NO05G02200, NO05G02200 (gene) Nannochloropsis oceanica

Overview
NameNO05G02200
Unique NameNO05G02200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3392
Alignment locationchr5:587748..591139 -

Link to JBrowse

Properties
Property NameValue
DescriptionTHUMP domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:587748..591139 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR004114THUMP
Vocabulary: Biological Process
TermDefinition
GO:0006400tRNA modification
Homology
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BLAST of NO05G02200 vs. NCBI_GenBank
Match: EWM28292.1 (THUMP domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 231.9 bits (590), Expect = 4.000e-57
Identity = 130/256 (50.78%), Postives = 157/256 (61.33%), Query Frame = 0 
Query:  200 MATVETGCKGTCGISIPRNGHLSPVELCLRMLEEAKAGHSSTRCVTFLVSSHDKTFSSTLHEAHSAQFPNRGIVKLMPLERISFGGDLEAIKVQVRDLLHEKGLLLKNQKEEQVSGIRGEGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGKGADEAKRPTYMVSLCRRNYAAHTRDEIFEALGDVIDGRWKVDLKNPDHVILIEAIKGTIGFSICPRFIELKKYNLRQLQDQAREKAKTAR-KEHVEKEE 455
            M  +ETGC+GTCG+SIP++G LSPV+ C+RMLEEAK G SST                            RGI+KLMPLERI FGG+LEA+K + RDLL EKGL++  +KEE      G+                                  + K  D + RPTYMVSLCRRNYAAH+RDEIF+ LGDVI GRWKVDL  PD+V+L+EAIKGTIG  ICPRFIELKKYNLRQLQD+AR++ +  + K   EK E
Sbjct:    1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAKTGQSST----------------------------RGIIKLMPLERICFGGNLEALKREARDLLLEKGLIV--EKEEHAEKASGQ-----------------------------IGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIGGRWKVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQDEARKEDQALQGKIRAEKRE 197
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BLAST of NO05G02200 vs. NCBI_GenBank
Match: OIW26548.1 (hypothetical protein CONLIGDRAFT_634815 [Coniochaeta ligniaria NRRL 30616])

HSP 1 Score: 65.1 bits (157), Expect = 6.500e-7
Identity = 83/374 (22.19%), Postives = 142/374 (37.97%), Query Frame = 0 
Query:   96 SSWSSSLQAVRNG----------QAILFTCDVGREAKAAKEMYVVLERYAEEAKGSGTPGSRESTDDEDEVPAAMAAVTDSAEIETMANESVRASLLQEIAELKKEKRKGAKTTMATVETGCKGTCGISIPRNGHLSPVELCLRMLEEAKAGHSSTRCVTFLVSSHDKTFSSTLHEAHSAQFPNRGIVKLMPLERISFGGDLEAIKVQVRDLLHEKGLLLKNQKEEQVSGIRGEGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGKGADEAKRP-TYMVSLCRRNYAAHTRDEIFEALGDVIDG-RWKVDLKNPDHVILIEAIKGTIGFSIC--PRFIELKKYNLRQLQDQAREKAKTARKEHVEKEEE 456
            + W +S Q  + G            I  +C   +E KAA+E+  + E YAE   G   PG  ++ +D++E                   E + AS+ +E+  +K   ++                C + +     + PVE   R+ ++AK+G   TR                      +++ NR +V +  + + +  G LE  +  + D+    G   K   ++  +G + E                                  DG    EA RP ++ +    RN     RD I   +  +I+  + KVDL+ PD VIL+E  +  +G SI     + ELKKYNL +L  QA  + +   K   + + E
Sbjct:   29 NKWKTSHQQTKEGLLEGIVSPGEMGIWVSCARSQEGKAAREVVAMFEEYAEILYGVKQPGEEDAANDDEE-------------------EDIEASVKRELDAMKATGKEAKAAGRIFTPVKMNVACLLFVRTRSPIEPVEFVKRICQDAKSGEQRTR----------------------SRYVNR-LVPMTAVGKATEPGLLELARKVLGDVFDLSG---KRAGDDATTGAKQE------------KVDTTETGSSEAKNADDAEVKSDG---PEAHRPCSFAIRPSIRNNNTLKRDVIINQVAGLINNQQHKVDLEKPDKVILVEVYQNAVGMSIVDGDYWNELKKYNLTELYSQANNQGQEEGKPSAQADNE 342
The following BLAST results are available for this feature:
BLAST of NO05G02200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28292.14.000e-5750.78THUMP domain-containing protein [Nannochloropsis g... [more]
OIW26548.16.500e-722.19hypothetical protein CONLIGDRAFT_634815 [Coniochae... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003645NSK003645Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02200.7NO05G02200.7-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02200.6NO05G02200.6-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02200.5NO05G02200.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02200.4NO05G02200.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02200.3NO05G02200.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02200.2NO05G02200.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G02200.1NO05G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02200.7NO05G02200.7Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02200.6NO05G02200.6Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02200.5NO05G02200.5Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02200.4NO05G02200.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02200.3NO05G02200.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02200.2NO05G02200.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G02200.1NO05G02200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100004g142gene2390Nannochloropsis gaditana (N. gaditana B-31)gene
jgi.p|Nanoce1779_2|584213gene_3021Nannochloropsis oceanica (N. oceanica CCMP1779)gene


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02200 ID=NO05G02200|Name=NO05G02200|organism=Nannochloropsis oceanica|type=gene|length=3392bp
GCTCCTTGCTCTTATATACTTCTTTCTTTTTTACAACATTCTATTTTCAC
CTTGCTTGTGCATGCGCCGTAATGCGATATCTCTTTCTGACCTCTTGCTG
GATCTCGCATCTCGATGTATTCACCCCCTCTACTGCCCCGTTGTCAAGCT
TGATAAGCCGCACGGTGCACTTGGTTAATGCTGCATTACTCTTTGCTCGA
AAGACCGTGCCAGAAGGAAAATAAGCGGAGGACGACGGGGAAGACACGCA
CGCGAGGTCGTCAAGTGGAAAATCGGACGGTGACGGCTTGTTTTGAATAG
AGAGGCTTGCACGGAACGTGTGTGACCGGCCAGGTAGCATCTCCATGCGT
GGCGGGCAGAGCCAATGGAAGAAAGGTGGTGTCCAGCTCACGCTTGTCGG
CATGGCACTTATGACATCTGGACCGAGCTCAAAGCCAGGCATATGGACTT
CAACGGTCACGGACATGGCAGAAAGAGGGACGTAGAGGTTGCAATTGCTC
GTCACCACGACGATGATATGTGCTACATCTCCCTCCACACTAATTTTGCT
TGGTTGCAAGCGGACAGGCAGCGGCCGAACAGTGGATTTGGTCGTGTACC
GCAACAAGTTGAGAGGCAGAGCAACATTGTCCGTGGTGCACGGAAGACGG
CAAATAAATTTCGTGGGAGAAGGGACGGGGGGTGAGAATGACGCCAAGGG
CGACGACGTCTCAGGTATAGGTCCAGCATTAGCGCGCATAGGTGAAACCC
AAGGCCGGAGAACCACAGCATTCGATTTGATCGTTTCGATTTGGGACGCG
GCATCGACAAGCTCGACGCCTATTTCGAGAGGCTGCTTTGACGCAGCAGG
GCCGCCAGCATAAGATGTGACCTGGACAGTACCTGTAAGCGACAAACAGA
TGTCGCTTTCTCCAAAATTCATGCTCAGGTCTTCCAGGATTACCACTGTA
GCCTTCAGGGGCGGCGGGTCAAGCAGCGATTCTACTTTTGCCATGATCAA
GGGGGATAGGTTGATCTCCAAGGACGCCGCGATACGGGCGGGGAGGAGGG
GTGACGACTGCAGGGGTGGAGAGTTGACCTGTATGCTGGAGGGGCCACCG
TTCTCGGTGTTTGAGGCTTCAGAAAGGTTGACTGCACCTGGACGAAGACA
AGATCGCACCACAGGGACCTCCACATAGTCAAAGGACCCTCCAAATACAT
TTGGAAAGGGCTTAGCGTCCCAGTGAGGAGCTGGTATAGTCAGGACACGG
GCACAATGCCCACCCACAGTGCACAGTGACGATGCGGTCTGGAGCTGCGA
GTCGATGCTCCGGCGAGCACGACGGCCCTCCATACTGCTGCTCGTTATAG
AAGGGATGGTGAAGAAGAGGGAGAAGGCTTAGTGACTCGGTTGAACTCGG
AGCCTTTGGTGTAATAATGCATTTGATGGGCCAAGCAGCATGACAGGTCA
ACATGCGCAACGGCAACGGCTTCCACTTTTGAGCAGGTCACCTCGACGGT
CGCTGCACGCTCCTGTCTTCACAAATTCACACCCTTCTCAACCTCCACCG
CGAACCAAAACATATCCCAACAGGACAAGGAGAAGCTGGGCCGGCACTTT
CATCCGGACGTGCTCCTCTTTTCGCTTCCAACTCGTCATGGCAGACAACT
CAAAGCGGCCGTTGgtaagtgatgctgctgatgatgatcccaggggcgga
ggagagaggaggtcgagaatgaacgccgcagcacctgtacgtcaatcaac
tcaccggccatccactgccataatacaagAAGGGCTATGGTGGAGGAGGT
GGGGCCGGTGGTGGCTATAAGCGCCCACGATACCAGTCCTCGTCTTGGTC
ATCGTCGTTGCAGGCGGTGCGGAACGGGCAGGCTATCCTCTTCACGTGCG
ACGTGGGCCGGGAGGCCAAAGCAGCCAAGGAGATGTATGTCGTCCTAGAA
CGGgttagtcatcctgttttgtggaggacggaggatacggcagaatggca
acgatagcatgcttgctgcagtagcacagtcgaatcgatgttctctcgta
aaacaaagccagtccccctgcacaattctcctggcaaagcaagattctcc
tatttatgtaaaaaaaaatcctgaaatttggtatttttctcgccccttta
ctcaccacgcactcaccttacctcacaaacagTATGCGGAAGAAGCAAAA
GGCTCCGGCACACCTGGCAGCAGAGAGTCTACGGACGACGAGGATGAAGT
CCCCGCTGCCATGGCCGCCGTCACAGACTCTGCTGAGATTGAAACCATGG
CCAATGAAAGCGTTCGGGCCTCGCTTCTGCAAGAAATCGCAGAACTGAAG
AAGGAAAAGAGGAAGGGGGCCAAGACGACTATGGCCACGGTCGAGACCGG
CTGCAAGGGCACATGTGGGATCAGCATCCCCAGAAACGGGCATTTGTCCC
CCGTTGAACTGTGCCTGCGCATGCTAGAGGAAGCTAAAGCAGGGCACAGT
AGTACTCGgtgcgtgacgtttctcgtttccagccatgataaaactttctc
ttccactcttcacgaagcacactctgcccaattccctaacagAGGCATCG
TCAAGCTGATGCCGTTGGAGCGGATCAGCTTCGGGGGGGACTTAGAAGCC
ATCAAGGTACAAGTACGGGATTTACTGCACGAGAAAGGCCTCCTGCTCAA
AAATCAAAAAGAAGAACAAGTGTCGGGAATCAGGGGAGAAGGAACAGCAG
CAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
GCAGCAGCAGTAGCAGCAGCAGCAGCACCGCCAGGCGCGGAGGACGGGAA
AGGGGCCGACGAGGCCAAGAGGCCCACGgtgcgtagcaaaataaaatatt
ttcatgtaaccaaagccaagttaaatatcatcccctcattcacccttagT
ATATGGTAAGTTTGTGTCGACGCAACTACGCCGCCCACACTCGCGACGAG
ATATTCGAAGCGCTGGGTGACGTGATTGATGGCAGGTGGAAGGTGGACTT
GAAGAACCCGGACCATGTCATCCTCATAGAGGCCATAAAGgtaagaaggc
cgaggaggctgagctgagggtggagaagggggatagggaaaggccatgta
ctgggtgtgtcattttgcagttgcgatgtcttcatcctgctctctgaatt
ttctttttttggcccacctcttaacgatacagGGTACAATCGGCTTTAGT
ATTTGCCCGCGTTTCATCGAGCTGAAGAAGTACAATCTCCGTCAGCTCCA
AGACCAGGCCCGTGAAAAGGCCAAGACAGCGCGGAAAGAGCACGTGGAAA
AGGAAGAGGAATAGATCAAGTTAGAAATAAACAGACATCACT
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protein sequence of NO05G02200.7

>NO05G02200.7-protein ID=NO05G02200.7-protein|Name=NO05G02200.7|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MLAAVAQSNRCSLVKQSQSPCTILLAKQDSPIYVKKNPEIWYFSRPFTHH
ALTLPHKQYAEEAKGSGTPGSRESTDDEDEVPAAMAAVTDSAEIETMANE
SVRASLLQEIAELKKEKRKGAKTTMATVETGCKGTCGISIPRNGHLSPVE
LCLRMLEEAKAGHSSTRCVTFLVSSHDKTFSSTLHEAHSAQFPNRGIVKL
MPLERISFGGDLEAIKVQVRDLLHEKGLLLKNQKEEQVSGIRGEGTAAAT
TTTTTTTTTTTTTTAAAVAAAAAPPGAEDGKGADEAKRPTVRSKIKYFHV
TKAKLNIIPSFTLSIW*
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protein sequence of NO05G02200.6

>NO05G02200.6-protein ID=NO05G02200.6-protein|Name=NO05G02200.6|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MLAAVAQSNRCSLVKQSQSPCTILLAKQDSPIYVKKNPEIWYFSRPFTHH
ALTLPHKQYAEEAKGSGTPGSRESTDDEDEVPAAMAAVTDSAEIETMANE
SVRASLLQEIAELKKEKRKGAKTTMATVETGCKGTCGISIPRNGHLSPVE
LCLRMLEEAKAGHSSTRGIVKLMPLERISFGGDLEAIKVQVRDLLHEKGL
LLKNQKEEQVSGIRGEGTAAATTTTTTTTTTTTTTTAAAVAAAAAPPGAE
DGKGADEAKRPTYMVSLCRRNYAAHTRDEIFEALGDVIDGRWKVDLKNPD
HVILIEAIKGTIGFSICPRFIELKKYNLRQLQDQAREKAKTARKEHVEKE
EE*
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protein sequence of NO05G02200.5

>NO05G02200.5-protein ID=NO05G02200.5-protein|Name=NO05G02200.5|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MYVVLERYAEEAKGSGTPGSRESTDDEDEVPAAMAAVTDSAEIETMANES
VRASLLQEIAELKKEKRKGAKTTMATVETGCKGTCGISIPRNGHLSPVEL
CLRMLEEAKAGHSSTRCVTFLVSSHDKTFSSTLHEAHSAQFPNRGIVKLM
PLERISFGGDLEAIKVQVRDLLHEKGLLLKNQKEEQVSGIRGEGTAAATT
TTTTTTTTTTTTTAAAVAAAAAPPGAEDGKGADEAKRPTYMVSLCRRNYA
AHTRDEIFEALGDVIDGRWKVDLKNPDHVILIEAIKGTIGFSICPRFIEL
KKYNLRQLQDQAREKAKTARKEHVEKEEE*
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protein sequence of NO05G02200.4

>NO05G02200.4-protein ID=NO05G02200.4-protein|Name=NO05G02200.4|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MTGQHAQRQRLPLLSRSPRRSLHAPVFTNSHPSQPPPRTKTYPNRTRRSW
AGTFIRTCSSFRFQLVMADNSKRPLKGYGGGGGAGGGYKRPRYQSSSWSS
SLQAVRNGQAILFTCDVGREAKAAKEMYVVLERYAEEAKGSGTPGSREST
DDEDEVPAAMAAVTDSAEIETMANESVRASLLQEIAELKKEKRKGAKTTM
ATVETGCKGTCGISIPRNGHLSPVELCLRMLEEAKAGHSSTRCVTFLVSS
HDKTFSSTLHEAHSAQFPNRGIVKLMPLERISFGGDLEAIKVQVRDLLHE
KGLLLKNQKEEQVSGIRGEGTAAATTTTTTTTTTTTTTTAAAVAAAAAPP
GAEDGKGADEAKRPTYMVSLCRRNYAAHTRDEIFEALGDVIDGRWKVDLK
NPDHVILIEAIKGTIGFSICPRFIELKKYNLRQLQDQAREKAKTARKEHV
EKEEE*
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protein sequence of NO05G02200.3

>NO05G02200.3-protein ID=NO05G02200.3-protein|Name=NO05G02200.3|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MTGQHAQRQRLPLLSRSPRRSLHAPVFTNSHPSQPPPRTKTYPNRTRRSW
AGTFIRTCSSFRFQLVMADNSKRPLYAEEAKGSGTPGSRESTDDEDEVPA
AMAAVTDSAEIETMANESVRASLLQEIAELKKEKRKGAKTTMATVETGCK
GTCGISIPRNGHLSPVELCLRMLEEAKAGHSSTRGIVKLMPLERISFGGD
LEAIKVQVRDLLHEKGLLLKNQKEEQVSGIRGEGTAAATTTTTTTTTTTT
TTTAAAVAAAAAPPGAEDGKGADEAKRPTYMVSLCRRNYAAHTRDEIFEA
LGDVIDGRWKVDLKNPDHVILIEAIKGTIGFSICPRFIELKKYNLRQLQD
QAREKAKTARKEHVEKEEE*
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protein sequence of NO05G02200.2

>NO05G02200.2-protein ID=NO05G02200.2-protein|Name=NO05G02200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MYVVLERYAEEAKGSGTPGSRESTDDEDEVPAAMAAVTDSAEIETMANES
VRASLLQEIAELKKEKRKGAKTTMATVETGCKGTCGISIPRNGHLSPVEL
CLRMLEEAKAGHSSTRGIVKLMPLERISFGGDLEAIKVQVRDLLHEKGLL
LKNQKEEQVSGIRGEGTAAATTTTTTTTTTTTTTTAAAVAAAAAPPGAED
GKGADEAKRPTYMVSLCRRNYAAHTRDEIFEALGDVIDGRWKVDLKNPDH
VILIEAIKGTIGFSICPRFIELKKYNLRQLQDQAREKAKTARKEHVEKEE
E*
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protein sequence of NO05G02200.1

>NO05G02200.1-protein ID=NO05G02200.1-protein|Name=NO05G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MTGQHAQRQRLPLLSRSPRRSLHAPVFTNSHPSQPPPRTKTYPNRTRRSW
AGTFIRTCSSFRFQLVMADNSKRPLKGYGGGGGAGGGYKRPRYQSSSWSS
SLQAVRNGQAILFTCDVGREAKAAKEMYVVLERYAEEAKGSGTPGSREST
DDEDEVPAAMAAVTDSAEIETMANESVRASLLQEIAELKKEKRKGAKTTM
ATVETGCKGTCGISIPRNGHLSPVELCLRMLEEAKAGHSSTRGIVKLMPL
ERISFGGDLEAIKVQVRDLLHEKGLLLKNQKEEQVSGIRGEGTAAATTTT
TTTTTTTTTTTAAAVAAAAAPPGAEDGKGADEAKRPTYMVSLCRRNYAAH
TRDEIFEALGDVIDGRWKVDLKNPDHVILIEAIKGTIGFSICPRFIELKK
YNLRQLQDQAREKAKTARKEHVEKEEE*
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Synonyms
Publications