTGTTCGAGATGGACTTGTTGCTAGGTGAGGAAATTTTGTTGAGATTTGC
GGGTGGTAGTATGGGGGACCGGCGAGTCAGTTTTTTCTTGTATCCTTCCT
TAGTTATGCCTCTTCTTTCCCCCATCCGCCTACGTAAACAATATGCACAG
ATATTAATAGCGAGATTTATACCGTCAAGCAAGGCGACGAGATTGCGCTA
ATGTTGACGCAGTAAGTGCAAGGATAAGTGGAGAAAGAGACTGGAGGTGT
CAATTTGTGAGACTTTTTGTTGAAGTATTTTGTTGTTTTTTTAGGGGGTC
CCAAGAGTAGCCTTCAGACTTCAATATTCCTGCCGATCTTTGTCTGTCAT
TGAATGTCCTCACTCTGTATAATTTGCTTCGTTTTCCAGCTTTCTCCGCC
CTTCATTTTGACACATTCACTCATCCATACCCCCGGCTCCGTTTTCTCAT
TTCTCTCCCGCTAAACAGCACGCCGTACAGCGACGGAAAGCCTGATCCAA
AAGAGTACCAGCACGACATGTCGGTACGTTTTTCGTGTGCTTTATTATCT
GTAGACAGCCGGAGCGGGCCATTTTAGGTTGGTCCAGAACAGAGCAAGGA
GAAAGGAGGGTTTCTTACGTCTCTTGAATCATTCTTTTCCTTTCTTTTTT
CCAGTCAACGCTTATGGACCAGTACGACTACGTTACATACGGCAAGGTCT
TCAAGATTGAATCAGTGGCATCAGGCGGGGTAGCAGGAGGAAATAAAGAA
CCCAAGGTGGCCATCATGATTTCGTTCGGTGGCCTGCTTATGAAGCTTTC
AGGGGATCAAAAGTAAGACGATAACTTGCGTGCGTGGTAGCTGGAAATGA
GGATGGGTTGCGTGTGTGTAAACTTGGGGTTGATTTGCTACGGTGACTTC
CAGGAGAAACAAGGCGGAATTGTCGTGTCGAACGGTCGTTTTTGCCGATA
GCATGTCCAAAGGGACACTTTCAATTTCGATTTTTTGTTTTTCTCACACG
TACATCACACGCACACACACCTTTGTACAATAGGCACGTGGCTCGAATTT
CTATCGACAGTCCCATCTACTGCTTCGTCCGCAAGACTAAGACTAACAGA
GCAAGTTAAGGAAGGAGGGAGAGATTCGACATCTCCATATACATAGTCCA
AAACAAAAAGAAACAAATTTGGAAAGTCAGG
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Coding sequence (CDS) from alignment at chr5:796736..798816+

>NO05G03080.2 ID=NO05G03080.2|Name=NO05G03080.2|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at chr5:796736..798816+ (Nannochloropsis oceanica)
ATGGACTTGTTGCTAGATATTAATAGCGAGATTTATACCGTCAAGCAAGG
CGACGAGATTGCGCTAATGTTGACGCACACGCCGTACAGCGACGGAAAGC
CTGATCCAAAAGAGTACCAGCACGACATGTCGTCAACGCTTATGGACCAG
TACGACTACGTTACATACGGCAAGGTCTTCAAGATTGAATCAGTGGCATC
AGGCGGGGTAGCAGGAGGAAATAAAGAACCCAAGGTGGCCATCATGATTT
CGTTCGGTGGCCTGCTTATGAAGCTTTCAGGGGATCAAAAGCACGTGGCT
CGAATTTCTATCGACAGTCCCATCTACTGCTTCGTCCGCAAGACTAAGAC
TAACAGAGCAAGTTAA
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Synonyms
Publications