NO04G05100.2, NO04G05100.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05100.2
Unique NameNO04G05100.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1568
Alignment locationchr4:1420599..1422991 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1420599..1422991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G05100.2 vs.
Match: EWM28933.1 (hypothetical protein Naga_100142g4 [Nannochloropsis gaditana])

HSP 1 Score: 373.6 bits (958), Expect = 5.000e-100
Identity = 183/251 (72.91%), Postives = 212/251 (84.46%), Query Frame = 0 
Query:   20 AFVPPSSFSRAARTRV---NVHPPKNGIPVRPVTLDPKLVPIIYDGPKAEGGEVKREVGAILEEYMLALEVGPSSVVQGERGLYIRLIGKDVEESTVEWGSILCGYGEGSMQPLPGAGDKSVLFSLPTAESAVFYNKELVPIFEVLASLPDGTGLQGHDVSIGHKGLMQVKPVPDFTGDKYFVPKNGLPNKAAFIGLFANDLAIGGPNPPISKDEYEDASDMGNIAALVWRVVYDQDKKMVVPSRPVVTFG 268
            A +P ++F  + R R    N+H  K GI   P+ +DPK+VP+IYDGPKAEGGEVKREVGAILEEYMLALEVGPS+++  ERGLYIRLIGKDVEE+TVEWGSILCGYGEGSM+P PG GDKSVLFSLP+AE+AVFYNKELVPIFEVLA LPDGTGLQGH V++G +G ++V P+ D     YFVPK GLP KAAFIGLFANDLAIGGP+ P +K+EYE+ASD  NIAALVWRVVYD++K MV+PSRPVVTFG
Sbjct:   42 ALIPGNAFFLSHRMRKVSWNLHVAKTGISAMPLKVDPKVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKDVEEATVEWGSILCGYGEGSMEPSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQGHSVTVGARGAIEVAPLTD--EKSYFVPKAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAALVWRVVYDKEKGMVLPSRPVVTFG 290
The following BLAST results are available for this feature:
BLAST of NO04G05100.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28933.15.000e-10072.91hypothetical protein Naga_100142g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05100NO04G05100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05100.2NO04G05100.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05100.2.cds1NO04G05100.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05100.2.cds2NO04G05100.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05100.2.cds3NO04G05100.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05100.2.cds4NO04G05100.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05100.2.cds5NO04G05100.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05100.2.cds6NO04G05100.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05100.2 ID=NO04G05100.2|Name=NO04G05100.2|organism=Nannochloropsis oceanica|type=mRNA|length=1568bp
CGGTAAAAAGCAATTGGATTTTTGCTGATCCATCCTGCTGTTGAATGCAA
CTTTGAACCCCACACCCAAAACCCAAGTCCCGCACATCCCCTCAGGAACA
AAAAATAAGGTCAAGGCGTTCCTAGATGTCATCGGGGCGTCCGCTACCCA
GGCTATTTGTTTGCATCATCACCGCATTGGTCCTCCACCCACCTAGTAAT
CCACCGAGCAATTCATTTATCTCACACTCACACATATCCACACTATGCAG
GTACAACTACAATCACGATGCGTGACTTTCTGCGCATCGCCATGGTGACC
ACCGCCATTGTCGCCCCTGTTCTTGCCTTCGTCCCGCCATCATCATTCTC
CCGTGCTGCCCGTACCCGCGTGAACGTACACCCTCCGAAGAACGGGATTC
CTGTCCGACCGGTCACACTCGACCCCAAGCTAGTGCCAATCATCTACGAC
GGTCCCAAAGCAGAAGGAGGAGAGGTTAAGAGGGAAGTCGGCGCCATTTT
GGAGGAGTACATGTTGGCGTTGGAGGTCGGTCCTTCTTCCGTTGTCCAAG
GCGAGCGCGGGCTGTACATTCGGCTGATTGGGAAAGACGTGGAGGAGTCG
ACGGTGGAGTGGGGAAGCATTTTATGCGGATACGGAGAGGGCAGCATGCA
GCCTCTGCCAGGAGCGGGGGATAAGAGCGTGCTCTTCTCTCTGCCGACTG
CTGAGTCCGCTGTATTTTATAACAAAGAGTTAGTGCCCATATTCGAGGTG
CTCGCGAGTCTGCCTGACGGGACGGGTCTGCAAGGGCACGACGTCTCGAT
CGGGCATAAAGGCTTGATGCAGGTCAAGCCCGTGCCCGACTTTACCGGAG
ACAAGTATTTCGTACCCAAAAATGGCCTTCCAAACAAGGCGGCGTTTATC
GGACTTTTCGCCAACGACCTGGCTATCGGCGGTCCCAATCCTCCCATAAG
CAAAGACGAGTACGAAGATGCTTCCGACATGGGTAATATTGCGGCCTTGG
TGTGGCGTGTCGTGTATGACCAGGACAAGAAGATGGTGGTGCCCTCAAGA
CCGGTCGTGACGTTTGGGTAAGGAGGGAGGGAGGGTGGATGGAAGGGAGA
GAGGGAGGTTCAAAGGGGGAAAGGAATACGGTTTTTGTATCGTGGCAGCG
TCTGAGCAATTAAGAAGCCTTAAGTGACACTCGATGAGTAATCCATCTAC
TCTATTTGGAAGAGAATAGGAGGGGGGGCGAAAGTCGGAAAATAATTTCT
GACTCCTTACCTCCCGTATTTCATTCTCCCTCCCCTTCTCCTTTCCTGTC
CGGTCACAACAATCATTATGAAAAGTCGAGCTGTCACGTTTCAGAACAAG
GTGCCGATGGAGCTGGGATTGCGATACGGCTGGCGGTTCTGGGAAAACAT
GGGAGAGAGTGTAGAGTAGAGAGGAGTGCAATATTGACGTGCCAAAAAAA
CAGGAGAAACGGTCGAATGGTTCTAGCCAAGGGAAGAAAAGAATATTCAG
AAACAAAGAAAGAAAGTTACTTTTGTTTAGTGACTGTTCTGAGACGCTTT
TGGTGTCGAATATGGCAG
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protein sequence of NO04G05100.2

>NO04G05100.2-protein ID=NO04G05100.2-protein|Name=NO04G05100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MRDFLRIAMVTTAIVAPVLAFVPPSSFSRAARTRVNVHPPKNGIPVRPVT
LDPKLVPIIYDGPKAEGGEVKREVGAILEEYMLALEVGPSSVVQGERGLY
IRLIGKDVEESTVEWGSILCGYGEGSMQPLPGAGDKSVLFSLPTAESAVF
YNKELVPIFEVLASLPDGTGLQGHDVSIGHKGLMQVKPVPDFTGDKYFVP
KNGLPNKAAFIGLFANDLAIGGPNPPISKDEYEDASDMGNIAALVWRVVY
DQDKKMVVPSRPVVTFG*
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mRNA from alignment at chr4:1420599..1422991+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05100.2 ID=NO04G05100.2|Name=NO04G05100.2|organism=Nannochloropsis oceanica|type=mRNA|length=2393bp|location=Sequence derived from alignment at chr4:1420599..1422991+ (Nannochloropsis oceanica)
CGGTAAAAAGCAATTGGATTTTTGCTGATCCATCCTGCTGTTGAATGCAA
CTTTGAACCCCACACCCAAAACCCAAGTCCCGCACATCCCCTCAGGAACA
AAAAATAAGGTCAAGGCGTTCCTAGATGTCATCGGGGCGTCCGCTACCCA
GGCTATTTGTTTGCATCATCACCGCATTGGTCCTCCACCCACCTAGTAAT
CCACCGAGCAATTCATTTATCTCACACTCACACATATCCACACTATGCAG
GTACAACTACAATCACGATGCGTGACTTTCTGCGCATCGCCATGGTGACC
ACCGCCATTGTCGCCCCTGTTCTTGCCTTCGTCCCGCCATCATCATTCTC
CCGTGCTGCCCGTACCCGCGTGAACGTACACCCTCCGAAGAACGGGATTC
CTGGTACGTGGATGTAGACTTTCCTTATTTACATCTCAATCCATTACATT
TTTTACTCGCGGAATAGCAGCAAGGATCGACGTTAGTTTGCTAATTTATC
TCCTCCTCCTTCCGCTGTCTCCCACGCACAATATAGTCCGACCGGTCACA
CTCGACCCCAAGCTAGTGCCAATCATCTACGACGGTCCCAAAGCAGAAGG
AGGAGAGGTTAAGAGGGAAGTCGGCGCCATTTTGGAGGAGTACATGTTGG
CGTTGGAGGTCGGTCCTTCTTCCGTTGTCCAAGGCGAGCGCGGGCTGTAC
ATTCGGCTGATTGGGAAAGACGTGGAGGAGTCGACGGTGGAGTGGGGAAG
CATTTTATGCGGATACGGAGAGGGCAGCATGCAGCCTCTGCCAGGAGCGG
GGGATAAGAGCGTGCTCTTCTCTCTGCCGACTGCTGAGTCCGCTGTATTT
TATAACAAAGAGGTAGAGAGGGAGTGAAGGTGGCGGGAGGGAGGATACTC
ACACGAATGAAATTTAACTCTCCTTCCATCTTTTCCTCCCTCTTTTTCCC
TCCGTTCTTGCCCCTTCTACAGTTAGTGCCCATATTCGAGGTGCTCGCGA
GTCTGCCTGACGGGACGGGTCTGCAAGGGTAAGGATAGATGGAGTGGCAA
GAAGGGGCGGAAGGAAGGCATGTAATTGAAGAGTCTCGGAGAGGCTGAGT
CCGGCGAGCTCCTTCTTCTTCTTCTCTTTCTTCCCAATGTCCGTATTCAC
TCTCACTCACATCTGTACTTGCGTGCGGTCCCCTACACCAGGCACGACGT
CTCGATCGGGCATAAAGGCTTGATGCAGGTCAAGCCCGTGCCCGACTTTA
CCGGAGACAAGTAAGTGTAACATGGACACATGATAGCGAGGCGCCTCTTC
CCCCCCCCCCCTCCCTCCCTCTCTTTGCCCCTCCTCCTCCTCCCCCAGAT
CCTTCAAATTTCTTTCAACACAAGATAACTGACAGCTCCGCCTTCCTTCC
CTCTTTCCCTTCCTCTTTCCCTCCCTCTTTCCCTTCCTCTTTCCCTCCCT
TCTTCCCCCCCTCCTTCCCTCCCTCCTTTCCTTCCCTCCCTCCTCTCCCT
CCCACCCTCTTGCAGGTATTTCGTACCCAAAAATGGCCTTCCAAACAAGG
CGGCGTTTATCGGACTTTTCGCCAACGACCTGGCTATCGGCGGTCCCAAT
CCTCCCATAAGCAAAGACGAGTACGAAGATGCTTCCGGTATGTGTCTGTG
ACCACGAGCAGCGTCTCCTTTCCTCTCCCTGCCCTTCCCCCCTTCTCCCC
CTCTTTTCTTTGTGGAGGAAGCGGCTCGAATACCTCTTCATCATTTTACC
CTGATTTCCCCTCTCTTCCTCCCTCCCTCCATCTCTTCTCCCCTCTTCAA
GACATGGGTAATATTGCGGCCTTGGTGTGGCGTGTCGTGTATGACCAGGA
CAAGAAGATGGTGGTGCCCTCAAGACCGGTCGTGACGTTTGGGTAAGGAG
GGAGGGAGGGTGGATGGAAGGGAGAGAGGGAGGTTCAAAGGGGGAAAGGA
ATACGGTTTTTGTATCGTGGCAGCGTCTGAGCAATTAAGAAGCCTTAAGT
GACACTCGATGAGTAATCCATCTACTCTATTTGGAAGAGAATAGGAGGGG
GGGCGAAAGTCGGAAAATAATTTCTGACTCCTTACCTCCCGTATTTCATT
CTCCCTCCCCTTCTCCTTTCCTGTCCGGTCACAACAATCATTATGAAAAG
TCGAGCTGTCACGTTTCAGAACAAGGTGCCGATGGAGCTGGGATTGCGAT
ACGGCTGGCGGTTCTGGGAAAACATGGGAGAGAGTGTAGAGTAGAGAGGA
GTGCAATATTGACGTGCCAAAAAAACAGGAGAAACGGTCGAATGGTTCTA
GCCAAGGGAAGAAAAGAATATTCAGAAACAAAGAAAGAAAGTTACTTTTG
TTTAGTGACTGTTCTGAGACGCTTTTGGTGTCGAATATGGCAG
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Coding sequence (CDS) from alignment at chr4:1420599..1422991+

>NO04G05100.2 ID=NO04G05100.2|Name=NO04G05100.2|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at chr4:1420599..1422991+ (Nannochloropsis oceanica)
ATGCGTGACTTTCTGCGCATCGCCATGGTGACCACCGCCATTGTCGCCCC
TGTTCTTGCCTTCGTCCCGCCATCATCATTCTCCCGTGCTGCCCGTACCC
GCGTGAACGTACACCCTCCGAAGAACGGGATTCCTGTCCGACCGGTCACA
CTCGACCCCAAGCTAGTGCCAATCATCTACGACGGTCCCAAAGCAGAAGG
AGGAGAGGTTAAGAGGGAAGTCGGCGCCATTTTGGAGGAGTACATGTTGG
CGTTGGAGGTCGGTCCTTCTTCCGTTGTCCAAGGCGAGCGCGGGCTGTAC
ATTCGGCTGATTGGGAAAGACGTGGAGGAGTCGACGGTGGAGTGGGGAAG
CATTTTATGCGGATACGGAGAGGGCAGCATGCAGCCTCTGCCAGGAGCGG
GGGATAAGAGCGTGCTCTTCTCTCTGCCGACTGCTGAGTCCGCTGTATTT
TATAACAAAGAGTTAGTGCCCATATTCGAGGTGCTCGCGAGTCTGCCTGA
CGGGACGGGTCTGCAAGGGCACGACGTCTCGATCGGGCATAAAGGCTTGA
TGCAGGTCAAGCCCGTGCCCGACTTTACCGGAGACAAGTATTTCGTACCC
AAAAATGGCCTTCCAAACAAGGCGGCGTTTATCGGACTTTTCGCCAACGA
CCTGGCTATCGGCGGTCCCAATCCTCCCATAAGCAAAGACGAGTACGAAG
ATGCTTCCGACATGGGTAATATTGCGGCCTTGGTGTGGCGTGTCGTGTAT
GACCAGGACAAGAAGATGGTGGTGCCCTCAAGACCGGTCGTGACGTTTGG
GTAA
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Synonyms
Publications