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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:587748..591139 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02200.7 vs.
Match: EWM28292.1 (THUMP domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 109.0 bits (271), Expect = 2.700e-20 Identity = 59/117 (50.43%), Postives = 74/117 (63.25%), Query Frame = 0
Query: 125 MATVETGCKGTCGISIPRNGHLSPVELCLRMLEEAKAGHSSTRCVTFLVSSHDKTFSSTLHEAHSAQFPNRGIVKLMPLERISFGGDLEAIKVQVRDLLHEKGLLL-KNQKEEQVSG 241
M +ETGC+GTCG+SIP++G LSPV+ C+RMLEEAK G SST RGI+KLMPLERI FGG+LEA+K + RDLL EKGL++ K + E+ SG
Sbjct: 1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAKTGQSST----------------------------RGIIKLMPLERICFGGNLEALKREARDLLLEKGLIVEKEEHAEKASG 89
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02200.7 ID=NO05G02200.7|Name=NO05G02200.7|organism=Nannochloropsis oceanica|type=mRNA|length=3250bp GCTCCTTGCTCTTATATACTTCTTTCTTTTTTACAACATTCTATTTTCAC CTTGCTTGTGCATGCGCCGTAATGCGATATCTCTTTCTGACCTCTTGCTG GATCTCGCATCTCGATGTATTCACCCCCTCTACTGCCCCGTTGTCAAGCT TGATAAGCCGCACGGTGCACTTGGTTAATGCTGCATTACTCTTTGCTCGA AAGACCGTGCCAGAAGGAAAATAAGCGGAGGACGACGGGGAAGACACGCA CGCGAGGTCGTCAAGTGGAAAATCGGACGGTGACGGCTTGTTTTGAATAG AGAGGCTTGCACGGAACGTGTGTGACCGGCCAGGTAGCATCTCCATGCGT GGCGGGCAGAGCCAATGGAAGAAAGGTGGTGTCCAGCTCACGCTTGTCGG CATGGCACTTATGACATCTGGACCGAGCTCAAAGCCAGGCATATGGACTT CAACGGTCACGGACATGGCAGAAAGAGGGACGTAGAGGTTGCAATTGCTC GTCACCACGACGATGATATGTGCTACATCTCCCTCCACACTAATTTTGCT TGGTTGCAAGCGGACAGGCAGCGGCCGAACAGTGGATTTGGTCGTGTACC GCAACAAGTTGAGAGGCAGAGCAACATTGTCCGTGGTGCACGGAAGACGG CAAATAAATTTCGTGGGAGAAGGGACGGGGGGTGAGAATGACGCCAAGGG CGACGACGTCTCAGGTATAGGTCCAGCATTAGCGCGCATAGGTGAAACCC AAGGCCGGAGAACCACAGCATTCGATTTGATCGTTTCGATTTGGGACGCG GCATCGACAAGCTCGACGCCTATTTCGAGAGGCTGCTTTGACGCAGCAGG GCCGCCAGCATAAGATGTGACCTGGACAGTACCTGTAAGCGACAAACAGA TGTCGCTTTCTCCAAAATTCATGCTCAGGTCTTCCAGGATTACCACTGTA GCCTTCAGGGGCGGCGGGTCAAGCAGCGATTCTACTTTTGCCATGATCAA GGGGGATAGGTTGATCTCCAAGGACGCCGCGATACGGGCGGGGAGGAGGG GTGACGACTGCAGGGGTGGAGAGTTGACCTGTATGCTGGAGGGGCCACCG TTCTCGGTGTTTGAGGCTTCAGAAAGGTTGACTGCACCTGGACGAAGACA AGATCGCACCACAGGGACCTCCACATAGTCAAAGGACCCTCCAAATACAT TTGGAAAGGGCTTAGCGTCCCAGTGAGGAGCTGGTATAGTCAGGACACGG GCACAATGCCCACCCACAGTGCACAGTGACGATGCGGTCTGGAGCTGCGA GTCGATGCTCCGGCGAGCACGACGGCCCTCCATACTGCTGCTCGTTATAG AAGGGATGGTGAAGAAGAGGGAGAAGGCTTAGTGACTCGGTTGAACTCGG AGCCTTTGGTGTAATAATGCATTTGATGGGCCAAGCAGCATGACAGGTCA ACATGCGCAACGGCAACGGCTTCCACTTTTGAGCAGGTCACCTCGACGGT CGCTGCACGCTCCTGTCTTCACAAATTCACACCCTTCTCAACCTCCACCG CGAACCAAAACATATCCCAACAGGACAAGGAGAAGCTGGGCCGGCACTTT CATCCGGACGTGCTCCTCTTTTCGCTTCCAACTCGTCATGGCAGACAACT CAAAGCGGCCGTTGGTAAGTGATGCTGCTGATGATGATCCCAGGGGCGGA GGAGAGAGGAGGTCGAGAATGAACGCCGCAGCACCTGTACGTCAATCAAC TCACCGGCCATCCACTGCCATAATACAAGAAGGGCTATGGTGGAGGAGGT GGGGCCGGTGGTGGCTATAAGCGCCCACGATACCAGTCCTCGTCTTGGTC ATCGTCGTTGCAGGCGGTGCGGAACGGGCAGGCTATCCTCTTCACGTGCG ACGTGGGCCGGGAGGCCAAAGCAGCCAAGGAGATGTATGTCGTCCTAGAA CGGGTTAGTCATCCTGTTTTGTGGAGGACGGAGGATACGGCAGAATGGCA ACGATAGCATGCTTGCTGCAGTAGCACAGTCGAATCGATGTTCTCTCGTA AAACAAAGCCAGTCCCCCTGCACAATTCTCCTGGCAAAGCAAGATTCTCC TATTTATGTAAAAAAAAATCCTGAAATTTGGTATTTTTCTCGCCCCTTTA CTCACCACGCACTCACCTTACCTCACAAACAGTATGCGGAAGAAGCAAAA GGCTCCGGCACACCTGGCAGCAGAGAGTCTACGGACGACGAGGATGAAGT CCCCGCTGCCATGGCCGCCGTCACAGACTCTGCTGAGATTGAAACCATGG CCAATGAAAGCGTTCGGGCCTCGCTTCTGCAAGAAATCGCAGAACTGAAG AAGGAAAAGAGGAAGGGGGCCAAGACGACTATGGCCACGGTCGAGACCGG CTGCAAGGGCACATGTGGGATCAGCATCCCCAGAAACGGGCATTTGTCCC CCGTTGAACTGTGCCTGCGCATGCTAGAGGAAGCTAAAGCAGGGCACAGT AGTACTCGGTGCGTGACGTTTCTCGTTTCCAGCCATGATAAAACTTTCTC TTCCACTCTTCACGAAGCACACTCTGCCCAATTCCCTAACAGAGGCATCG TCAAGCTGATGCCGTTGGAGCGGATCAGCTTCGGGGGGGACTTAGAAGCC ATCAAGGTACAAGTACGGGATTTACTGCACGAGAAAGGCCTCCTGCTCAA AAATCAAAAAGAAGAACAAGTGTCGGGAATCAGGGGAGAAGGAACAGCAG CAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA GCAGCAGCAGTAGCAGCAGCAGCAGCACCGCCAGGCGCGGAGGACGGGAA AGGGGCCGACGAGGCCAAGAGGCCCACGGTGCGTAGCAAAATAAAATATT TTCATGTAACCAAAGCCAAGTTAAATATCATCCCCTCATTCACCCTTAGT ATATGGTAAGTTTGTGTCGACGCAACTACGCCGCCCACACTCGCGACGAG ATATTCGAAGCGCTGGGTGACGTGATTGATGGCAGGTGGAAGGTGGACTT GAAGAACCCGGACCATGTCATCCTCATAGAGGCCATAAAGGGTACAATCG GCTTTAGTATTTGCCCGCGTTTCATCGAGCTGAAGAAGTACAATCTCCGT CAGCTCCAAGACCAGGCCCGTGAAAAGGCCAAGACAGCGCGGAAAGAGCA CGTGGAAAAGGAAGAGGAATAGATCAAGTTAGAAATAAACAGACATCACT back to topprotein sequence of NO05G02200.7 >NO05G02200.7-protein ID=NO05G02200.7-protein|Name=NO05G02200.7|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp MLAAVAQSNRCSLVKQSQSPCTILLAKQDSPIYVKKNPEIWYFSRPFTHH ALTLPHKQYAEEAKGSGTPGSRESTDDEDEVPAAMAAVTDSAEIETMANE SVRASLLQEIAELKKEKRKGAKTTMATVETGCKGTCGISIPRNGHLSPVE LCLRMLEEAKAGHSSTRCVTFLVSSHDKTFSSTLHEAHSAQFPNRGIVKL MPLERISFGGDLEAIKVQVRDLLHEKGLLLKNQKEEQVSGIRGEGTAAAT TTTTTTTTTTTTTTAAAVAAAAAPPGAEDGKGADEAKRPTVRSKIKYFHV TKAKLNIIPSFTLSIW* back to topmRNA from alignment at chr5:587748..591139- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02200.7 ID=NO05G02200.7|Name=NO05G02200.7|organism=Nannochloropsis oceanica|type=mRNA|length=3392bp|location=Sequence derived from alignment at chr5:587748..591139- (Nannochloropsis oceanica) GCTCCTTGCTCTTATATACTTCTTTCTTTTTTACAACATTCTATTTTCAC
CTTGCTTGTGCATGCGCCGTAATGCGATATCTCTTTCTGACCTCTTGCTG
GATCTCGCATCTCGATGTATTCACCCCCTCTACTGCCCCGTTGTCAAGCT
TGATAAGCCGCACGGTGCACTTGGTTAATGCTGCATTACTCTTTGCTCGA
AAGACCGTGCCAGAAGGAAAATAAGCGGAGGACGACGGGGAAGACACGCA
CGCGAGGTCGTCAAGTGGAAAATCGGACGGTGACGGCTTGTTTTGAATAG
AGAGGCTTGCACGGAACGTGTGTGACCGGCCAGGTAGCATCTCCATGCGT
GGCGGGCAGAGCCAATGGAAGAAAGGTGGTGTCCAGCTCACGCTTGTCGG
CATGGCACTTATGACATCTGGACCGAGCTCAAAGCCAGGCATATGGACTT
CAACGGTCACGGACATGGCAGAAAGAGGGACGTAGAGGTTGCAATTGCTC
GTCACCACGACGATGATATGTGCTACATCTCCCTCCACACTAATTTTGCT
TGGTTGCAAGCGGACAGGCAGCGGCCGAACAGTGGATTTGGTCGTGTACC
GCAACAAGTTGAGAGGCAGAGCAACATTGTCCGTGGTGCACGGAAGACGG
CAAATAAATTTCGTGGGAGAAGGGACGGGGGGTGAGAATGACGCCAAGGG
CGACGACGTCTCAGGTATAGGTCCAGCATTAGCGCGCATAGGTGAAACCC
AAGGCCGGAGAACCACAGCATTCGATTTGATCGTTTCGATTTGGGACGCG
GCATCGACAAGCTCGACGCCTATTTCGAGAGGCTGCTTTGACGCAGCAGG
GCCGCCAGCATAAGATGTGACCTGGACAGTACCTGTAAGCGACAAACAGA
TGTCGCTTTCTCCAAAATTCATGCTCAGGTCTTCCAGGATTACCACTGTA
GCCTTCAGGGGCGGCGGGTCAAGCAGCGATTCTACTTTTGCCATGATCAA
GGGGGATAGGTTGATCTCCAAGGACGCCGCGATACGGGCGGGGAGGAGGG
GTGACGACTGCAGGGGTGGAGAGTTGACCTGTATGCTGGAGGGGCCACCG
TTCTCGGTGTTTGAGGCTTCAGAAAGGTTGACTGCACCTGGACGAAGACA
AGATCGCACCACAGGGACCTCCACATAGTCAAAGGACCCTCCAAATACAT
TTGGAAAGGGCTTAGCGTCCCAGTGAGGAGCTGGTATAGTCAGGACACGG
GCACAATGCCCACCCACAGTGCACAGTGACGATGCGGTCTGGAGCTGCGA
GTCGATGCTCCGGCGAGCACGACGGCCCTCCATACTGCTGCTCGTTATAG
AAGGGATGGTGAAGAAGAGGGAGAAGGCTTAGTGACTCGGTTGAACTCGG
AGCCTTTGGTGTAATAATGCATTTGATGGGCCAAGCAGCATGACAGGTCA
ACATGCGCAACGGCAACGGCTTCCACTTTTGAGCAGGTCACCTCGACGGT
CGCTGCACGCTCCTGTCTTCACAAATTCACACCCTTCTCAACCTCCACCG
CGAACCAAAACATATCCCAACAGGACAAGGAGAAGCTGGGCCGGCACTTT
CATCCGGACGTGCTCCTCTTTTCGCTTCCAACTCGTCATGGCAGACAACT
CAAAGCGGCCGTTGGTAAGTGATGCTGCTGATGATGATCCCAGGGGCGGA
GGAGAGAGGAGGTCGAGAATGAACGCCGCAGCACCTGTACGTCAATCAAC
TCACCGGCCATCCACTGCCATAATACAAGAAGGGCTATGGTGGAGGAGGT
GGGGCCGGTGGTGGCTATAAGCGCCCACGATACCAGTCCTCGTCTTGGTC
ATCGTCGTTGCAGGCGGTGCGGAACGGGCAGGCTATCCTCTTCACGTGCG
ACGTGGGCCGGGAGGCCAAAGCAGCCAAGGAGATGTATGTCGTCCTAGAA
CGGGTTAGTCATCCTGTTTTGTGGAGGACGGAGGATACGGCAGAATGGCA
ACGATAGCATGCTTGCTGCAGTAGCACAGTCGAATCGATGTTCTCTCGTA
AAACAAAGCCAGTCCCCCTGCACAATTCTCCTGGCAAAGCAAGATTCTCC
TATTTATGTAAAAAAAAATCCTGAAATTTGGTATTTTTCTCGCCCCTTTA
CTCACCACGCACTCACCTTACCTCACAAACAGTATGCGGAAGAAGCAAAA
GGCTCCGGCACACCTGGCAGCAGAGAGTCTACGGACGACGAGGATGAAGT
CCCCGCTGCCATGGCCGCCGTCACAGACTCTGCTGAGATTGAAACCATGG
CCAATGAAAGCGTTCGGGCCTCGCTTCTGCAAGAAATCGCAGAACTGAAG
AAGGAAAAGAGGAAGGGGGCCAAGACGACTATGGCCACGGTCGAGACCGG
CTGCAAGGGCACATGTGGGATCAGCATCCCCAGAAACGGGCATTTGTCCC
CCGTTGAACTGTGCCTGCGCATGCTAGAGGAAGCTAAAGCAGGGCACAGT
AGTACTCGGTGCGTGACGTTTCTCGTTTCCAGCCATGATAAAACTTTCTC
TTCCACTCTTCACGAAGCACACTCTGCCCAATTCCCTAACAGAGGCATCG
TCAAGCTGATGCCGTTGGAGCGGATCAGCTTCGGGGGGGACTTAGAAGCC
ATCAAGGTACAAGTACGGGATTTACTGCACGAGAAAGGCCTCCTGCTCAA
AAATCAAAAAGAAGAACAAGTGTCGGGAATCAGGGGAGAAGGAACAGCAG
CAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
GCAGCAGCAGTAGCAGCAGCAGCAGCACCGCCAGGCGCGGAGGACGGGAA
AGGGGCCGACGAGGCCAAGAGGCCCACGGTGCGTAGCAAAATAAAATATT
TTCATGTAACCAAAGCCAAGTTAAATATCATCCCCTCATTCACCCTTAGT
ATATGGTAAGTTTGTGTCGACGCAACTACGCCGCCCACACTCGCGACGAG
ATATTCGAAGCGCTGGGTGACGTGATTGATGGCAGGTGGAAGGTGGACTT
GAAGAACCCGGACCATGTCATCCTCATAGAGGCCATAAAGGTAAGAAGGC
CGAGGAGGCTGAGCTGAGGGTGGAGAAGGGGGATAGGGAAAGGCCATGTA
CTGGGTGTGTCATTTTGCAGTTGCGATGTCTTCATCCTGCTCTCTGAATT
TTCTTTTTTTGGCCCACCTCTTAACGATACAGGGTACAATCGGCTTTAGT
ATTTGCCCGCGTTTCATCGAGCTGAAGAAGTACAATCTCCGTCAGCTCCA
AGACCAGGCCCGTGAAAAGGCCAAGACAGCGCGGAAAGAGCACGTGGAAA
AGGAAGAGGAATAGATCAAGTTAGAAATAAACAGACATCACT back to topCoding sequence (CDS) from alignment at chr5:587748..591139- >NO05G02200.7 ID=NO05G02200.7|Name=NO05G02200.7|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at chr5:587748..591139- (Nannochloropsis oceanica) ATGCTTGCTGCAGTAGCACAGTCGAATCGATGTTCTCTCGTAAAACAAAG CCAGTCCCCCTGCACAATTCTCCTGGCAAAGCAAGATTCTCCTATTTATG TAAAAAAAAATCCTGAAATTTGGTATTTTTCTCGCCCCTTTACTCACCAC GCACTCACCTTACCTCACAAACAGTATGCGGAAGAAGCAAAAGGCTCCGG CACACCTGGCAGCAGAGAGTCTACGGACGACGAGGATGAAGTCCCCGCTG CCATGGCCGCCGTCACAGACTCTGCTGAGATTGAAACCATGGCCAATGAA AGCGTTCGGGCCTCGCTTCTGCAAGAAATCGCAGAACTGAAGAAGGAAAA GAGGAAGGGGGCCAAGACGACTATGGCCACGGTCGAGACCGGCTGCAAGG GCACATGTGGGATCAGCATCCCCAGAAACGGGCATTTGTCCCCCGTTGAA CTGTGCCTGCGCATGCTAGAGGAAGCTAAAGCAGGGCACAGTAGTACTCG GTGCGTGACGTTTCTCGTTTCCAGCCATGATAAAACTTTCTCTTCCACTC TTCACGAAGCACACTCTGCCCAATTCCCTAACAGAGGCATCGTCAAGCTG ATGCCGTTGGAGCGGATCAGCTTCGGGGGGGACTTAGAAGCCATCAAGGT ACAAGTACGGGATTTACTGCACGAGAAAGGCCTCCTGCTCAAAAATCAAA AAGAAGAACAAGTGTCGGGAATCAGGGGAGAAGGAACAGCAGCAGCAACA ACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAGCAGC AGTAGCAGCAGCAGCAGCACCGCCAGGCGCGGAGGACGGGAAAGGGGCCG ACGAGGCCAAGAGGCCCACGGTGCGTAGCAAAATAAAATATTTTCATGTA ACCAAAGCCAAGTTAAATATCATCCCCTCATTCACCCTTAGTATATGGTA A back to top
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