NO05G02200.4, NO05G02200.4 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G02200.4
Unique Name	NO05G02200.4
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2835
Alignment location	chr5:587748..591139 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:587748..591139 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G02200.4 vs.
Match: EWM28292.1 (THUMP domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 229.6 bits (584), Expect = 2.000e-56
Identity = 132/257 (51.36%), Postives = 159/257 (61.87%), Query Frame = 0

Query:  200 MATVETGCKGTCGISIPRNGHLSPVELCLRMLEEAKAGHSSTRCVTFLVSSHDKTFSSTLHEAHSAQFPNRGIVKLMPLERISFGGDLEAIKVQVRDLLHEKGLLLKNQKEEQVSGIRGEGTAAATTTTTTTTTTTTTTTAAAVAAAAAPPGAE-DGKGADEAKRPTYMVSLCRRNYAAHTRDEIFEALGDVIDGRWKVDLKNPDHVILIEAIKGTIGFSICPRFIELKKYNLRQLQDQAREKAKTAR-KEHVEKEE 455
            M  +ETGC+GTCG+SIP++G LSPV+ C+RMLEEAK G SSTR                            GI+KLMPLERI FGG+LEA+K + RDLL EKGL++  +KEE      G+                               G E + K  D + RPTYMVSLCRRNYAAH+RDEIF+ LGDVI GRWKVDL  PD+V+L+EAIKGTIG  ICPRFIELKKYNLRQLQD+AR++ +  + K   EK E
Sbjct:    1 MVPIETGCRGTCGVSIPKDGPLSPVKACIRMLEEAKTGQSSTR----------------------------GIIKLMPLERICFGGNLEALKREARDLLLEKGLIV--EKEEHAEKASGQ------------------------------IGLESERKAVDSSSRPTYMVSLCRRNYAAHSRDEIFKTLGDVIGGRWKVDLTCPDYVLLVEAIKGTIGVGICPRFIELKKYNLRQLQDEARKEDQALQGKIRAEKRE 197

The following BLAST results are available for this feature:

BLAST of NO05G02200.4 vs.

BLAST of NO05G02200.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28292.1	2.000e-56	51.36	THUMP domain-containing protein [Nannochloropsis g...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G02200	NO05G02200	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02200.4	NO05G02200.4-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02200.4.cds1	NO05G02200.4.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02200.4.cds2	NO05G02200.4.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02200.4.cds3	NO05G02200.4.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02200.4.cds4	NO05G02200.4.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02200.4.cds5	NO05G02200.4.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:587748..591139-
coding sequence from alignment at chr5:587748..591139-

mRNA sequence

>NO05G02200.4 ID=NO05G02200.4|Name=NO05G02200.4|organism=Nannochloropsis oceanica|type=mRNA|length=2835bp
GCTCCTTGCTCTTATATACTTCTTTCTTTTTTACAACATTCTATTTTCAC
CTTGCTTGTGCATGCGCCGTAATGCGATATCTCTTTCTGACCTCTTGCTG
GATCTCGCATCTCGATGTATTCACCCCCTCTACTGCCCCGTTGTCAAGCT
TGATAAGCCGCACGGTGCACTTGGTTAATGCTGCATTACTCTTTGCTCGA
AAGACCGTGCCAGAAGGAAAATAAGCGGAGGACGACGGGGAAGACACGCA
CGCGAGGTCGTCAAGTGGAAAATCGGACGGTGACGGCTTGTTTTGAATAG
AGAGGCTTGCACGGAACGTGTGTGACCGGCCAGGTAGCATCTCCATGCGT
GGCGGGCAGAGCCAATGGAAGAAAGGTGGTGTCCAGCTCACGCTTGTCGG
CATGGCACTTATGACATCTGGACCGAGCTCAAAGCCAGGCATATGGACTT
CAACGGTCACGGACATGGCAGAAAGAGGGACGTAGAGGTTGCAATTGCTC
GTCACCACGACGATGATATGTGCTACATCTCCCTCCACACTAATTTTGCT
TGGTTGCAAGCGGACAGGCAGCGGCCGAACAGTGGATTTGGTCGTGTACC
GCAACAAGTTGAGAGGCAGAGCAACATTGTCCGTGGTGCACGGAAGACGG
CAAATAAATTTCGTGGGAGAAGGGACGGGGGGTGAGAATGACGCCAAGGG
CGACGACGTCTCAGGTATAGGTCCAGCATTAGCGCGCATAGGTGAAACCC
AAGGCCGGAGAACCACAGCATTCGATTTGATCGTTTCGATTTGGGACGCG
GCATCGACAAGCTCGACGCCTATTTCGAGAGGCTGCTTTGACGCAGCAGG
GCCGCCAGCATAAGATGTGACCTGGACAGTACCTGTAAGCGACAAACAGA
TGTCGCTTTCTCCAAAATTCATGCTCAGGTCTTCCAGGATTACCACTGTA
GCCTTCAGGGGCGGCGGGTCAAGCAGCGATTCTACTTTTGCCATGATCAA
GGGGGATAGGTTGATCTCCAAGGACGCCGCGATACGGGCGGGGAGGAGGG
GTGACGACTGCAGGGGTGGAGAGTTGACCTGTATGCTGGAGGGGCCACCG
TTCTCGGTGTTTGAGGCTTCAGAAAGGTTGACTGCACCTGGACGAAGACA
AGATCGCACCACAGGGACCTCCACATAGTCAAAGGACCCTCCAAATACAT
TTGGAAAGGGCTTAGCGTCCCAGTGAGGAGCTGGTATAGTCAGGACACGG
GCACAATGCCCACCCACAGTGCACAGTGACGATGCGGTCTGGAGCTGCGA
GTCGATGCTCCGGCGAGCACGACGGCCCTCCATACTGCTGCTCGTTATAG
AAGGGATGGTGAAGAAGAGGGAGAAGGCTTAGTGACTCGGTTGAACTCGG
AGCCTTTGGTGTAATAATGCATTTGATGGGCCAAGCAGCATGACAGGTCA
ACATGCGCAACGGCAACGGCTTCCACTTTTGAGCAGGTCACCTCGACGGT
CGCTGCACGCTCCTGTCTTCACAAATTCACACCCTTCTCAACCTCCACCG
CGAACCAAAACATATCCCAACAGGACAAGGAGAAGCTGGGCCGGCACTTT
CATCCGGACGTGCTCCTCTTTTCGCTTCCAACTCGTCATGGCAGACAACT
CAAAGCGGCCGTTGAAGGGCTATGGTGGAGGAGGTGGGGCCGGTGGTGGC
TATAAGCGCCCACGATACCAGTCCTCGTCTTGGTCATCGTCGTTGCAGGC
GGTGCGGAACGGGCAGGCTATCCTCTTCACGTGCGACGTGGGCCGGGAGG
CCAAAGCAGCCAAGGAGATGTATGTCGTCCTAGAACGGTATGCGGAAGAA
GCAAAAGGCTCCGGCACACCTGGCAGCAGAGAGTCTACGGACGACGAGGA
TGAAGTCCCCGCTGCCATGGCCGCCGTCACAGACTCTGCTGAGATTGAAA
CCATGGCCAATGAAAGCGTTCGGGCCTCGCTTCTGCAAGAAATCGCAGAA
CTGAAGAAGGAAAAGAGGAAGGGGGCCAAGACGACTATGGCCACGGTCGA
GACCGGCTGCAAGGGCACATGTGGGATCAGCATCCCCAGAAACGGGCATT
TGTCCCCCGTTGAACTGTGCCTGCGCATGCTAGAGGAAGCTAAAGCAGGG
CACAGTAGTACTCGGTGCGTGACGTTTCTCGTTTCCAGCCATGATAAAAC
TTTCTCTTCCACTCTTCACGAAGCACACTCTGCCCAATTCCCTAACAGAG
GCATCGTCAAGCTGATGCCGTTGGAGCGGATCAGCTTCGGGGGGGACTTA
GAAGCCATCAAGGTACAAGTACGGGATTTACTGCACGAGAAAGGCCTCCT
GCTCAAAAATCAAAAAGAAGAACAAGTGTCGGGAATCAGGGGAGAAGGAA
CAGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAGCAGCAGCAGTAGCAGCAGCAGCAGCACCGCCAGGCGCGGAGGA
CGGGAAAGGGGCCGACGAGGCCAAGAGGCCCACGTATATGGTAAGTTTGT
GTCGACGCAACTACGCCGCCCACACTCGCGACGAGATATTCGAAGCGCTG
GGTGACGTGATTGATGGCAGGTGGAAGGTGGACTTGAAGAACCCGGACCA
TGTCATCCTCATAGAGGCCATAAAGGGTACAATCGGCTTTAGTATTTGCC
CGCGTTTCATCGAGCTGAAGAAGTACAATCTCCGTCAGCTCCAAGACCAG
GCCCGTGAAAAGGCCAAGACAGCGCGGAAAGAGCACGTGGAAAAGGAAGA
GGAATAGATCAAGTTAGAAATAAACAGACATCACT

protein sequence of NO05G02200.4

>NO05G02200.4-protein ID=NO05G02200.4-protein|Name=NO05G02200.4|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MTGQHAQRQRLPLLSRSPRRSLHAPVFTNSHPSQPPPRTKTYPNRTRRSW
AGTFIRTCSSFRFQLVMADNSKRPLKGYGGGGGAGGGYKRPRYQSSSWSS
SLQAVRNGQAILFTCDVGREAKAAKEMYVVLERYAEEAKGSGTPGSREST
DDEDEVPAAMAAVTDSAEIETMANESVRASLLQEIAELKKEKRKGAKTTM
ATVETGCKGTCGISIPRNGHLSPVELCLRMLEEAKAGHSSTRCVTFLVSS
HDKTFSSTLHEAHSAQFPNRGIVKLMPLERISFGGDLEAIKVQVRDLLHE
KGLLLKNQKEEQVSGIRGEGTAAATTTTTTTTTTTTTTTAAAVAAAAAPP
GAEDGKGADEAKRPTYMVSLCRRNYAAHTRDEIFEALGDVIDGRWKVDLK
NPDHVILIEAIKGTIGFSICPRFIELKKYNLRQLQDQAREKAKTARKEHV
EKEEE*

mRNA from alignment at chr5:587748..591139-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G02200.4 ID=NO05G02200.4|Name=NO05G02200.4|organism=Nannochloropsis oceanica|type=mRNA|length=3392bp|location=Sequence derived from alignment at chr5:587748..591139- (Nannochloropsis oceanica)
GCTCCTTGCTCTTATATACTTCTTTCTTTTTTACAACATTCTATTTTCAC
CTTGCTTGTGCATGCGCCGTAATGCGATATCTCTTTCTGACCTCTTGCTG
GATCTCGCATCTCGATGTATTCACCCCCTCTACTGCCCCGTTGTCAAGCT
TGATAAGCCGCACGGTGCACTTGGTTAATGCTGCATTACTCTTTGCTCGA
AAGACCGTGCCAGAAGGAAAATAAGCGGAGGACGACGGGGAAGACACGCA
CGCGAGGTCGTCAAGTGGAAAATCGGACGGTGACGGCTTGTTTTGAATAG
AGAGGCTTGCACGGAACGTGTGTGACCGGCCAGGTAGCATCTCCATGCGT
GGCGGGCAGAGCCAATGGAAGAAAGGTGGTGTCCAGCTCACGCTTGTCGG
CATGGCACTTATGACATCTGGACCGAGCTCAAAGCCAGGCATATGGACTT
CAACGGTCACGGACATGGCAGAAAGAGGGACGTAGAGGTTGCAATTGCTC
GTCACCACGACGATGATATGTGCTACATCTCCCTCCACACTAATTTTGCT
TGGTTGCAAGCGGACAGGCAGCGGCCGAACAGTGGATTTGGTCGTGTACC
GCAACAAGTTGAGAGGCAGAGCAACATTGTCCGTGGTGCACGGAAGACGG
CAAATAAATTTCGTGGGAGAAGGGACGGGGGGTGAGAATGACGCCAAGGG
CGACGACGTCTCAGGTATAGGTCCAGCATTAGCGCGCATAGGTGAAACCC
AAGGCCGGAGAACCACAGCATTCGATTTGATCGTTTCGATTTGGGACGCG
GCATCGACAAGCTCGACGCCTATTTCGAGAGGCTGCTTTGACGCAGCAGG
GCCGCCAGCATAAGATGTGACCTGGACAGTACCTGTAAGCGACAAACAGA
TGTCGCTTTCTCCAAAATTCATGCTCAGGTCTTCCAGGATTACCACTGTA
GCCTTCAGGGGCGGCGGGTCAAGCAGCGATTCTACTTTTGCCATGATCAA
GGGGGATAGGTTGATCTCCAAGGACGCCGCGATACGGGCGGGGAGGAGGG
GTGACGACTGCAGGGGTGGAGAGTTGACCTGTATGCTGGAGGGGCCACCG
TTCTCGGTGTTTGAGGCTTCAGAAAGGTTGACTGCACCTGGACGAAGACA
AGATCGCACCACAGGGACCTCCACATAGTCAAAGGACCCTCCAAATACAT
TTGGAAAGGGCTTAGCGTCCCAGTGAGGAGCTGGTATAGTCAGGACACGG
GCACAATGCCCACCCACAGTGCACAGTGACGATGCGGTCTGGAGCTGCGA
GTCGATGCTCCGGCGAGCACGACGGCCCTCCATACTGCTGCTCGTTATAG
AAGGGATGGTGAAGAAGAGGGAGAAGGCTTAGTGACTCGGTTGAACTCGG
AGCCTTTGGTGTAATAATGCATTTGATGGGCCAAGCAGCATGACAGGTCA
ACATGCGCAACGGCAACGGCTTCCACTTTTGAGCAGGTCACCTCGACGGT
CGCTGCACGCTCCTGTCTTCACAAATTCACACCCTTCTCAACCTCCACCG
CGAACCAAAACATATCCCAACAGGACAAGGAGAAGCTGGGCCGGCACTTT
CATCCGGACGTGCTCCTCTTTTCGCTTCCAACTCGTCATGGCAGACAACT
CAAAGCGGCCGTTGGTAAGTGATGCTGCTGATGATGATCCCAGGGGCGGA
GGAGAGAGGAGGTCGAGAATGAACGCCGCAGCACCTGTACGTCAATCAAC
TCACCGGCCATCCACTGCCATAATACAAGAAGGGCTATGGTGGAGGAGGT
GGGGCCGGTGGTGGCTATAAGCGCCCACGATACCAGTCCTCGTCTTGGTC
ATCGTCGTTGCAGGCGGTGCGGAACGGGCAGGCTATCCTCTTCACGTGCG
ACGTGGGCCGGGAGGCCAAAGCAGCCAAGGAGATGTATGTCGTCCTAGAA
CGGGTTAGTCATCCTGTTTTGTGGAGGACGGAGGATACGGCAGAATGGCA
ACGATAGCATGCTTGCTGCAGTAGCACAGTCGAATCGATGTTCTCTCGTA
AAACAAAGCCAGTCCCCCTGCACAATTCTCCTGGCAAAGCAAGATTCTCC
TATTTATGTAAAAAAAAATCCTGAAATTTGGTATTTTTCTCGCCCCTTTA
CTCACCACGCACTCACCTTACCTCACAAACAGTATGCGGAAGAAGCAAAA
GGCTCCGGCACACCTGGCAGCAGAGAGTCTACGGACGACGAGGATGAAGT
CCCCGCTGCCATGGCCGCCGTCACAGACTCTGCTGAGATTGAAACCATGG
CCAATGAAAGCGTTCGGGCCTCGCTTCTGCAAGAAATCGCAGAACTGAAG
AAGGAAAAGAGGAAGGGGGCCAAGACGACTATGGCCACGGTCGAGACCGG
CTGCAAGGGCACATGTGGGATCAGCATCCCCAGAAACGGGCATTTGTCCC
CCGTTGAACTGTGCCTGCGCATGCTAGAGGAAGCTAAAGCAGGGCACAGT
AGTACTCGGTGCGTGACGTTTCTCGTTTCCAGCCATGATAAAACTTTCTC
TTCCACTCTTCACGAAGCACACTCTGCCCAATTCCCTAACAGAGGCATCG
TCAAGCTGATGCCGTTGGAGCGGATCAGCTTCGGGGGGGACTTAGAAGCC
ATCAAGGTACAAGTACGGGATTTACTGCACGAGAAAGGCCTCCTGCTCAA
AAATCAAAAAGAAGAACAAGTGTCGGGAATCAGGGGAGAAGGAACAGCAG
CAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
GCAGCAGCAGTAGCAGCAGCAGCAGCACCGCCAGGCGCGGAGGACGGGAA
AGGGGCCGACGAGGCCAAGAGGCCCACGGTGCGTAGCAAAATAAAATATT
TTCATGTAACCAAAGCCAAGTTAAATATCATCCCCTCATTCACCCTTAGT
ATATGGTAAGTTTGTGTCGACGCAACTACGCCGCCCACACTCGCGACGAG
ATATTCGAAGCGCTGGGTGACGTGATTGATGGCAGGTGGAAGGTGGACTT
GAAGAACCCGGACCATGTCATCCTCATAGAGGCCATAAAGGTAAGAAGGC
CGAGGAGGCTGAGCTGAGGGTGGAGAAGGGGGATAGGGAAAGGCCATGTA
CTGGGTGTGTCATTTTGCAGTTGCGATGTCTTCATCCTGCTCTCTGAATT
TTCTTTTTTTGGCCCACCTCTTAACGATACAGGGTACAATCGGCTTTAGT
ATTTGCCCGCGTTTCATCGAGCTGAAGAAGTACAATCTCCGTCAGCTCCA
AGACCAGGCCCGTGAAAAGGCCAAGACAGCGCGGAAAGAGCACGTGGAAA
AGGAAGAGGAATAGATCAAGTTAGAAATAAACAGACATCACT

Coding sequence (CDS) from alignment at chr5:587748..591139-

>NO05G02200.4 ID=NO05G02200.4|Name=NO05G02200.4|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at chr5:587748..591139- (Nannochloropsis oceanica)
ATGACAGGTCAACATGCGCAACGGCAACGGCTTCCACTTTTGAGCAGGTC
ACCTCGACGGTCGCTGCACGCTCCTGTCTTCACAAATTCACACCCTTCTC
AACCTCCACCGCGAACCAAAACATATCCCAACAGGACAAGGAGAAGCTGG
GCCGGCACTTTCATCCGGACGTGCTCCTCTTTTCGCTTCCAACTCGTCAT
GGCAGACAACTCAAAGCGGCCGTTGAAGGGCTATGGTGGAGGAGGTGGGG
CCGGTGGTGGCTATAAGCGCCCACGATACCAGTCCTCGTCTTGGTCATCG
TCGTTGCAGGCGGTGCGGAACGGGCAGGCTATCCTCTTCACGTGCGACGT
GGGCCGGGAGGCCAAAGCAGCCAAGGAGATGTATGTCGTCCTAGAACGGT
ATGCGGAAGAAGCAAAAGGCTCCGGCACACCTGGCAGCAGAGAGTCTACG
GACGACGAGGATGAAGTCCCCGCTGCCATGGCCGCCGTCACAGACTCTGC
TGAGATTGAAACCATGGCCAATGAAAGCGTTCGGGCCTCGCTTCTGCAAG
AAATCGCAGAACTGAAGAAGGAAAAGAGGAAGGGGGCCAAGACGACTATG
GCCACGGTCGAGACCGGCTGCAAGGGCACATGTGGGATCAGCATCCCCAG
AAACGGGCATTTGTCCCCCGTTGAACTGTGCCTGCGCATGCTAGAGGAAG
CTAAAGCAGGGCACAGTAGTACTCGGTGCGTGACGTTTCTCGTTTCCAGC
CATGATAAAACTTTCTCTTCCACTCTTCACGAAGCACACTCTGCCCAATT
CCCTAACAGAGGCATCGTCAAGCTGATGCCGTTGGAGCGGATCAGCTTCG
GGGGGGACTTAGAAGCCATCAAGGTACAAGTACGGGATTTACTGCACGAG
AAAGGCCTCCTGCTCAAAAATCAAAAAGAAGAACAAGTGTCGGGAATCAG
GGGAGAAGGAACAGCAGCAGCAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAGCAGCAGCAGTAGCAGCAGCAGCAGCACCGCCA
GGCGCGGAGGACGGGAAAGGGGCCGACGAGGCCAAGAGGCCCACGTATAT
GGTAAGTTTGTGTCGACGCAACTACGCCGCCCACACTCGCGACGAGATAT
TCGAAGCGCTGGGTGACGTGATTGATGGCAGGTGGAAGGTGGACTTGAAG
AACCCGGACCATGTCATCCTCATAGAGGCCATAAAGGGTACAATCGGCTT
TAGTATTTGCCCGCGTTTCATCGAGCTGAAGAAGTACAATCTCCGTCAGC
TCCAAGACCAGGCCCGTGAAAAGGCCAAGACAGCGCGGAAAGAGCACGTG
GAAAAGGAAGAGGAATAG

Synonyms

Publications