NO03G00460, NO03G00460 (gene) Nannochloropsis oceanica

Overview
NameNO03G00460
Unique NameNO03G00460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3102
Alignment locationchr3:145057..148158 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:145057..148158 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G00460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00460.1NO03G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G00460.2NO03G00460.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571378gene_1221Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00460.1NO03G00460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G00460.2NO03G00460.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00460 ID=NO03G00460|Name=NO03G00460|organism=Nannochloropsis oceanica|type=gene|length=3102bp
ATCGGAATATGGGGGTTTGGTGATGCCTTCCACGGTACACTGTCGGCCTG
CTTAGGCACGCGCCATTGATTGAAAACCCCTCCACGAGTTGCTGAAGTCT
TTTTGGTATGTCTTCCTTTAGAAGGCCGCCAACAAGGACTTACTGCGCCC
TTGATTTCTCTTTTCTTTTATGTGGCCAGGCGTGCATCTACATCTCCCCT
CTCATCCTTCACAGCACTCCTTGTTCCACAGACTTCACCATTACCCAATT
CGCCTTGTGCATGGACGCTACTCGGTCCCTCGAGGATGCGCAACGCACCA
TGCGCTTGAATGAAAAGGTACGTGCGCGTGCGCAGTTTATATATCGGATC
CTTTCTCTCCTCCCGTTCACACCAACTTCGGACGGCTTGCAGACGACCGC
GTTGCTACTCACAGGTCGTCGACCCGACGCTCCACCGTACCTGGGGCCAG
GAGCATCAGAGAGCAGCAGCGAAGCGACCTACCTGTCGTTGCTTTGTGAC
CTGGAAGAGGCCAAGAAGAAGGGTAGAAAGGGTTGCGGCACTGACATGAC
GACGACGCACACGGTGCCGCCCAGCCATATCGCAGGGCTACTGCGGCAGG
AGATTGCCAGGCAGAAAAATCTGgtacgtttcatcatcctcaagtcctta
tccacatctacattcctttttcctgacttctcctctctcccttccctcct
acctctcttcctcctcccatttttagATCGCTCAGGACGCTGCCCGTTTC
CAGTCTTTTCAGGCGTCCCTGTTCTACACCCAACAAATCTATGAGCATGG
CCTTAAAAAGGTAGAGAAATGCGCGACATCGAAGGTATACAATAAGGAGA
TGAATGGCATGTTGAAAGACACCATCCGACGGACACTGGAAGGGTTGCGA
GCTGGAGGAGAGGGAGGAGAGATAGGAGGAGGAGGAGGAGGAGAAGGAGG
AGAAGGAGGAGGAGAAGGAGAAGAAGGGGGGGAGTGAACGAGGAGGGGGG
GAAGATTCTTGATGTGAGTAGTAAAAAGACAGCCATGTATCTAAATGATT
CAAATATTAAGAAAGAAATTAAAGGAGGAAAGCATGAACCTAGAACAACG
CCCTCTCCTCTTGTTTATCCATCTGTATTTTTCTTTTTTCAGTTTTCTTC
ACCACAATGGATCTCTCTCACTTACTACTGCTGCTACTACTGCTGTGGCT
GCTGCTGTTGCTGCTGTTTTCTTTTTTCTCTTCCTTATCTTTCATGCCTC
TTCCTCCTCCTCCTCAACGTATTACATGCTTCATTTTTAAATTTTTCGTG
TACATGTAAGTGTGCATCTTTCTCTCTTCCTCCTTCTTTCCTCCTTTCAC
TCGCTCATGCACATACATACGGACGGACGCGCAAACACAAACCCTCCCTC
TCTTTCCATTTTGTCCTACTTGCCTTCTTCCTGCTCCCTCACTCGCGATG
TGCGGATAAATCCCCCGCCATGCTGCTCATCCTCCTCCTCTTCCTTCTCC
TCCTCCTTCTTTTCCTCACCTCCCCCGACGTCCTTCCCTGGGACTCTCCG
CTATACACTCGCACCTAATTACGACGCTCAAAATACGTCCCTATCCGTCC
AAAGCCCACCTGCACCTCGTCCGCTATACACACAAGAGGAGAGACGGGAG
GGGCAGGGGTACTCCTATCTCCCTTCCTTCTCCCATTGCTTCTCTTCTCG
TTCCTTGCCCGCCTTACAACTTCATGGGCTTAGGCATCTTCAAAGGGGAA
AGCCCTTGTTTGAAGGGAGAGGTGCGTGAAGGAGAGATGCCCTTGGGCTG
CTGGGAGGAGGGAGGGGAGGAGGACGAAGGGGAGGGGTTGACACGGCTTG
CGGCTTGAGGCATGGGGGTTGGAGAGGCTGGCTCTTGTTGTGGTTGTTGC
GGCTAAAGGAAGGAGGGAAGGAGGGAGGGCGGGAGGGAGGGCGGAAGAAA
GGAAGTTAGAACCGAGCGGGGCGGGTCGTAGTACACCTAGTTATGGCAAT
CTTGTGGTACCCTCCCTCTGTCCCTTCAGACAGTGCAGTGCGTTATGAGG
CAAGAGAGGAGACATAAGCATCTATACGCCTCATGCTGTCCTTATCTCTC
TCTGTCGTGGTTTAAAGACAGTCCAAATTTTCATTTGTTCCTCTCGTTCC
TCCATCTATCGCAGATGTCAAAGACGTCAAGAGACCCAGCCTCGGTCGAG
ACCGCATAACCCTATTTGGACCGCTCTAATTCGAGTTCGGCACCCGTGAC
ATGTAAAGGTGAGCGCTCATGAAGCGCATGCACAATGCCTCTTCGGTGGG
AACACAGCGCACATGCAGCGGGGTATCTGTGGATCCTCCCTATCCCTCCC
TCCCTGACCCTCCCATCCTCGCACACACGTACCTGATGGTCCGGCTGCAT
CTTTCTAATTTCCTCTTTCTGGTTGTGCTGTGGTGACGGGGGGGATAGGC
AGGGCGTTAGGGATGAGGGAGGCCTGGATCTGGAATGCATCTCCGGAAGT
CGTCATCATTCAAGTGCACGCGTGCGTGGACGGTTGGACAAACAGTCCAT
GGGGCAGGAAGTCGCCAGGGGGCATTTCGAAATTAAACAATGCATTAAGT
GAGATACAGAGAGACATCTGCGAGATGAGGCAGGGGTCATCCCAATGCAA
AAAAATGATCGGCATCACAACCGACGAGCTTTCACTGGAAAGGGGAGGGA
GGCAGGCTCGCACTATAATCGAGCGATTTTACACATAGAGGTCAAGGGAC
ATGTCACTCAATCTACAGGGTCACACATCACACAAGTAGACAGACACTCA
CTCAACGTAAATCTTTCTGAAGGGTTGTCTGCGAGGATTAAGGAAAATGT
CATTCATTCATTTTACCTTTCGAGTGGCAAAGTGCCCACCGACAAAGACC
TCCCCTTGAGCCTTCCATGGGCCCTCCCTGCGAGCTTGGTGGGGGTGTCA
CGTTGAGTATCGAATAGCCCTCCCAAGTGGTGTGTATGTGTGTGTGTGTG
TTCCTGTCACTGTGGTGCCGTCTCTTTTCCTCTCTCTCTCTTAATTCTGG
TGAGCGCAACTAAAGTAAAAAGCTTCCAAGAGAGAAATCTTGACACCACG
AT
back to top

protein sequence of NO03G00460.1

>NO03G00460.1-protein ID=NO03G00460.1-protein|Name=NO03G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MSSFRRPPTRTYCALDFSFLLCGQACIYISPLILHSTPCSTDFTITQFAL
CMDATRSLEDAQRTMRLNEKVRARAQFIYRILSLLPFTPTSDGLQTTALL
LTGRRPDAPPYLGPGASESSSEATYLSLLCDLEEAKKKGRKGCGTDMTTT
HTVPPSHIAGLLRQEIARQKNLIAQDAARFQSFQASLFYTQQIYEHGLKK
VEKCATSKVYNKEMNGMLKDTIRRTLEGLRAGGEGGEIGGGGGGEGGEGG
GEGEEGGE*
back to top

protein sequence of NO03G00460.2

>NO03G00460.2-protein ID=NO03G00460.2-protein|Name=NO03G00460.2|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MDATRSLEDAQRTMRLNEKTTALLLTGRRPDAPPYLGPGASESSSEATYL
SLLCDLEEAKKKGRKGCGTDMTTTHTVPPSHIAGLLRQEIARQKNLIAQD
AARFQSFQASLFYTQQIYEHGLKKVEKCATSKVYNKEMNGMLKDTIRRTL
EGLRAGGEGGEIGGGGGGEGGEGGGEGEEGGE*
back to top
Synonyms
Publications