NO05G02240.1, NO05G02240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02240.1
Unique NameNO05G02240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1211
Alignment locationchr5:596862..598357 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:596862..598357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G02240.1 vs.
Match: EWM28234.1 (high mobility group protein b3 [Nannochloropsis gaditana])

HSP 1 Score: 242.3 bits (617), Expect = 1.700e-60
Identity = 151/217 (69.59%), Postives = 172/217 (79.26%), Query Frame = 0
Query:   54 LDPQKLSLCYAKLFQKQQVFAAQQAAVFAKLAAGDKATLEAVLKLPDAQPSPEEANGAGNGKKRKA-KRDPDLPKRPKSGYQFYVCEHTPTLRAAQPEAKMKELMGVLANDWKKLSEEEKEKYQKLAVEEKTVYQDKMDSYKANKTGGGGGGEGGAAVKA-TAPVMASAKDAEEQEEEED----TESDTSEEKEVKKSKKKKHKKHKKHHDKTREES 265
            LD QKL+LC+AKLFQKQ  FAAQ AA+FAKLAAGD+ATLEAVL LP+ +   EE NG   GKKR+A KRDPDLPKRPKSGYQ YVCE TPTLRA QPEAKM ELM VLANDWK L+EEEKEKYQKLAV+EKT+YQDK+  YKAN++G GGGG    AV+  TA    SAK  + ++E ED    TESD+  EKE+KK+KKKKHKKHKKH DK REE+
Sbjct:   12 LDFQKLALCFAKLFQKQAAFAAQHAAIFAKLAAGDEATLEAVLNLPE-EKCTEETNG---GKKRRAAKRDPDLPKRPKSGYQLYVCEKTPTLRAEQPEAKMTELMTVLANDWKNLNEEEKEKYQKLAVKEKTLYQDKLADYKANQSGSGGGGGATNAVEGETAKPSTSAKIEKGEDEGEDHRDNTESDSESEKEMKKAKKKKHKKHKKHRDKAREEA 224          
The following BLAST results are available for this feature:
BLAST of NO05G02240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28234.11.700e-6069.59high mobility group protein b3 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02240NO05G02240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02240.1NO05G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02240.1.cds1NO05G02240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02240.1.cds2NO05G02240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02240.1.cds3NO05G02240.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02240.1 ID=NO05G02240.1|Name=NO05G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1211bp
ATGCGTCCGCAATGCCTTTGTTTTCTCTTGTACTTGTGTAACTGTGTAAG
GAAGGAGAAGACACCACAACTTTGGGGAGCGTCAGTGGCACCAAGTTTGG
CGTCCCCACAAGCGACAAGATCACACAACACCACCAGCACCATGGCAGAA
GGCGCTCTTTTGGATCCCCAGAAGCTCTCGTTGTGCTATGCGAAGCTCTT
TCAGAAACAACAAGTCTTTGCCGCCCAGCAGGCCGCAGTCTTTGCCAAGC
TGGCCGCTGGGGACAAGGCTACCCTCGAAGCTGTGCTGAAGCTGCCCGAC
GCACAGCCCTCCCCGGAGGAGGCGAACGGAGCGGGAAATGGGAAGAAGCG
CAAGGCGAAGCGGGATCCGGACTTGCCGAAACGGCCCAAGAGCGGGTACC
AGTTTTATGTCTGTGAGCACACCCCGACGCTGCGTGCGGCCCAGCCAGAG
GCCAAGATGAAGGAGCTCATGGGGGTGCTAGCTAACGACTGGAAAAAGCT
GAGCGAAGAGGAGAAGGAAAAGTATCAGAAGCTTGCAGTGGAGGAGAAGA
CAGTGTACCAGGACAAGATGGATAGCTACAAGGCCAACAAAACCGGCGGC
GGTGGTGGGGGGGAGGGAGGAGCCGCTGTCAAGGCGACTGCCCCGGTGAT
GGCGTCGGCCAAGGATGCAGAGGAGCAGGAGGAGGAAGAGGACACAGAGT
CAGACACGTCAGAGGAGAAAGAGGTGAAGAAGTCCAAGAAGAAGAAACAC
AAGAAGCACAAGAAGCACCACGACAAGACCCGAGAAGAGTCCTAAAACAG
GGAGAAGGCCACGAAAGGGACGCTGAGAATGGGATAAAATGGGGACTATG
CGTTTATTTTTCGGTCGGGTTATGCACATGATACGATTGTGGGAAGTATA
TTTTTTCTACTACAACATCAACAACAACAGTACCCACTCCCACACCACAC
ACCGAACGGTCCAGCTAGAGATGAAAGAAACAGGAAAGAGAACGCCACGT
CAAGGCCCAAAACAGTATGGCTTGTCAGTGTCGTCTTTCCACGAGCATAT
TGTGCGAATGTGTGAATGTAAGAGAGAAAGAAGCTAAGAGGAAAAAGCCA
TGACAGAAGATCGCCCAGCTGCTGATGGAAAGGAAAATAAGGAACAAAAG
AAAGTTTCAGTCGTCATCCTCCTCCCACGGGATGAAACGTGAGCGAAAGA
AATGACAGACA
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protein sequence of NO05G02240.1

>NO05G02240.1-protein ID=NO05G02240.1-protein|Name=NO05G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MRPQCLCFLLYLCNCVRKEKTPQLWGASVAPSLASPQATRSHNTTSTMAE
GALLDPQKLSLCYAKLFQKQQVFAAQQAAVFAKLAAGDKATLEAVLKLPD
AQPSPEEANGAGNGKKRKAKRDPDLPKRPKSGYQFYVCEHTPTLRAAQPE
AKMKELMGVLANDWKKLSEEEKEKYQKLAVEEKTVYQDKMDSYKANKTGG
GGGGEGGAAVKATAPVMASAKDAEEQEEEEDTESDTSEEKEVKKSKKKKH
KKHKKHHDKTREES*
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mRNA from alignment at chr5:596862..598357+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02240.1 ID=NO05G02240.1|Name=NO05G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1496bp|location=Sequence derived from alignment at chr5:596862..598357+ (Nannochloropsis oceanica)
ATGCGTCCGCAATGCCTTTGTTTTCTCTTGTACTTGTGTAACTGTGTAAG GAAGGAGAAGGTAAACGAGAGGGTGAGACATGGGCGCAGTCGTAAAGCAA CTTTGGGCATGGGAGCCGCCTGCGTTTCGACGAACAAGAAGCACGAGATA GAGATCATCTATGACGATCAATGATGTTCTCTCTGTTGTGGAGTAGTTGC TTTACAGTGTCGCTCAAAGATACCAGCCCATCCACCACCACACAACACCA CACAGACACCACAACTTTGGGGAGCGTCAGTGGCACCAAGTTTGGCGTCC CCACAAGCGACAAGGTAAGCACTTATTTGCCCCCCTTCAGCAAAATCCTT CGCGCACGATTGACACACAACCGCTTTTCCGGCCCAAAACTTTAACACAC CTAGATCACACAACACCACCAGCACCATGGCAGAAGGCGCTCTTTTGGAT CCCCAGAAGCTCTCGTTGTGCTATGCGAAGCTCTTTCAGAAACAACAAGT CTTTGCCGCCCAGCAGGCCGCAGTCTTTGCCAAGCTGGCCGCTGGGGACA AGGCTACCCTCGAAGCTGTGCTGAAGCTGCCCGACGCACAGCCCTCCCCG GAGGAGGCGAACGGAGCGGGAAATGGGAAGAAGCGCAAGGCGAAGCGGGA TCCGGACTTGCCGAAACGGCCCAAGAGCGGGTACCAGTTTTATGTCTGTG AGCACACCCCGACGCTGCGTGCGGCCCAGCCAGAGGCCAAGATGAAGGAG CTCATGGGGGTGCTAGCTAACGACTGGAAAAAGCTGAGCGAAGAGGAGAA GGAAAAGTATCAGAAGCTTGCAGTGGAGGAGAAGACAGTGTACCAGGACA AGATGGATAGCTACAAGGCCAACAAAACCGGCGGCGGTGGTGGGGGGGAG GGAGGAGCCGCTGTCAAGGCGACTGCCCCGGTGATGGCGTCGGCCAAGGA TGCAGAGGAGCAGGAGGAGGAAGAGGACACAGAGTCAGACACGTCAGAGG AGAAAGAGGTGAAGAAGTCCAAGAAGAAGAAACACAAGAAGCACAAGAAG CACCACGACAAGACCCGAGAAGAGTCCTAAAACAGGGAGAAGGCCACGAA AGGGACGCTGAGAATGGGATAAAATGGGGACTATGCGTTTATTTTTCGGT CGGGTTATGCACATGATACGATTGTGGGAAGTATATTTTTTCTACTACAA CATCAACAACAACAGTACCCACTCCCACACCACACACCGAACGGTCCAGC TAGAGATGAAAGAAACAGGAAAGAGAACGCCACGTCAAGGCCCAAAACAG TATGGCTTGTCAGTGTCGTCTTTCCACGAGCATATTGTGCGAATGTGTGA ATGTAAGAGAGAAAGAAGCTAAGAGGAAAAAGCCATGACAGAAGATCGCC CAGCTGCTGATGGAAAGGAAAATAAGGAACAAAAGAAAGTTTCAGTCGTC ATCCTCCTCCCACGGGATGAAACGTGAGCGAAAGAAATGACAGACA
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Coding sequence (CDS) from alignment at chr5:596862..598357+

>NO05G02240.1 ID=NO05G02240.1|Name=NO05G02240.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr5:596862..598357+ (Nannochloropsis oceanica)
ATGCGTCCGCAATGCCTTTGTTTTCTCTTGTACTTGTGTAACTGTGTAAG
GAAGGAGAAGACACCACAACTTTGGGGAGCGTCAGTGGCACCAAGTTTGG
CGTCCCCACAAGCGACAAGATCACACAACACCACCAGCACCATGGCAGAA
GGCGCTCTTTTGGATCCCCAGAAGCTCTCGTTGTGCTATGCGAAGCTCTT
TCAGAAACAACAAGTCTTTGCCGCCCAGCAGGCCGCAGTCTTTGCCAAGC
TGGCCGCTGGGGACAAGGCTACCCTCGAAGCTGTGCTGAAGCTGCCCGAC
GCACAGCCCTCCCCGGAGGAGGCGAACGGAGCGGGAAATGGGAAGAAGCG
CAAGGCGAAGCGGGATCCGGACTTGCCGAAACGGCCCAAGAGCGGGTACC
AGTTTTATGTCTGTGAGCACACCCCGACGCTGCGTGCGGCCCAGCCAGAG
GCCAAGATGAAGGAGCTCATGGGGGTGCTAGCTAACGACTGGAAAAAGCT
GAGCGAAGAGGAGAAGGAAAAGTATCAGAAGCTTGCAGTGGAGGAGAAGA
CAGTGTACCAGGACAAGATGGATAGCTACAAGGCCAACAAAACCGGCGGC
GGTGGTGGGGGGGAGGGAGGAGCCGCTGTCAAGGCGACTGCCCCGGTGAT
GGCGTCGGCCAAGGATGCAGAGGAGCAGGAGGAGGAAGAGGACACAGAGT
CAGACACGTCAGAGGAGAAAGAGGTGAAGAAGTCCAAGAAGAAGAAACAC
AAGAAGCACAAGAAGCACCACGACAAGACCCGAGAAGAGTCCTAA
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Synonyms
Publications