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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1420599..1422991 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G05100.1 vs.
Match: EWM28933.1 (hypothetical protein Naga_100142g4 [Nannochloropsis gaditana]) HSP 1 Score: 392.1 bits (1006), Expect = 1.500e-105 Identity = 192/263 (73.00%), Postives = 223/263 (84.79%), Query Frame = 0
Query: 20 AFVPPSSFSRAARTRV---NVHPPKNGIPVRPVTLDPKLVPIIYDGPKAEGGEVKREVGAILEEYMLALEVGPSSVVQGERGLYIRLIGKDVEESTVEWGSILCGYGEGSMQPLPGAGDKSVLFSLPTAESAVFYNKELVPIFEVLASLPDGTGLQGHDVSIGHKGLMQVKPVPDFTGDKYFVPKNGLPNKAAFIGLFANDLAIGGPNPPISKDEYEDASDMGNIAALVWRVVYDQDKKMVVPSRPVVTFGRAVTFQNKVPME 280
A +P ++F + R R N+H K GI P+ +DPK+VP+IYDGPKAEGGEVKREVGAILEEYMLALEVGPS+++ ERGLYIRLIGKDVEE+TVEWGSILCGYGEGSM+P PG GDKSVLFSLP+AE+AVFYNKELVPIFEVLA LPDGTGLQGH V++G +G ++V P+ D YFVPK GLP KAAFIGLFANDLAIGGP+ P +K+EYE+ASD NIAALVWRVVYD++K MV+PSRPVVTFGR+VTF+NK PME
Sbjct: 42 ALIPGNAFFLSHRMRKVSWNLHVAKTGISAMPLKVDPKVVPVIYDGPKAEGGEVKREVGAILEEYMLALEVGPSTLLPDERGLYIRLIGKDVEEATVEWGSILCGYGEGSMEPSPGEGDKSVLFSLPSAEAAVFYNKELVPIFEVLADLPDGTGLQGHSVTVGARGAIEVAPLTD--EKSYFVPKAGLPAKAAFIGLFANDLAIGGPSAPATKEEYEEASDQKNIAALVWRVVYDKEKGMVLPSRPVVTFGRSVTFKNKEPME 302
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G05100.1 ID=NO04G05100.1|Name=NO04G05100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1310bp CGGTAAAAAGCAATTGGATTTTTGCTGATCCATCCTGCTGTTGAATGCAA CTTTGAACCCCACACCCAAAACCCAAGTCCCGCACATCCCCTCAGGAACA AAAAATAAGGTCAAGGCGTTCCTAGATGTCATCGGGGCGTCCGCTACCCA GGCTATTTGTTTGCATCATCACCGCATTGGTCCTCCACCCACCTAGTAAT CCACCGAGCAATTCATTTATCTCACACTCACACATATCCACACTATGCAG GTACAACTACAATCACGATGCGTGACTTTCTGCGCATCGCCATGGTGACC ACCGCCATTGTCGCCCCTGTTCTTGCCTTCGTCCCGCCATCATCATTCTC CCGTGCTGCCCGTACCCGCGTGAACGTACACCCTCCGAAGAACGGGATTC CTGTCCGACCGGTCACACTCGACCCCAAGCTAGTGCCAATCATCTACGAC GGTCCCAAAGCAGAAGGAGGAGAGGTTAAGAGGGAAGTCGGCGCCATTTT GGAGGAGTACATGTTGGCGTTGGAGGTCGGTCCTTCTTCCGTTGTCCAAG GCGAGCGCGGGCTGTACATTCGGCTGATTGGGAAAGACGTGGAGGAGTCG ACGGTGGAGTGGGGAAGCATTTTATGCGGATACGGAGAGGGCAGCATGCA GCCTCTGCCAGGAGCGGGGGATAAGAGCGTGCTCTTCTCTCTGCCGACTG CTGAGTCCGCTGTATTTTATAACAAAGAGTTAGTGCCCATATTCGAGGTG CTCGCGAGTCTGCCTGACGGGACGGGTCTGCAAGGGCACGACGTCTCGAT CGGGCATAAAGGCTTGATGCAGGTCAAGCCCGTGCCCGACTTTACCGGAG ACAAGTATTTCGTACCCAAAAATGGCCTTCCAAACAAGGCGGCGTTTATC GGACTTTTCGCCAACGACCTGGCTATCGGCGGTCCCAATCCTCCCATAAG CAAAGACGAGTACGAAGATGCTTCCGACATGGGTAATATTGCGGCCTTGG TGTGGCGTGTCGTGTATGACCAGGACAAGAAGATGGTGGTGCCCTCAAGA CCGGTCGTGACGTTTGGTCGAGCTGTCACGTTTCAGAACAAGGTGCCGAT GGAGCTGGGATTGCGATACGGCTGGCGGTTCTGGGAAAACATGGGAGAGA GTGTAGAGTAGAGAGGAGTGCAATATTGACGTGCCAAAAAAACAGGAGAA ACGGTCGAATGGTTCTAGCCAAGGGAAGAAAAGAATATTCAGAAACAAAG AAAGAAAGTTACTTTTGTTTAGTGACTGTTCTGAGACGCTTTTGGTGTCG AATATGGCAG back to topprotein sequence of NO04G05100.1 >NO04G05100.1-protein ID=NO04G05100.1-protein|Name=NO04G05100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp MRDFLRIAMVTTAIVAPVLAFVPPSSFSRAARTRVNVHPPKNGIPVRPVT LDPKLVPIIYDGPKAEGGEVKREVGAILEEYMLALEVGPSSVVQGERGLY IRLIGKDVEESTVEWGSILCGYGEGSMQPLPGAGDKSVLFSLPTAESAVF YNKELVPIFEVLASLPDGTGLQGHDVSIGHKGLMQVKPVPDFTGDKYFVP KNGLPNKAAFIGLFANDLAIGGPNPPISKDEYEDASDMGNIAALVWRVVY DQDKKMVVPSRPVVTFGRAVTFQNKVPMELGLRYGWRFWENMGESVE* back to topmRNA from alignment at chr4:1420599..1422991+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G05100.1 ID=NO04G05100.1|Name=NO04G05100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2393bp|location=Sequence derived from alignment at chr4:1420599..1422991+ (Nannochloropsis oceanica) CGGTAAAAAGCAATTGGATTTTTGCTGATCCATCCTGCTGTTGAATGCAA
CTTTGAACCCCACACCCAAAACCCAAGTCCCGCACATCCCCTCAGGAACA
AAAAATAAGGTCAAGGCGTTCCTAGATGTCATCGGGGCGTCCGCTACCCA
GGCTATTTGTTTGCATCATCACCGCATTGGTCCTCCACCCACCTAGTAAT
CCACCGAGCAATTCATTTATCTCACACTCACACATATCCACACTATGCAG
GTACAACTACAATCACGATGCGTGACTTTCTGCGCATCGCCATGGTGACC
ACCGCCATTGTCGCCCCTGTTCTTGCCTTCGTCCCGCCATCATCATTCTC
CCGTGCTGCCCGTACCCGCGTGAACGTACACCCTCCGAAGAACGGGATTC
CTGGTACGTGGATGTAGACTTTCCTTATTTACATCTCAATCCATTACATT
TTTTACTCGCGGAATAGCAGCAAGGATCGACGTTAGTTTGCTAATTTATC
TCCTCCTCCTTCCGCTGTCTCCCACGCACAATATAGTCCGACCGGTCACA
CTCGACCCCAAGCTAGTGCCAATCATCTACGACGGTCCCAAAGCAGAAGG
AGGAGAGGTTAAGAGGGAAGTCGGCGCCATTTTGGAGGAGTACATGTTGG
CGTTGGAGGTCGGTCCTTCTTCCGTTGTCCAAGGCGAGCGCGGGCTGTAC
ATTCGGCTGATTGGGAAAGACGTGGAGGAGTCGACGGTGGAGTGGGGAAG
CATTTTATGCGGATACGGAGAGGGCAGCATGCAGCCTCTGCCAGGAGCGG
GGGATAAGAGCGTGCTCTTCTCTCTGCCGACTGCTGAGTCCGCTGTATTT
TATAACAAAGAGGTAGAGAGGGAGTGAAGGTGGCGGGAGGGAGGATACTC
ACACGAATGAAATTTAACTCTCCTTCCATCTTTTCCTCCCTCTTTTTCCC
TCCGTTCTTGCCCCTTCTACAGTTAGTGCCCATATTCGAGGTGCTCGCGA
GTCTGCCTGACGGGACGGGTCTGCAAGGGTAAGGATAGATGGAGTGGCAA
GAAGGGGCGGAAGGAAGGCATGTAATTGAAGAGTCTCGGAGAGGCTGAGT
CCGGCGAGCTCCTTCTTCTTCTTCTCTTTCTTCCCAATGTCCGTATTCAC
TCTCACTCACATCTGTACTTGCGTGCGGTCCCCTACACCAGGCACGACGT
CTCGATCGGGCATAAAGGCTTGATGCAGGTCAAGCCCGTGCCCGACTTTA
CCGGAGACAAGTAAGTGTAACATGGACACATGATAGCGAGGCGCCTCTTC
CCCCCCCCCCCTCCCTCCCTCTCTTTGCCCCTCCTCCTCCTCCCCCAGAT
CCTTCAAATTTCTTTCAACACAAGATAACTGACAGCTCCGCCTTCCTTCC
CTCTTTCCCTTCCTCTTTCCCTCCCTCTTTCCCTTCCTCTTTCCCTCCCT
TCTTCCCCCCCTCCTTCCCTCCCTCCTTTCCTTCCCTCCCTCCTCTCCCT
CCCACCCTCTTGCAGGTATTTCGTACCCAAAAATGGCCTTCCAAACAAGG
CGGCGTTTATCGGACTTTTCGCCAACGACCTGGCTATCGGCGGTCCCAAT
CCTCCCATAAGCAAAGACGAGTACGAAGATGCTTCCGGTATGTGTCTGTG
ACCACGAGCAGCGTCTCCTTTCCTCTCCCTGCCCTTCCCCCCTTCTCCCC
CTCTTTTCTTTGTGGAGGAAGCGGCTCGAATACCTCTTCATCATTTTACC
CTGATTTCCCCTCTCTTCCTCCCTCCCTCCATCTCTTCTCCCCTCTTCAA
GACATGGGTAATATTGCGGCCTTGGTGTGGCGTGTCGTGTATGACCAGGA
CAAGAAGATGGTGGTGCCCTCAAGACCGGTCGTGACGTTTGGGTAAGGAG
GGAGGGAGGGTGGATGGAAGGGAGAGAGGGAGGTTCAAAGGGGGAAAGGA
ATACGGTTTTTGTATCGTGGCAGCGTCTGAGCAATTAAGAAGCCTTAAGT
GACACTCGATGAGTAATCCATCTACTCTATTTGGAAGAGAATAGGAGGGG
GGGCGAAAGTCGGAAAATAATTTCTGACTCCTTACCTCCCGTATTTCATT
CTCCCTCCCCTTCTCCTTTCCTGTCCGGTCACAACAATCATTATGAAAAG
TCGAGCTGTCACGTTTCAGAACAAGGTGCCGATGGAGCTGGGATTGCGAT
ACGGCTGGCGGTTCTGGGAAAACATGGGAGAGAGTGTAGAGTAGAGAGGA
GTGCAATATTGACGTGCCAAAAAAACAGGAGAAACGGTCGAATGGTTCTA
GCCAAGGGAAGAAAAGAATATTCAGAAACAAAGAAAGAAAGTTACTTTTG
TTTAGTGACTGTTCTGAGACGCTTTTGGTGTCGAATATGGCAG back to topCoding sequence (CDS) from alignment at chr4:1420599..1422991+ >NO04G05100.1 ID=NO04G05100.1|Name=NO04G05100.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr4:1420599..1422991+ (Nannochloropsis oceanica) ATGCGTGACTTTCTGCGCATCGCCATGGTGACCACCGCCATTGTCGCCCC TGTTCTTGCCTTCGTCCCGCCATCATCATTCTCCCGTGCTGCCCGTACCC GCGTGAACGTACACCCTCCGAAGAACGGGATTCCTGTCCGACCGGTCACA CTCGACCCCAAGCTAGTGCCAATCATCTACGACGGTCCCAAAGCAGAAGG AGGAGAGGTTAAGAGGGAAGTCGGCGCCATTTTGGAGGAGTACATGTTGG CGTTGGAGGTCGGTCCTTCTTCCGTTGTCCAAGGCGAGCGCGGGCTGTAC ATTCGGCTGATTGGGAAAGACGTGGAGGAGTCGACGGTGGAGTGGGGAAG CATTTTATGCGGATACGGAGAGGGCAGCATGCAGCCTCTGCCAGGAGCGG GGGATAAGAGCGTGCTCTTCTCTCTGCCGACTGCTGAGTCCGCTGTATTT TATAACAAAGAGTTAGTGCCCATATTCGAGGTGCTCGCGAGTCTGCCTGA CGGGACGGGTCTGCAAGGGCACGACGTCTCGATCGGGCATAAAGGCTTGA TGCAGGTCAAGCCCGTGCCCGACTTTACCGGAGACAAGTATTTCGTACCC AAAAATGGCCTTCCAAACAAGGCGGCGTTTATCGGACTTTTCGCCAACGA CCTGGCTATCGGCGGTCCCAATCCTCCCATAAGCAAAGACGAGTACGAAG ATGCTTCCGACATGGGTAATATTGCGGCCTTGGTGTGGCGTGTCGTGTAT GACCAGGACAAGAAGATGGTGGTGCCCTCAAGACCGGTCGTGACGTTTGG TCGAGCTGTCACGTTTCAGAACAAGGTGCCGATGGAGCTGGGATTGCGAT ACGGCTGGCGGTTCTGGGAAAACATGGGAGAGAGTGTAGAGTAG back to top
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