NO04G04340, NO04G04340 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G04340
Unique Name	NO04G04340
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	5096
Alignment location	chr4:1172520..1177615 -

Link to JBrowse

Properties


Property Name	Value
Description	PsbB mRNA maturation factor

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1172520..1177615 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom
IPR013026	TPR-contain_dom
IPR003107	HAT
IPR019734	TPR_repeat

Homology

[Close]

BLAST of NO04G04340 vs. NCBI_GenBank
Match: EWM28725.1 (PsbB mRNA maturation factor [Nannochloropsis gaditana])

HSP 1 Score: 466.1 bits (1198), Expect = 2.600e-127
Identity = 468/596 (78.52%), Postives = 509/596 (85.40%), Query Frame = 0

Query:  188 GLLYVLQGVHDRETIRSSSEEEADRAVAAVGLKGRSNAPLSSLDKAKACMPRLKKATGEGRKKGEKSMKEMADEVEARLAGDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLPYLPTHAEDLEAKMTAAEASSSSLDFLSKALSERMLEEKFDNVRAPYREPKRPKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWCGENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSASWLAKAQLLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHVYYIWHAWAVMEEKNGNFELARRYFRKALECQSRSIPTLIALAQLEEMDGNVGGCRELYERVLLIRPQAEVYWTQYEEMERRLGHVDHARRIDQRRNLAFGG 784
            GLLYVLQGV DRETIR SSE EA+RAVA VGLKG+SNAPLSSL++AKA MPRL++   E   +G        ++ E   AG                                           PPLPYLP+ AEDLEAK+  AE +S+SL+ LSKA++ERMLEEKFDNVRAPYREP+ PKPLPYQLDLL+YYAKEAL+KRN+PEA RIY+RC+ELDRYDGRAYIGLARIEGRRRN TAA+A+YEE L+WC +N FVLQAYGVF+Q+NG+LRKAMELFDAAI+ GP+HSA+WL KAQLLW XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VYYIWHAWAVMEEK+GNFELARRYFRKALE QSRS+PTL+ALAQLEEM+GNV GCRELYERVLLIRP+AE+YWTQYE MERR GHV+HA RI+QRR+LAFGG
Sbjct:  161 GLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAE-EVEGSVGETGWGNQDEDEGAG----------------------TVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLWEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYYIWHAWAVMEEKSGNFELARRYFRKALERQSRSVPTLVALAQLEEMEGNVEGCRELYERVLLIRPEAEIYWTQYEVMERRFGHVEHAMRIEQRRHLAFGG 733

[Close]

BLAST of NO04G04340 vs. NCBI_GenBank
Match: EWM28726.1 (PsbB mRNA maturation factor [Nannochloropsis gaditana])

HSP 1 Score: 355.5 bits (911), Expect = 5.000e-94
Identity = 189/300 (63.00%), Postives = 221/300 (73.67%), Query Frame = 0

Query:  188 GLLYVLQGVHDRETIRSSSEEEADRAVAAVGLKGRSNAPLSSLDKAKACMPRLKKATGEGRKKGEKSMKEMADEVEARLAGDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLPYLPTHAEDLEAKMTAAEASSSSLDFLSKALSERMLEEKFDNVRAPYREPKRPKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWCGENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSASWLAKAQLLW 488
            GLLYVLQGV DRETIR SSE EA+RAVA VGLKG+SNAPLSSL++AKA MPRL++   E   +G        ++ E   AG                                           PPLPYLP+ AEDLEAK+  AE +S+SL+ LSKA++ERMLEEKFDNVRAPYREP+ PKPLPYQLDLL+YYAKEAL+KRN+PEA RIY+RC+ELDRYDGRAYIGLARIEGRRRN TAA+A+YEE L+WC +N FVLQAYGVF+Q+NG+LRKAMELFDAAI+ GP+HSA+WL KAQLLW
Sbjct:  161 GLLYVLQGVRDRETIRGSSEAEAERAVAVVGLKGKSNAPLSSLERAKARMPRLEERVAE-EVEGSVGETGWGNQDEDEGAG----------------------TVRMGYREGDVAEEEGTEEAGPPLPYLPSQAEDLEAKIAEAETASNSLEILSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQRNGNLRKAMELFDAAIRHGPKHSAAWLGKAQLLW 437

[Close]

BLAST of NO04G04340 vs. NCBI_GenBank
Match: CBJ30324.1 (PsbB mRNA maturation factor Mbb1 [Ectocarpus siliculosus])

HSP 1 Score: 102.4 bits (254), Expect = 7.700e-18
Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 0

Query:  368 KPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWCGENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSASWLA 482
            +PL   LDLLSY AK+   K N  EA R+Y+ CVELD  DGR ++GLAR   +      A+ ++E GL+ C +N ++LQA+ V E++ G+  KA+ L + +++  P H+ASW+A
Sbjct:  338 RPLKINLDLLSYQAKQKNMKGNYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVA 451

[Close]

BLAST of NO04G04340 vs. NCBI_GenBank
Match: XP_009035259.1 (hypothetical protein AURANDRAFT_62582 [Aureococcus anophagefferens] >EGB10464.1 hypothetical protein AURANDRAFT_62582 [Aureococcus anophagefferens])

HSP 1 Score: 102.4 bits (254), Expect = 7.700e-18
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 0

Query:  365 KRPKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLAR-IEGRRRNTTAARAIYEEGLKWCGENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSASWLAKAQLL 487
            +RP+ LP   DLL++ AK AL++  + EA  +++RCV++DRYDGRAYI L+R +E R+R+   A A+  E LK    N++V QAY V  ++ G    A+     A+   P H ASW+A A+LL
Sbjct:  118 RRPRALPINADLLNWRAKRALRRGQLREARALWRRCVDVDRYDGRAYIALSRDLEFRKRDAAGAGALLSEALKLDPSNAYVRQAYAVLLERRGRRDDALAELKLAVDYDPGHGASWVAMARLL 240

[Close]

BLAST of NO04G04340 vs. NCBI_GenBank
Match: XP_005718161.1 (TPR repeat-containing protein [Chondrus crispus] >CDF38276.1 TPR repeat-containing protein [Chondrus crispus])

HSP 1 Score: 96.3 bits (238), Expect = 5.500e-16
Identity = 51/141 (36.17%), Postives = 86/141 (60.99%), Query Frame = 0

Query:  342 SKALSERMLEEKFDNVRAPYREPKRPKPLPYQLDLLSYYAKEALKKRNI-PEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWCGENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSASWLA 482
            S+ALS ++        +     P    PLP QLDLL+Y+A+ A ++RN    A R+Y+RCV+++  DGRA++GLA++     +   AR  +  G+    +NS +LQA+GV E++ G + +A   ++AA++  P+H+ SW+A
Sbjct:  124 SEALSRKVQSSILAAEQGCDMYPLHLTPLPVQLDLLNYHARVASRRRNTRARARRLYRRCVDINSADGRAWLGLAKLHLAEGDVANARKTFRGGVNSSRKNSHLLQAWGVLEEREGFVDRAKGFYEAAVRANPQHTPSWVA 264

[Close]

BLAST of NO04G04340 vs. NCBI_GenBank
Match: GAX15126.1 (hypothetical protein FisN_12Lh178 [Fistulifera solaris])

HSP 1 Score: 92.0 bits (227), Expect = 1.000e-14
Identity = 54/136 (39.71%), Postives = 76/136 (55.88%), Query Frame = 0

Query:  361 YREPKR-PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWC----------GENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSASWLAKAQL 486
            YRE  R    LP   D L+Y AK+ +KK  + EA  +Y+R VE+D  DGRAY+GL+R   RR++   AR     G+             G N F+LQA G  E+K G L +A  L+ +A++  P H+A W+A AQ+
Sbjct:  251 YREGVRLGNALPINADRLNYMAKKEMKKGRVEEAEELYERAVEIDPRDGRAYLGLSRCAQRRQDFKLAREWLNLGIANSASTFNGNPDRGANPFLLQALGCLEEKAGQLSQAESLYTSAVRSRPSHAAGWVALAQI 386

[Close]

BLAST of NO04G04340 vs. NCBI_GenBank
Match: XP_002290609.1 (THAPSDRAFT_262464 [Thalassiosira pseudonana CCMP1335] >EED92361.1 Hypothetical protein THAPSDRAFT_262464, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 91.7 bits (226), Expect = 1.400e-14
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 0

Query:  342 SKALSERMLEEKFDNVRA-PYREPKR-PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGL-KWCGENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSASWLAKAQL 486
            S A S +      D+ RA  +RE +R  K L   +D L Y+AK+ L+   + EA   Y + +E+D  DGR Y+GL+RI  RR +   A+ +  +G+ +  G N F+LQA G  EQ++G L  A EL+  A++  P H+A+W+A AQL
Sbjct:   12 SPAGSIQYTASMLDSSRAVQFREGRRLGKALSINIDRLCYFAKKDLRHGKLEEAQEYYMKALEMDPSDGRPYLGLSRIAERRGDLEYAKGMLRQGIARNNGPNPFLLQALGTLEQRSGHLAHAEELYLQALRSRPSHAAAWVALAQL 158

[Close]

BLAST of NO04G04340 vs. NCBI_GenBank
Match: GAX23607.1 (hypothetical protein FisN_12Hh178 [Fistulifera solaris])

HSP 1 Score: 91.7 bits (226), Expect = 1.400e-14
Identity = 54/136 (39.71%), Postives = 76/136 (55.88%), Query Frame = 0

Query:  361 YREPKR-PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWC----------GENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSASWLAKAQL 486
            YRE  R    LP   D L+Y AK+ +KK  + EA  +Y+R VE+D  DGRAY+GL+R   RR++   AR     G+             G N F+LQA G  E+K G L +A  L+ +A++  P H+A W+A AQ+
Sbjct:  251 YREGVRLGNALPINADRLNYMAKKEMKKGRVEEAEELYERAVEIDPRDGRAYLGLSRCAQRRQDFKLAREWLNLGIANSASTFNGNPDRGANPFLLQALGCLEEKAGQLSQAESLYASAVRSRPSHAAGWVALAQI 386

[Close]

BLAST of NO04G04340 vs. NCBI_GenBank
Match: OEU15372.1 (TPR-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 88.6 bits (218), Expect = 1.100e-13
Identity = 47/128 (36.72%), Postives = 72/128 (56.25%), Query Frame = 0

Query:  369 PLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKW-----------CGENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRHSASWLAKAQL 486
            PL    D L+Y+AK+ L+   + EA  +Y++ +++D  DGRAYIGL+R   RRR+   A+     G+              G N F+LQ  G  E+K G L +A  L+ +A++  P H+ASW+A AQ+
Sbjct:   37 PLRVNADRLNYHAKKELRSNRLEEAQELYEQAIQIDPRDGRAYIGLSRCAQRRRDFKLAKEYLRIGIAQSVSCGYDSKPDVGANPFLLQTLGCLEEKMGHLSEAESLYISAVRSRPSHAASWVALAQI 164

[Close]

BLAST of NO04G04340 vs. NCBI_GenBank
Match: XP_002316041.3 (protein high chlorophyll fluorescent 107 [Populus trichocarpa] >PNT16518.1 hypothetical protein POPTR_010G145000v3 [Populus trichocarpa])

HSP 1 Score: 85.5 bits (210), Expect = 9.700e-13
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 0

Query:  358 RAPYREPKR---------PKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRCVELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWC-GENSFVLQAYGVFEQKNGDLRKAMELFDAAIKQGPRH 476
            + P  EP+R          KPL   LDL  Y AK   ++    EA  I ++C+     DG+ Y+ L RI G++  T AARA+YE+G +   GEN +V Q + V E K G++R+A ELFDAA     RH
Sbjct:  133 KMPIFEPERVGSSGSGPQEKPLVVNLDLALYKAKVLARRFKYKEAEEILQKCISYWPEDGKPYVALGRILGKQSKTEAARAVYEKGCQATQGENPYVWQCWAVLENKMGNIRRARELFDAATVADKRH 260

The following BLAST results are available for this feature:

BLAST of NO04G04340 vs. NCBI_GenBank

BLAST of NO04G04340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28725.1	2.600e-127	78.52	PsbB mRNA maturation factor [Nannochloropsis gadit...	[more]
EWM28726.1	5.000e-94	63.00	PsbB mRNA maturation factor [Nannochloropsis gadit...	[more]
CBJ30324.1	7.700e-18	42.98	PsbB mRNA maturation factor Mbb1 [Ectocarpus silic...	[more]
XP_009035259.1	7.700e-18	43.09	hypothetical protein AURANDRAFT_62582 [Aureococcus...	[more]
XP_005718161.1	5.500e-16	36.17	TPR repeat-containing protein [Chondrus crispus] >...	[more]
GAX15126.1	1.000e-14	39.71	hypothetical protein FisN_12Lh178 [Fistulifera sol...	[more]
XP_002290609.1	1.400e-14	38.78	THAPSDRAFT_262464 [Thalassiosira pseudonana CCMP13...	[more]
GAX23607.1	1.400e-14	39.71	hypothetical protein FisN_12Hh178 [Fistulifera sol...	[more]
OEU15372.1	1.100e-13	36.72	TPR-like protein [Fragilariopsis cylindrus CCMP110...	[more]
XP_002316041.3	9.700e-13	39.84	protein high chlorophyll fluorescent 107 [Populus ...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL082	nonsL082	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL080	nonsL080	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR058	ncniR058	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR110	ngnoR110	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009355	NSK009355	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G04340.1	NO04G04340.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668891	gene_2221	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Mbb1	gene1781	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G04340.1	NO04G04340.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G04340 ID=NO04G04340|Name=NO04G04340|organism=Nannochloropsis oceanica|type=gene|length=5096bp
GAACGGCTCGTGCCATGGCGCTGTGTATTGCATGTTTGGTGTAGGTTTGG
GAAAGAGAGGGGGAAGATGGATGAGCGAGAGGTGCAACAAGGCACGGAAG
ATAGCAATGGAGTGGGGGTGTGTGGCTGAGAGCCAATCTGATCTATTGTC
ATGAGGCCATCGTACATCCCTCCCCGCCACACTATGCAATACGGGCACTA
CAAGGTCTTGACGTGGAAGTTGCTATAATGTGCGAGGAGGGCTTTATCTT
CTAGTTGCCGTGCCCTAGGCGTGGGCGTGGTTGGCGTGTGGGCAAGAGCC
TCAGCCGCTATTGGACTTTGTGCGAAATCACATGATACTCACCGAGCGTG
CCCTCGGCCTCTCTCTAATGCGCCATGCGCTACATAAACCTCGCCACCTC
ACGAACCTTCATACAGTATAGGCATCACCTTCTCGAGTGTCTACGCTGTG
CGACATTCAAGCTTTTTGGGGTCTTTGATTTTCACTTATCCGAACGATAT
CGATCCGGAGAGCCTCCCCGCTACGACTCAGTCGATTTGCTGCCTTCTCC
CTTAATTGACTTGCACCTGTCCCTGGCCTCTGCCGACTGGCTTTCCTTTC
ATTCTCTCACTTCCGAGCCACATTTCACACAGGCAGGGAGATGGCAGTGT
CAAGGAGAAGACGGAGACCAGGTTCCCCTCTCTCTGTCACGAAGGCCGCT
GTCGTCGTCCTCCTAAACGCGACCTTATCAGCAACAGCATCATCATCATC
ACCACATTCTTCCTCTTTCCAACCACCACTGgtacgtcttatgtgtccaa
tcccatctcctctctctcttcgtgggtatcggaaggatggaatgggacag
tggtgtccctatccccgcaagtaattttctaatcacccttttttcctttc
cgatccgcacacagCACGGCGGGGCTTTCATCCCCCCAGGCGCTGGCGCT
GCCTATTCCCGATGGTGGCAAAGGACGATCACCACCACCAGTAGCAGTAG
CGGCAGCAGCTGTGGCGTCAGTAGCAGCAGCAGCAGCGATAGAATAACAA
AGGGAAGACGGGACGAGGACAGCATTTTAGGAAGCGCAGCATCACACTGT
AATATAATTCCTTCCTTGTTCCCTTCCTGCTCCTCCACCTCGACCCTCCT
ACTCGCCACAGCCAAGACACGCACGGACCCTTCAGCGGCACAGTTTTCTG
CCCCCTCCTCATCCTCGTCTGCTCCCCCTCCCCTCATTTCTACCACCATC
ACGGCCAGCAGCAGCACCACTGCGTCAAAACCCAGCACCAAAAGCAGGAG
CAGCAGCAGCGGCGGCGGTAGCAGCAGCAAACCTGGCTTGCTCTACGTGT
TGCAAGGTGTTCATGATAGGGAGACAATACGGAGCAGCAGCGAGGAGGAA
GCTGATCGTGCAGTGGCAGCAGTGGGACTTAAGGGGAGAAGCAATGCCCC
TCTTTCGTCTTTGGATAAGGCCAAGGCATGCATGCCGAGGTTGAAGAAAG
CGACGGGGGAGGGAAGAAAGAAGGGAGAGAAGAGCATGAAAGAGATGGCA
GATGAAGTCGAAGCACGACTCGCCGGAGACTACGAGGAGGAGGAGGAGGA
GGAGGATGAGGATGCCTTTTCCACCAGAAGAGCTGCCGCCGCAGCAGCTT
CCACGGAGGAGGAGGAGGACGAGGACGAGGAGGAAGGTTCCAAAGAGGAA
CCCGGGCCTCCGTTGCCTTACCTCCCGACGCACGCCGAAGACCTGGAAGC
GAAGATGACGGCAGCGGAGGCGTCTTCCTCCTCCCTGGATTTCCTGTCCA
AAGCCTTGTCGGAGCGCATGCTGGAGGAAAAATTTGACAATGTCCGCGCT
CCCTACCGAGAGCCGAAACGGCCGAAACCGCTCCCTTATCAGTTAGATTT
ACTCTCGTACTATGCGAAGGAAGCGTTGAAGAAGAGGAACATCCCAGAGG
CCGTGAGGATCTATAAGAGATGCGTGGAGCTGGACCGGTACGACGGGAGG
GCTTACATCGGCCTGGCGCGGATAGAGGGGCGGCGGAGAAACACCACGGC
GGCGAGGGCGATATACGAAGAGGGCCTCAAGTGGTGTGGGGAGAACTCGT
TTGTGTTGCAGGCGTATGGCGTGTTTGAGCAGAAGAACGGGgtacgtgcc
aagcttccctccctccctccctccctccctccctccgtcccgccgtccct
ccctccctccgttcctccctccctttcccccgaaacacaggaaacacaga
actcatcccgtcctctctccttttctccctccctcctccctcttttcctc
ccccctcctttcttccttgcccatcaacacagGATCTACGCAAGGCGATG
GAGCTCTTCGATGCTGCCATCAAGCAGGGCCCTCGGCATTCGGCGTCCTG
GCTGGCCAAAGCCCAATTACTGTGGGAATTGGGTCGGAAACGAGAGGCCC
GCGAATGCTTCCAAACCGCCGTGCAGAGCAACACGGACAACGAGGTGCTA
TGGCACGCGTGGGGAGTGGCCGAGAAGCGGGATGGAAATTTCGGCGTGGC
CCGGAAACTGCTTCGGAAGGCGACTGAGATCAACCCCAGgcaagcgaagg
cccatcggttcgaaacgaattcacgtcgttctcgacctagattttctctc
ccctctcccttgtgtcgctctctgtcctctgatcgatctccccgcgcctc
acttcccccccctccctccttccttgtagAAACTCGTTCTGCTGGCATGC
TTGGGCCGTGATGGAACAAGAGCTTCGCAATCAGGACCTGGCCGTCGACC
TCTATCAAAACGCCTTGAAAgtgagaaagagagggagggagggagcgagg
gagggagggagcgggcaggtccaaattgggagtagtgttatcgtgagacg
tacggtcacactcaactcttctcctaccctcctccctccttccctccctt
cctctttcagGCCTTTCCCAACAGCAGCCACACCTATCAAGCGTGGGCCT
GTCTCGAGAAAGAGCGAGGGAACTGGGATTTAGCGTTTTCTCTCTTCCGC
TCGGGCATCGAGAAACGGCCGTGGGATGGCGGGGCGTACCAGCCGTATGC
CCTGGCGCTGAAGGAGAGGGGGGAGATGGCTAGTGCGATGGAGGTGTTTC
AGAAGGGTCTGCTGGAGGATCCGTACCACTGCCCGCTTTACCAGgtgcgt
gcttatatcctcattttcttaatttggttcgtgaagcatttataaacaat
aattataatttttattcttgttgtttttttgttttttgggggctttttct
aattccgttcccatcccttgcgcgattcattttctcctttcctcatcacg
ctgcctaacacatcatccctcccctcccccccttccttcctcccttcctc
cctctccaacagGCCTTCGGCATGCTTCTCGCGGAGTTGGGGAGGGTAGA
TGCGGCAAGAGTCATCTTCGAGCGCGGCACCACCACCAACCCCCGGGGTC
GACATGTTTACTACATCTGGCATGCCTGGGCTGTTATGGAAGAGAAGAAC
Ggtaagccctccctccctcccttcctccctccctccctccctttcttcct
ccctccctccctccctccctccctccctcgcttcccccctcattttccgc
cgttacgcacattttgtcccatttcacttcatctcctcccacgcgtgtgt
cataaatacacaaggttacttcttcgacctcccttctttcccttttttca
tatttttctccctttctccttttccctttggaaatcaaacacacgctgcg
aggagaaacgaaacatccaacaactccctcctcccttctcccccccccct
tcctccctccctccctccctccctgccccagGTAATTTCGAGCTCGCCCG
CCGCTACTTTCGCAAGGCCCTCGAGTGCCAATCCCGCTCCATCCCTACCC
TGATCGCCCTGGCGCAGCTGGAGGAGATGGACGGGAACGTGGGTGGATGT
CGTGAGCTTTATGAGCGGGTCTTGCTGATTAGGCCTCAGGCGGAGGTGTA
TTGGACGCAGTATGAAGAGATGGAGAGGAGGTTAGGACATGTGGATCATG
CACGCAGGATCGATCAAAGAAGGAATCTGGCTTTTGGGGGGTTTGGGGGA
GGACTAGGAGGAAGGGGAGGGGGAGGAAGGGGGGAGGGAGGGGAAGAGGA
GGGGGgtgaggggggggctacgggagagggagtcggatgaaggggctctt
tgactctttccaagGATCGTATGCTCTGCCGAGGAGAACGATGGAGGAGG
AGGAGGGTAGGGGAGGGGGCAGGGAAGGAGGAGAGGTGGAAAGAGGGGGG
AGAGAGGGGGGCAGCAGTAGTACCAGTATGAGTAGTAGTAGTAGTAGCAG
CAGCAGTAGCTGGAGAAGTGGTGGAGAGGGGGAAAGAGGGGGTGGTGGAG
GAGGTGGGGAGTCATCACAGCAACAGAAGCAACAGCAACAATTGCAGCAA
CAGCAACAGCAGCAAAGGGGGAGAATAGGAGGGAATCCAGGAGGATCTTC
TCCGTCGCTGCCGTTGAGGCAGCAGCAGAAGGACGACTTGTCTGCGTTTG
ATACCTTCTTGGAGGGGGGAGGAGCGGGGGGAGGGATGGGGTTAGGAAGG
GGGGAAGGACCGCAGAGGCGGAATGTGACACTGGGAATTGCATAAAGAGC
ATTGAGGAGGAAGACAAGGAGAAGAAGAGAAAGACAGGCGTTGTGCAGAT
AAATTTAAGCGATTGGCGAGACATTCCTGAGATAGATTGAGCGTGCCGGT
GCACGAGCAATTATGGGAGAGGATGGTTGCCGGGAAGAAAAGACGGTAAA
ACACATTTAGAAGAAGAGGAGGTCGAAGAGATGAAGGAAGAACAAGCAGA
GAAGTGGAGAAGCAGAGGAGAGGTTAGGGTTAGGGAGGGAGAAGGAGACG
ATGCAGTTGAAGAAGTGAGGAAGGAGAGGAAGAAGAGGCAGAATGAAAGA
AAGAAATAGGAAAGAAGACAGAGGAGGAACGAAAAGAATTCACTGGTAAA
AATGGGGGAGGAAACAGTGAAGAGGAATACAAGGCCATGTGAAATG

protein sequence of NO04G04340.1

>NO04G04340.1-protein ID=NO04G04340.1-protein|Name=NO04G04340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=948bp
MAVSRRRRRPGSPLSVTKAAVVVLLNATLSATASSSSPHSSSFQPPLHGG
AFIPPGAGAAYSRWWQRTITTTSSSSGSSCGVSSSSSSDRITKGRRDEDS
ILGSAASHCNIIPSLFPSCSSTSTLLLATAKTRTDPSAAQFSAPSSSSSA
PPPLISTTITASSSTTASKPSTKSRSSSSGGGSSSKPGLLYVLQGVHDRE
TIRSSSEEEADRAVAAVGLKGRSNAPLSSLDKAKACMPRLKKATGEGRKK
GEKSMKEMADEVEARLAGDYEEEEEEEDEDAFSTRRAAAAAASTEEEEDE
DEEEGSKEEPGPPLPYLPTHAEDLEAKMTAAEASSSSLDFLSKALSERML
EEKFDNVRAPYREPKRPKPLPYQLDLLSYYAKEALKKRNIPEAVRIYKRC
VELDRYDGRAYIGLARIEGRRRNTTAARAIYEEGLKWCGENSFVLQAYGV
FEQKNGDLRKAMELFDAAIKQGPRHSASWLAKAQLLWELGRKREARECFQ
TAVQSNTDNEVLWHAWGVAEKRDGNFGVARKLLRKATEINPRNSFCWHAW
AVMEQELRNQDLAVDLYQNALKAFPNSSHTYQAWACLEKERGNWDLAFSL
FRSGIEKRPWDGGAYQPYALALKERGEMASAMEVFQKGLLEDPYHCPLYQ
AFGMLLAELGRVDAARVIFERGTTTNPRGRHVYYIWHAWAVMEEKNGNFE
LARRYFRKALECQSRSIPTLIALAQLEEMDGNVGGCRELYERVLLIRPQA
EVYWTQYEEMERRLGHVDHARRIDQRRNLAFGGFGGGLGGRGGGGRGEGG
EEEGGSYALPRRTMEEEEGRGGGREGGEVERGGREGGSSSTSMSSSSSSS
SSSWRSGGEGERGGGGGGGESSQQQKQQQQLQQQQQQQRGRIGGNPGGSS
PSLPLRQQQKDDLSAFDTFLEGGGAGGGMGLGRGEGPQRRNVTLGIA*

Synonyms

Publications