NO05G02240.2, NO05G02240.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02240.2
Unique NameNO05G02240.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1193
Alignment locationchr5:596862..598357 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:596862..598357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02240.2 vs.
Match: EWM28234.1 (high mobility group protein b3 [Nannochloropsis gaditana])

HSP 1 Score: 241.9 bits (616), Expect = 2.200e-60
Identity = 151/217 (69.59%), Postives = 172/217 (79.26%), Query Frame = 0 
Query:   48 LDPQKLSLCYAKLFQKQQVFAAQQAAVFAKLAAGDKATLEAVLKLPDAQPSPEEANGAGNGKKRKA-KRDPDLPKRPKSGYQFYVCEHTPTLRAAQPEAKMKELMGVLANDWKKLSEEEKEKYQKLAVEEKTVYQDKMDSYKANKTGGGGGGEGGAAVKA-TAPVMASAKDAEEQEEEED----TESDTSEEKEVKKSKKKKHKKHKKHHDKTREES 259
            LD QKL+LC+AKLFQKQ  FAAQ AA+FAKLAAGD+ATLEAVL LP+ +   EE NG   GKKR+A KRDPDLPKRPKSGYQ YVCE TPTLRA QPEAKM ELM VLANDWK L+EEEKEKYQKLAV+EKT+YQDK+  YKAN++G GGGG    AV+  TA    SAK  + ++E ED    TESD+  EKE+KK+KKKKHKKHKKH DK REE+
Sbjct:   12 LDFQKLALCFAKLFQKQAAFAAQHAAIFAKLAAGDEATLEAVLNLPE-EKCTEETNG---GKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETAKPSTSAKIEKGEDEGEDHRDNTESDSESEKEMKKAKKKKHKKHKKHRDKAREEA 224
The following BLAST results are available for this feature:
BLAST of NO05G02240.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28234.12.200e-6069.59high mobility group protein b3 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02240NO05G02240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02240.2NO05G02240.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02240.2.cds1NO05G02240.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02240.2.cds2NO05G02240.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02240.2.cds3NO05G02240.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02240.2 ID=NO05G02240.2|Name=NO05G02240.2|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp
ATGCGTCCGCAATGCCTTTGTTTTCTCTTGTACTTGTGTAACTGTGTAAG
GAAGGAGAAGACACCACAACTTTGGGGAGCGTCAGTGGCACCAAGTTTGG
CGTCCCCACAAGCGACAAGCACCATGGCAGAAGGCGCTCTTTTGGATCCC
CAGAAGCTCTCGTTGTGCTATGCGAAGCTCTTTCAGAAACAACAAGTCTT
TGCCGCCCAGCAGGCCGCAGTCTTTGCCAAGCTGGCCGCTGGGGACAAGG
CTACCCTCGAAGCTGTGCTGAAGCTGCCCGACGCACAGCCCTCCCCGGAG
GAGGCGAACGGAGCGGGAAATGGGAAGAAGCGCAAGGCGAAGCGGGATCC
GGACTTGCCGAAACGGCCCAAGAGCGGGTACCAGTTTTATGTCTGTGAGC
ACACCCCGACGCTGCGTGCGGCCCAGCCAGAGGCCAAGATGAAGGAGCTC
ATGGGGGTGCTAGCTAACGACTGGAAAAAGCTGAGCGAAGAGGAGAAGGA
AAAGTATCAGAAGCTTGCAGTGGAGGAGAAGACAGTGTACCAGGACAAGA
TGGATAGCTACAAGGCCAACAAAACCGGCGGCGGTGGTGGGGGGGAGGGA
GGAGCCGCTGTCAAGGCGACTGCCCCGGTGATGGCGTCGGCCAAGGATGC
AGAGGAGCAGGAGGAGGAAGAGGACACAGAGTCAGACACGTCAGAGGAGA
AAGAGGTGAAGAAGTCCAAGAAGAAGAAACACAAGAAGCACAAGAAGCAC
CACGACAAGACCCGAGAAGAGTCCTAAAACAGGGAGAAGGCCACGAAAGG
GACGCTGAGAATGGGATAAAATGGGGACTATGCGTTTATTTTTCGGTCGG
GTTATGCACATGATACGATTGTGGGAAGTATATTTTTTCTACTACAACAT
CAACAACAACAGTACCCACTCCCACACCACACACCGAACGGTCCAGCTAG
AGATGAAAGAAACAGGAAAGAGAACGCCACGTCAAGGCCCAAAACAGTAT
GGCTTGTCAGTGTCGTCTTTCCACGAGCATATTGTGCGAATGTGTGAATG
TAAGAGAGAAAGAAGCTAAGAGGAAAAAGCCATGACAGAAGATCGCCCAG
CTGCTGATGGAAAGGAAAATAAGGAACAAAAGAAAGTTTCAGTCGTCATC
CTCCTCCCACGGGATGAAACGTGAGCGAAAGAAATGACAGACA
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protein sequence of NO05G02240.2

>NO05G02240.2-protein ID=NO05G02240.2-protein|Name=NO05G02240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MRPQCLCFLLYLCNCVRKEKTPQLWGASVAPSLASPQATSTMAEGALLDP
QKLSLCYAKLFQKQQVFAAQQAAVFAKLAAGDKATLEAVLKLPDAQPSPE
EANGAGNGKKRKAKRDPDLPKRPKSGYQFYVCEHTPTLRAAQPEAKMKEL
MGVLANDWKKLSEEEKEKYQKLAVEEKTVYQDKMDSYKANKTGGGGGGEG
GAAVKATAPVMASAKDAEEQEEEEDTESDTSEEKEVKKSKKKKHKKHKKH
HDKTREES*
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mRNA from alignment at chr5:596862..598357+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02240.2 ID=NO05G02240.2|Name=NO05G02240.2|organism=Nannochloropsis oceanica|type=mRNA|length=1496bp|location=Sequence derived from alignment at chr5:596862..598357+ (Nannochloropsis oceanica)
ATGCGTCCGCAATGCCTTTGTTTTCTCTTGTACTTGTGTAACTGTGTAAG
GAAGGAGAAGGTAAACGAGAGGGTGAGACATGGGCGCAGTCGTAAAGCAA
CTTTGGGCATGGGAGCCGCCTGCGTTTCGACGAACAAGAAGCACGAGATA
GAGATCATCTATGACGATCAATGATGTTCTCTCTGTTGTGGAGTAGTTGC
TTTACAGTGTCGCTCAAAGATACCAGCCCATCCACCACCACACAACACCA
CACAGACACCACAACTTTGGGGAGCGTCAGTGGCACCAAGTTTGGCGTCC
CCACAAGCGACAAGGTAAGCACTTATTTGCCCCCCTTCAGCAAAATCCTT
CGCGCACGATTGACACACAACCGCTTTTCCGGCCCAAAACTTTAACACAC
CTAGATCACACAACACCACCAGCACCATGGCAGAAGGCGCTCTTTTGGAT
CCCCAGAAGCTCTCGTTGTGCTATGCGAAGCTCTTTCAGAAACAACAAGT
CTTTGCCGCCCAGCAGGCCGCAGTCTTTGCCAAGCTGGCCGCTGGGGACA
AGGCTACCCTCGAAGCTGTGCTGAAGCTGCCCGACGCACAGCCCTCCCCG
GAGGAGGCGAACGGAGCGGGAAATGGGAAGAAGCGCAAGGCGAAGCGGGA
TCCGGACTTGCCGAAACGGCCCAAGAGCGGGTACCAGTTTTATGTCTGTG
AGCACACCCCGACGCTGCGTGCGGCCCAGCCAGAGGCCAAGATGAAGGAG
CTCATGGGGGTGCTAGCTAACGACTGGAAAAAGCTGAGCGAAGAGGAGAA
GGAAAAGTATCAGAAGCTTGCAGTGGAGGAGAAGACAGTGTACCAGGACA
AGATGGATAGCTACAAGGCCAACAAAACCGGCGGCGGTGGTGGGGGGGAG
GGAGGAGCCGCTGTCAAGGCGACTGCCCCGGTGATGGCGTCGGCCAAGGA
TGCAGAGGAGCAGGAGGAGGAAGAGGACACAGAGTCAGACACGTCAGAGG
AGAAAGAGGTGAAGAAGTCCAAGAAGAAGAAACACAAGAAGCACAAGAAG
CACCACGACAAGACCCGAGAAGAGTCCTAAAACAGGGAGAAGGCCACGAA
AGGGACGCTGAGAATGGGATAAAATGGGGACTATGCGTTTATTTTTCGGT
CGGGTTATGCACATGATACGATTGTGGGAAGTATATTTTTTCTACTACAA
CATCAACAACAACAGTACCCACTCCCACACCACACACCGAACGGTCCAGC
TAGAGATGAAAGAAACAGGAAAGAGAACGCCACGTCAAGGCCCAAAACAG
TATGGCTTGTCAGTGTCGTCTTTCCACGAGCATATTGTGCGAATGTGTGA
ATGTAAGAGAGAAAGAAGCTAAGAGGAAAAAGCCATGACAGAAGATCGCC
CAGCTGCTGATGGAAAGGAAAATAAGGAACAAAAGAAAGTTTCAGTCGTC
ATCCTCCTCCCACGGGATGAAACGTGAGCGAAAGAAATGACAGACA
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Coding sequence (CDS) from alignment at chr5:596862..598357+

>NO05G02240.2 ID=NO05G02240.2|Name=NO05G02240.2|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr5:596862..598357+ (Nannochloropsis oceanica)
ATGCGTCCGCAATGCCTTTGTTTTCTCTTGTACTTGTGTAACTGTGTAAG
GAAGGAGAAGACACCACAACTTTGGGGAGCGTCAGTGGCACCAAGTTTGG
CGTCCCCACAAGCGACAAGCACCATGGCAGAAGGCGCTCTTTTGGATCCC
CAGAAGCTCTCGTTGTGCTATGCGAAGCTCTTTCAGAAACAACAAGTCTT
TGCCGCCCAGCAGGCCGCAGTCTTTGCCAAGCTGGCCGCTGGGGACAAGG
CTACCCTCGAAGCTGTGCTGAAGCTGCCCGACGCACAGCCCTCCCCGGAG
GAGGCGAACGGAGCGGGAAATGGGAAGAAGCGCAAGGCGAAGCGGGATCC
GGACTTGCCGAAACGGCCCAAGAGCGGGTACCAGTTTTATGTCTGTGAGC
ACACCCCGACGCTGCGTGCGGCCCAGCCAGAGGCCAAGATGAAGGAGCTC
ATGGGGGTGCTAGCTAACGACTGGAAAAAGCTGAGCGAAGAGGAGAAGGA
AAAGTATCAGAAGCTTGCAGTGGAGGAGAAGACAGTGTACCAGGACAAGA
TGGATAGCTACAAGGCCAACAAAACCGGCGGCGGTGGTGGGGGGGAGGGA
GGAGCCGCTGTCAAGGCGACTGCCCCGGTGATGGCGTCGGCCAAGGATGC
AGAGGAGCAGGAGGAGGAAGAGGACACAGAGTCAGACACGTCAGAGGAGA
AAGAGGTGAAGAAGTCCAAGAAGAAGAAACACAAGAAGCACAAGAAGCAC
CACGACAAGACCCGAGAAGAGTCCTAA
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Synonyms
Publications