NO05G02240, NO05G02240 (gene) Nannochloropsis oceanica

Overview
NameNO05G02240
Unique NameNO05G02240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1496
Alignment locationchr5:596862..598357 +

Link to JBrowse

Properties
Property NameValue
DescriptionHigh mobility group protein b3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:596862..598357 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
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BLAST of NO05G02240 vs. NCBI_GenBank
Match: EWM28234.1 (high mobility group protein b3 [Nannochloropsis gaditana])

HSP 1 Score: 177.6 bits (449), Expect = 5.200e-41
Identity = 100/141 (70.92%), Postives = 109/141 (77.30%), Query Frame = 0 
Query:   54 LDPQKLSLCYAKLFQKQQVFAAQQAAVFAKLAAGDKATLEAVLKLPDAQPSPEEANGAGNGKKRK-AKRDPDLPKRPKSGYQFYVCEHTPTLRAAQPEAKMKELMGVLANDWKKLSEEEKEKYQXXXXXXXXXXQDKMDSY 194
            LD QKL+LC+AKLFQKQ  FAAQ AA+FAKLAAGD+ATLEAVL LP+ +   EE NG   GKKR+ AKRDPDLPKRPKSGYQ YVCE TPTLRA QPEAKM ELM VLANDWK L+EEEKEKYQ          QDK+  Y
Sbjct:   12 LDFQKLALCFAKLFQKQAAFAAQHAAIFAKLAAGDEATLEAVLNLPE-EKCTEETNG---GKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADY 148
The following BLAST results are available for this feature:
BLAST of NO05G02240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28234.15.200e-4170.92high mobility group protein b3 [Nannochloropsis ga... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003642NSK003642Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02240.1NO05G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02240.2NO05G02240.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584239gene_3026Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g148gene2394Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02240.1NO05G02240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02240.2NO05G02240.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02240 ID=NO05G02240|Name=NO05G02240|organism=Nannochloropsis oceanica|type=gene|length=1496bp
ATGCGTCCGCAATGCCTTTGTTTTCTCTTGTACTTGTGTAACTGTGTAAG
GAAGGAGAAGgtaaacgagagggtgagacatgggcgcagtcgtaaagcaa
ctttgggcatgggagccgcctgcgtttcgacgaacaagaagcacgagata
gagatcatctatgacgatcaatgatgttctctctgttgtggagtagttgc
tttacagtgtcgctcaaagataccagcccatccaccaccacacaacacca
cacagACACCACAACTTTGGGGAGCGTCAGTGGCACCAAGTTTGGCGTCC
CCACAAGCGACAAGgtaagcacttatttgccccccttcagcaaaatcctt
cgcgcacgattgacacacaaccgcttttccggcccaaaactttaacacac
ctagATCACACAACACCACCAGCACCATGGCAGAAGGCGCTCTTTTGGAT
CCCCAGAAGCTCTCGTTGTGCTATGCGAAGCTCTTTCAGAAACAACAAGT
CTTTGCCGCCCAGCAGGCCGCAGTCTTTGCCAAGCTGGCCGCTGGGGACA
AGGCTACCCTCGAAGCTGTGCTGAAGCTGCCCGACGCACAGCCCTCCCCG
GAGGAGGCGAACGGAGCGGGAAATGGGAAGAAGCGCAAGGCGAAGCGGGA
TCCGGACTTGCCGAAACGGCCCAAGAGCGGGTACCAGTTTTATGTCTGTG
AGCACACCCCGACGCTGCGTGCGGCCCAGCCAGAGGCCAAGATGAAGGAG
CTCATGGGGGTGCTAGCTAACGACTGGAAAAAGCTGAGCGAAGAGGAGAA
GGAAAAGTATCAGAAGCTTGCAGTGGAGGAGAAGACAGTGTACCAGGACA
AGATGGATAGCTACAAGGCCAACAAAACCGGCGGCGGTGGTGGGGGGGAG
GGAGGAGCCGCTGTCAAGGCGACTGCCCCGGTGATGGCGTCGGCCAAGGA
TGCAGAGGAGCAGGAGGAGGAAGAGGACACAGAGTCAGACACGTCAGAGG
AGAAAGAGGTGAAGAAGTCCAAGAAGAAGAAACACAAGAAGCACAAGAAG
CACCACGACAAGACCCGAGAAGAGTCCTAAAACAGGGAGAAGGCCACGAA
AGGGACGCTGAGAATGGGATAAAATGGGGACTATGCGTTTATTTTTCGGT
CGGGTTATGCACATGATACGATTGTGGGAAGTATATTTTTTCTACTACAA
CATCAACAACAACAGTACCCACTCCCACACCACACACCGAACGGTCCAGC
TAGAGATGAAAGAAACAGGAAAGAGAACGCCACGTCAAGGCCCAAAACAG
TATGGCTTGTCAGTGTCGTCTTTCCACGAGCATATTGTGCGAATGTGTGA
ATGTAAGAGAGAAAGAAGCTAAGAGGAAAAAGCCATGACAGAAGATCGCC
CAGCTGCTGATGGAAAGGAAAATAAGGAACAAAAGAAAGTTTCAGTCGTC
ATCCTCCTCCCACGGGATGAAACGTGAGCGAAAGAAATGACAGACA
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protein sequence of NO05G02240.1

>NO05G02240.1-protein ID=NO05G02240.1-protein|Name=NO05G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MRPQCLCFLLYLCNCVRKEKTPQLWGASVAPSLASPQATRSHNTTSTMAE
GALLDPQKLSLCYAKLFQKQQVFAAQQAAVFAKLAAGDKATLEAVLKLPD
AQPSPEEANGAGNGKKRKAKRDPDLPKRPKSGYQFYVCEHTPTLRAAQPE
AKMKELMGVLANDWKKLSEEEKEKYQKLAVEEKTVYQDKMDSYKANKTGG
GGGGEGGAAVKATAPVMASAKDAEEQEEEEDTESDTSEEKEVKKSKKKKH
KKHKKHHDKTREES*
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protein sequence of NO05G02240.2

>NO05G02240.2-protein ID=NO05G02240.2-protein|Name=NO05G02240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MRPQCLCFLLYLCNCVRKEKTPQLWGASVAPSLASPQATSTMAEGALLDP
QKLSLCYAKLFQKQQVFAAQQAAVFAKLAAGDKATLEAVLKLPDAQPSPE
EANGAGNGKKRKAKRDPDLPKRPKSGYQFYVCEHTPTLRAAQPEAKMKEL
MGVLANDWKKLSEEEKEKYQKLAVEEKTVYQDKMDSYKANKTGGGGGGEG
GAAVKATAPVMASAKDAEEQEEEEDTESDTSEEKEVKKSKKKKHKKHKKH
HDKTREES*
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Synonyms
Publications