NO04G05100, NO04G05100 (gene) Nannochloropsis oceanica

Overview
NameNO04G05100
Unique NameNO04G05100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2393
Alignment locationchr4:1420599..1422991 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1420599..1422991 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO04G05100 vs. NCBI_GenBank
Match: EWM28933.1 (hypothetical protein Naga_100142g4 [Nannochloropsis gaditana])

HSP 1 Score: 373.6 bits (958), Expect = 5.000e-100
Identity = 183/251 (72.91%), Postives = 212/251 (84.46%), Query Frame = 0
Query:   20 AFVPPSSFSRAARTRV---NVHPPKNGIPVRPVTLDPKLVPIIYDGPKAEGGEVKREVGAILEEYMLALEVGPSSVVQGERGLYIRLIGKDVEESTVEWGSILCGYGEGSMQPLPGAGDKSVLFSLPTAESAVFYNKELVPIFEVLASLPDGTGLQGHDVSIGHKGLMQVKPVPDFTGDKYFVPKNGLPNKAAFIGLFANDLAIGGPNPPISKDEYEDASDMGNIAALVWRVVYDQDKKMVVPSRPVVTFG 268
            A +P ++F  + R R    N+H  K GI   P+ +DPK+VP+IYDGPKAEGGEVKREVGAILEEYMLALEVGPS+++  ERGLYIRLIGKDVEE+TVEWGSILCGYGEGSM+P PG GDKSVLFSLP+AE+AVFYNKELVPIFEVLA LPDGTGLQGH V++G +G ++V P+ D     YFVPK GLP KAAFIGLFANDLAIGGP+ P +K+EYE+ASD  NIAALVWRVVYD++K MV+PSRPVVTFG
Sbjct:   42 ALIPGNAFFLSHRMRKVSWNLHVAKTGISAMPLKVDPKVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKDVEEATVEWGSILCGYGEGSMEPSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQGHSVTVGARGAIEVAPLTD--EKSYFVPKAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAALVWRVVYDKEKGMVLPSRPVVTFG 290          
BLAST of NO04G05100 vs. NCBI_GenBank
Match: XP_005854025.1 (hypothetical protein NGA_0442400 [Nannochloropsis gaditana CCMP526] >EKU22335.1 hypothetical protein NGA_0442400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 303.1 bits (775), Expect = 8.400e-79
Identity = 152/209 (72.73%), Postives = 168/209 (80.38%), Query Frame = 0
Query:   36 NVHPPKNGIPVRPVTLDPKLVPIIYDGPKAEGGEVKREVGAILEEYMLALEVGPSSVVQGERGLYIRLIGKDVEESTVEWGSILCGYGEGSMQPLPGAGDKSVLFSLPTAESAVFYNKELVPIFEVLASLPDGTGLQGHDVSIGHKGLMQVKPVPDFTGDKYFVPKNGLPNKAAFIGLFANDLAIGGPNPPISKDEYEDASDMGNIAAL 245
            N+H  K GI   P+ +DPK+VP+IYDGPKAEGGEVKREVGAILEEYMLALEVGPS+++  ERGLYIRLIGKDVEE+TVEWGSILCGYGEGSM+P PG GDKSVLFSLP+AE+AVFYNKELVPIFEVLA LPDGTGLQG                       YFVPK GLP KAAFIGLFANDLAIGGP+ P +K+EYE+ASD  NIAAL
Sbjct:    7 NLHVAKTGISAMPLKVDPKVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKDVEEATVEWGSILCGYGEGSMEPSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQG-----------------------YFVPKAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAAL 192          
BLAST of NO04G05100 vs. NCBI_GenBank
Match: KOO24509.1 (hypothetical protein Ctob_002764 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 92.4 bits (228), Expect = 2.200e-15
Identity = 75/220 (34.09%), Postives = 109/220 (49.55%), Query Frame = 0
Query:   57 PIIYDGPKAEGGEVKREVGAILE--EYMLALEVGPSSVVQGE----RGLYIRLIGKDVEESTVEWGSILCGYGEGSMQPLPG-AGDKSVLFSLPTAESAVFYNKELVPIFEVLASLPDGTGLQGHD-VSIGHKGLMQ-VKPVPDFTGDKYFVPKNGLPNKAAF-IGLFANDLAIGGPNPPISKDEYEDASDMGNIAALVWRVVYDQDKKMVV-PSRPVVT 266
            P  Y GP    GE  R V   +E  E  L LEV  S    G+     GL++RL  + VE  T+  G  +CGY  G M   P   G K+V F L TA ++ F+ +EL  +  +LA+  D   + GH  V   H G +Q ++  P++ G +YFVP       +   IG F+NDLA+ G +   + D Y   S   N+  LV R+  + ++   + P+RPV T
Sbjct:   85 PPPYQGPTPAPGETLRGVVCSIELPEVGLILEVAESLASGGDGQAGLGLFVRL-AEGVESVTLNEGVAMCGYAHGQMMASPDELGGKTVGFWLKTALTSFFFERELHTVASLLATGADVEAIAGHTIVRDAHTGEVQAIEADPEWAGARYFVPHTDQGALSIMNIGQFSNDLAMPGASVN-AADGYGTDSSERNLLVLVQRMERNPERPSELRPTRPVST 302          
BLAST of NO04G05100 vs. NCBI_GenBank
Match: XP_005782536.1 (hypothetical protein EMIHUDRAFT_203578 [Emiliania huxleyi CCMP1516] >EOD30107.1 hypothetical protein EMIHUDRAFT_203578 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.0 bits (175), Expect = 3.100e-9
Identity = 59/190 (31.05%), Postives = 95/190 (50.00%), Query Frame = 0
Query:   61 DGPKAEGGEVKREVGAILEEYMLAL-EVGPSSVVQ-------------GERGLYIRL----IGKDVEESTVEWGSILCGYGEGSMQ-PLPGAGDKSVLFSLPTAESAVFYNKELVPIFEVLASLPDGTGLQGHDVSIGHKGLMQ-VKPVPDFTGDKYFVPKNGLPNKAAF-IGLFANDLAI-GGPNPPIS 229
            +G  +EGGEV   V    +E + AL + G + +VQ             G +GL   +    +G  V+  T+  G   CGY  G M+      G K+V F+L +A+++VF+ ++L  + ++LA       + GH+V     G +Q + P PD+ G +YFVP     + +   IG  +NDLAI   P+ P+S
Sbjct:   52 EGDLSEGGEVGASV--CDQEVLSALADGGEAQLVQAAPPVYDGPTPAKGLQGLVCSVELPEVGLGVDSVTLPAGVAFCGYAAGGMEMAADSEGGKTVGFALRSADTSVFFEQQLWSVADLLAPGSGVRHIAGHEVERDAGGRVQAISPDPDWGGARYFVPSREQGDLSIMNIGQMSNDLAIVARPSRPVS 239          
BLAST of NO04G05100 vs. NCBI_GenBank
Match: XP_005768595.1 (hypothetical protein EMIHUDRAFT_459195 [Emiliania huxleyi CCMP1516] >EOD16166.1 hypothetical protein EMIHUDRAFT_459195 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 69.3 bits (168), Expect = 2.000e-8
Identity = 43/129 (33.33%), Postives = 70/129 (54.26%), Query Frame = 0
Query:  104 IGKDVEESTVEWGSILCGYGEGSMQ-PLPGAGDKSVLFSLPTAESAVFYNKELVPIFEVLASLPDGTGLQGHDVSIGHKGLMQ-VKPVPDFTGDKYFVPKNGLPNKAAF-IGLFANDLAI-GGPNPPIS 229
            +G  V+  T+  G   CGY  G M+      G K+V F+L +A+++VF+ ++L  + ++LA       + GH+V     G +Q + P PD+ G +YFVP     + +   IG  +NDLAI   P+ P+S
Sbjct:  134 VGLGVDSVTLPAGVAFCGYAAGGMEMAADSEGGKTVGFALRSADTSVFFEQQLWSVADLLAPGSGVRHIAGHEVERDAGGRVQAISPDPDWGGARYFVPSREQGDLSIMNIGQMSNDLAIVARPSRPVS 262          
BLAST of NO04G05100 vs. NCBI_GenBank
Match: XP_005761029.1 (hypothetical protein EMIHUDRAFT_453047 [Emiliania huxleyi CCMP1516] >EOD08600.1 hypothetical protein EMIHUDRAFT_453047 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 68.2 bits (165), Expect = 4.500e-8
Identity = 61/196 (31.12%), Postives = 84/196 (42.86%), Query Frame = 0
Query:   83 LALEVGPSSVVQGERGLYIRLIGKDVEESTVEWGSILCGYGEGSMQPLPGAGDKSVLFSLPTAESAVFYNKELVPIFEVLASLPDGTGLQGHDVSIGHKGLMQVKPVPDFTGDKYFVPKNGLPNKAAF----IGLFANDLAI--GGPNPPISKDEYEDASDMGNIAALVW--------RVVYDQDKKMVVPSRPVV 265
            + L V  S +    +GL++ L     + +T+  G +LCGY + S       GDK+V F+   A+  V    E  P    +A     + L GH V     G   V  VPD    +  VP+ G P  +      +G FANDLA   G      +  EYE AS   N  +LVW        R   D    M+VPSR V+
Sbjct:   39 VTLAVQDSRLPGAGQGLFVSL-ADGADSATISSGEVLCGYCDESTLVDEATGDKAVPFAFGDAQKLVLLAGE-PPHTRAIAG-SGASSLHGHAVRRYGPGDAGVSVVPDSLTQRILVPRPGAPPASELGRGSLGQFANDLAFERGLLGRRHAALEYETASAASNSLSLVWELTLLPPRRGXXDAAGGMLVPSRVVL 231          
BLAST of NO04G05100 vs. NCBI_GenBank
Match: XP_005790207.1 (hypothetical protein EMIHUDRAFT_454777 [Emiliania huxleyi CCMP1516] >EOD37778.1 hypothetical protein EMIHUDRAFT_454777 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 68.2 bits (165), Expect = 4.500e-8
Identity = 61/196 (31.12%), Postives = 84/196 (42.86%), Query Frame = 0
Query:   83 LALEVGPSSVVQGERGLYIRLIGKDVEESTVEWGSILCGYGEGSMQPLPGAGDKSVLFSLPTAESAVFYNKELVPIFEVLASLPDGTGLQGHDVSIGHKGLMQVKPVPDFTGDKYFVPKNGLPNKAAF----IGLFANDLAI--GGPNPPISKDEYEDASDMGNIAALVW--------RVVYDQDKKMVVPSRPVV 265
            + L V  S +    +GL++ L     + +T+  G +LCGY + S       GDK+V F+   A+  V    E  P    +A     + L GH V     G   V  VPD    +  VP+ G P  +      +G FANDLA   G      +  EYE AS   N  +LVW        R   D    M+VPSR V+
Sbjct:   39 VTLAVQDSRLPGAGQGLFVSL-ADGADSATISSGEVLCGYCDESTLVDEATGDKAVPFAFGDAQKLVLLAGE-PPHTRAIAG-SGASSLHGHAVRRYGPGDAGVSVVPDSLTQRILVPRPGAPPASELGRGSLGQFANDLAFERGLLGRRHAALEYETASAASNSLSLVWELTLLPPRRGXXDAAGGMLVPSRVVL 231          
BLAST of NO04G05100 vs. NCBI_GenBank
Match: OEU06522.1 (hypothetical protein FRACYDRAFT_265870 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 65.9 bits (159), Expect = 2.200e-7
Identity = 67/249 (26.91%), Postives = 101/249 (40.56%), Query Frame = 0
Query:   60 YDGPKAEGGEVKREVGAILEEYMLALEVGPSSVVQGERGLYIRLIGKDVEESTVEW-----------------GSILCGYGEGSMQPLPGAGDKSVLFSLPTAES----AVFYNKELVPIFEVLASL------------------PDGTGLQGHDVSI-GHKGLMQVKPVPDFTGDKYFVPKNGLPNKAAF----IGLFANDLAIGGPNPPISKDEYEDASDMGNIAALVWRVVYDQDKKMVVPSRPVV 265
            Y GP   G     E G  +EE  L +  GPS V  G RGL++ +                             G+ +CGY  G        GDKSV F      S    AVFYN+ L+ + + + S+                         GH V +    G +++K   +F   + F+P    P ++ F    +G++ANDLA    +P  ++ +Y   S+  NI  LVWR+  D+    +VP+ PVV
Sbjct:   58 YVGP--VGNIADMEGGIAVEELALNVLTGPSLVASGGRGLFLCIYDXXXXXXXXXXXXXXXXXXXXXXXXXPQGTPICGYARGYFTD-QQEGDKSVGFLFNKENSANVTAVFYNQTLMTLGDAVWSVYNEEWRARAXXXXXXXXXXXXXXXFGHTVKVNAETGDIEIKADQEF-HSRIFIPDT--PEESQFAATSLGVYANDLAY---DPNSNETQYFINSEKNNILELVWRLAKDEITGTLVPTWPVV 297          
The following BLAST results are available for this feature:
BLAST of NO04G05100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM28933.15.000e-10072.91hypothetical protein Naga_100142g4 [Nannochloropsi... [more]
XP_005854025.18.400e-7972.73hypothetical protein NGA_0442400 [Nannochloropsis ... [more]
KOO24509.12.200e-1534.09hypothetical protein Ctob_002764 [Chrysochromulina... [more]
XP_005782536.13.100e-931.05hypothetical protein EMIHUDRAFT_203578 [Emiliania ... [more]
XP_005768595.12.000e-833.33hypothetical protein EMIHUDRAFT_459195 [Emiliania ... [more]
XP_005761029.14.500e-831.12hypothetical protein EMIHUDRAFT_453047 [Emiliania ... [more]
XP_005790207.14.500e-831.12hypothetical protein EMIHUDRAFT_454777 [Emiliania ... [more]
OEU06522.12.200e-726.91hypothetical protein FRACYDRAFT_265870 [Fragilario... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL075nonsL075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR107ngnoR107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007602NSK007602Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05100.1NO04G05100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G05100.2NO04G05100.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100142g4gene1685Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05100.1NO04G05100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G05100.2NO04G05100.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05100 ID=NO04G05100|Name=NO04G05100|organism=Nannochloropsis oceanica|type=gene|length=2393bp
CGGTAAAAAGCAATTGGATTTTTGCTGATCCATCCTGCTGTTGAATGCAA
CTTTGAACCCCACACCCAAAACCCAAGTCCCGCACATCCCCTCAGGAACA
AAAAATAAGGTCAAGGCGTTCCTAGATGTCATCGGGGCGTCCGCTACCCA
GGCTATTTGTTTGCATCATCACCGCATTGGTCCTCCACCCACCTAGTAAT
CCACCGAGCAATTCATTTATCTCACACTCACACATATCCACACTATGCAG
GTACAACTACAATCACGATGCGTGACTTTCTGCGCATCGCCATGGTGACC
ACCGCCATTGTCGCCCCTGTTCTTGCCTTCGTCCCGCCATCATCATTCTC
CCGTGCTGCCCGTACCCGCGTGAACGTACACCCTCCGAAGAACGGGATTC
CTGgtacgtggatgtagactttccttatttacatctcaatccattacatt
ttttactcgcggaatagcagcaaggatcgacgttagtttgctaatttatc
tcctcctccttccgctgtctcccacgcacaatatagTCCGACCGGTCACA
CTCGACCCCAAGCTAGTGCCAATCATCTACGACGGTCCCAAAGCAGAAGG
AGGAGAGGTTAAGAGGGAAGTCGGCGCCATTTTGGAGGAGTACATGTTGG
CGTTGGAGGTCGGTCCTTCTTCCGTTGTCCAAGGCGAGCGCGGGCTGTAC
ATTCGGCTGATTGGGAAAGACGTGGAGGAGTCGACGGTGGAGTGGGGAAG
CATTTTATGCGGATACGGAGAGGGCAGCATGCAGCCTCTGCCAGGAGCGG
GGGATAAGAGCGTGCTCTTCTCTCTGCCGACTGCTGAGTCCGCTGTATTT
TATAACAAAGAGgtagagagggagtgaaggtggcgggagggaggatactc
acacgaatgaaatttaactctccttccatcttttcctccctctttttccc
tccgttcttgccccttctacagTTAGTGCCCATATTCGAGGTGCTCGCGA
GTCTGCCTGACGGGACGGGTCTGCAAGGgtaaggatagatggagtggcaa
gaaggggcggaaggaaggcatgtaattgaagagtctcggagaggctgagt
ccggcgagctccttcttcttcttctctttcttcccaatgtccgtattcac
tctcactcacatctgtacttgcgtgcggtcccctacaccagGCACGACGT
CTCGATCGGGCATAAAGGCTTGATGCAGGTCAAGCCCGTGCCCGACTTTA
CCGGAGACAAgtaagtgtaacatggacacatgatagcgaggcgcctcttc
ccccccccccctccctccctctctttgcccctcctcctcctcccccagat
ccttcaaatttctttcaacacaagataactgacagctccgccttccttcc
ctctttcccttcctctttccctccctctttcccttcctctttccctccct
tcttccccccctccttccctccctcctttccttccctccctcctctccct
cccaccctcttgcagGTATTTCGTACCCAAAAATGGCCTTCCAAACAAGG
CGGCGTTTATCGGACTTTTCGCCAACGACCTGGCTATCGGCGGTCCCAAT
CCTCCCATAAGCAAAGACGAGTACGAAGATGCTTCCGgtatgtgtctgtg
accacgagcagcgtctcctttcctctccctgcccttccccccttctcccc
ctcttttctttgtggaggaagcggctcgaatacctcttcatcattttacc
ctgatttcccctctcttcctccctccctccatctcttctcccctcttcaa
gACATGGGTAATATTGCGGCCTTGGTGTGGCGTGTCGTGTATGACCAGGA
CAAGAAGATGGTGGTGCCCTCAAGACCGGTCGTGACGTTTGGgtaaggag
ggagggagggtggatggaagggagagagggaggttcaaagggggaaagga
atacggtttttgtatcgtggcagcgtctgagcaattaagaagccttaagt
gacactcgatgagtaatccatctactctatttggaagagaataggagggg
gggcgaaagtcggaaaataatttctgactccttacctcccgtatttcatt
ctccctccccttctcctttcctgtccggtcacaacaatcattatgaaaag
TCGAGCTGTCACGTTTCAGAACAAGGTGCCGATGGAGCTGGGATTGCGAT
ACGGCTGGCGGTTCTGGGAAAACATGGGAGAGAGTGTAGAGTAGAGAGGA
GTGCAATATTGACGTGCCAAAAAAACAGGAGAAACGGTCGAATGGTTCTA
GCCAAGGGAAGAAAAGAATATTCAGAAACAAAGAAAGAAAGTTACTTTTG
TTTAGTGACTGTTCTGAGACGCTTTTGGTGTCGAATATGGCAG
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protein sequence of NO04G05100.1

>NO04G05100.1-protein ID=NO04G05100.1-protein|Name=NO04G05100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MRDFLRIAMVTTAIVAPVLAFVPPSSFSRAARTRVNVHPPKNGIPVRPVT
LDPKLVPIIYDGPKAEGGEVKREVGAILEEYMLALEVGPSSVVQGERGLY
IRLIGKDVEESTVEWGSILCGYGEGSMQPLPGAGDKSVLFSLPTAESAVF
YNKELVPIFEVLASLPDGTGLQGHDVSIGHKGLMQVKPVPDFTGDKYFVP
KNGLPNKAAFIGLFANDLAIGGPNPPISKDEYEDASDMGNIAALVWRVVY
DQDKKMVVPSRPVVTFGRAVTFQNKVPMELGLRYGWRFWENMGESVE*
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protein sequence of NO04G05100.2

>NO04G05100.2-protein ID=NO04G05100.2-protein|Name=NO04G05100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MRDFLRIAMVTTAIVAPVLAFVPPSSFSRAARTRVNVHPPKNGIPVRPVT
LDPKLVPIIYDGPKAEGGEVKREVGAILEEYMLALEVGPSSVVQGERGLY
IRLIGKDVEESTVEWGSILCGYGEGSMQPLPGAGDKSVLFSLPTAESAVF
YNKELVPIFEVLASLPDGTGLQGHDVSIGHKGLMQVKPVPDFTGDKYFVP
KNGLPNKAAFIGLFANDLAIGGPNPPISKDEYEDASDMGNIAALVWRVVY
DQDKKMVVPSRPVVTFG*
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Synonyms
Publications