NO03G00460.2, NO03G00460.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00460.2
Unique NameNO03G00460.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2706
Alignment locationchr3:145275..148158 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:145275..148158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G00460.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00460NO03G00460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00460.2NO03G00460.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00460.2.cds1NO03G00460.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00460.2.cds2NO03G00460.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00460.2.cds3NO03G00460.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00460.2 ID=NO03G00460.2|Name=NO03G00460.2|organism=Nannochloropsis oceanica|type=mRNA|length=2706bp
CCTTGTTCCACAGACTTCACCATTACCCAATTCGCCTTGTGCATGGACGC
TACTCGGTCCCTCGAGGATGCGCAACGCACCATGCGCTTGAATGAAAAGA
CGACCGCGTTGCTACTCACAGGTCGTCGACCCGACGCTCCACCGTACCTG
GGGCCAGGAGCATCAGAGAGCAGCAGCGAAGCGACCTACCTGTCGTTGCT
TTGTGACCTGGAAGAGGCCAAGAAGAAGGGTAGAAAGGGTTGCGGCACTG
ACATGACGACGACGCACACGGTGCCGCCCAGCCATATCGCAGGGCTACTG
CGGCAGGAGATTGCCAGGCAGAAAAATCTGATCGCTCAGGACGCTGCCCG
TTTCCAGTCTTTTCAGGCGTCCCTGTTCTACACCCAACAAATCTATGAGC
ATGGCCTTAAAAAGGTAGAGAAATGCGCGACATCGAAGGTATACAATAAG
GAGATGAATGGCATGTTGAAAGACACCATCCGACGGACACTGGAAGGGTT
GCGAGCTGGAGGAGAGGGAGGAGAGATAGGAGGAGGAGGAGGAGGAGAAG
GAGGAGAAGGAGGAGGAGAAGGAGAAGAAGGGGGGGAGTGAACGAGGAGG
GGGGGAAGATTCTTGATGTGAGTAGTAAAAAGACAGCCATGTATCTAAAT
GATTCAAATATTAAGAAAGAAATTAAAGGAGGAAAGCATGAACCTAGAAC
AACGCCCTCTCCTCTTGTTTATCCATCTGTATTTTTCTTTTTTCAGTTTT
CTTCACCACAATGGATCTCTCTCACTTACTACTGCTGCTACTACTGCTGT
GGCTGCTGCTGTTGCTGCTGTTTTCTTTTTTCTCTTCCTTATCTTTCATG
CCTCTTCCTCCTCCTCCTCAACGTATTACATGCTTCATTTTTAAATTTTT
CGTGTACATGTAAGTGTGCATCTTTCTCTCTTCCTCCTTCTTTCCTCCTT
TCACTCGCTCATGCACATACATACGGACGGACGCGCAAACACAAACCCTC
CCTCTCTTTCCATTTTGTCCTACTTGCCTTCTTCCTGCTCCCTCACTCGC
GATGTGCGGATAAATCCCCCGCCATGCTGCTCATCCTCCTCCTCTTCCTT
CTCCTCCTCCTTCTTTTCCTCACCTCCCCCGACGTCCTTCCCTGGGACTC
TCCGCTATACACTCGCACCTAATTACGACGCTCAAAATACGTCCCTATCC
GTCCAAAGCCCACCTGCACCTCGTCCGCTATACACACAAGAGGAGAGACG
GGAGGGGCAGGGGTACTCCTATCTCCCTTCCTTCTCCCATTGCTTCTCTT
CTCGTTCCTTGCCCGCCTTACAACTTCATGGGCTTAGGCATCTTCAAAGG
GGAAAGCCCTTGTTTGAAGGGAGAGGTGCGTGAAGGAGAGATGCCCTTGG
GCTGCTGGGAGGAGGGAGGGGAGGAGGACGAAGGGGAGGGGTTGACACGG
CTTGCGGCTTGAGGCATGGGGGTTGGAGAGGCTGGCTCTTGTTGTGGTTG
TTGCGGCTAAAGGAAGGAGGGAAGGAGGGAGGGCGGGAGGGAGGGCGGAA
GAAAGGAAGTTAGAACCGAGCGGGGCGGGTCGTAGTACACCTAGTTATGG
CAATCTTGTGGTACCCTCCCTCTGTCCCTTCAGACAGTGCAGTGCGTTAT
GAGGCAAGAGAGGAGACATAAGCATCTATACGCCTCATGCTGTCCTTATC
TCTCTCTGTCGTGGTTTAAAGACAGTCCAAATTTTCATTTGTTCCTCTCG
TTCCTCCATCTATCGCAGATGTCAAAGACGTCAAGAGACCCAGCCTCGGT
CGAGACCGCATAACCCTATTTGGACCGCTCTAATTCGAGTTCGGCACCCG
TGACATGTAAAGGTGAGCGCTCATGAAGCGCATGCACAATGCCTCTTCGG
TGGGAACACAGCGCACATGCAGCGGGGTATCTGTGGATCCTCCCTATCCC
TCCCTCCCTGACCCTCCCATCCTCGCACACACGTACCTGATGGTCCGGCT
GCATCTTTCTAATTTCCTCTTTCTGGTTGTGCTGTGGTGACGGGGGGGAT
AGGCAGGGCGTTAGGGATGAGGGAGGCCTGGATCTGGAATGCATCTCCGG
AAGTCGTCATCATTCAAGTGCACGCGTGCGTGGACGGTTGGACAAACAGT
CCATGGGGCAGGAAGTCGCCAGGGGGCATTTCGAAATTAAACAATGCATT
AAGTGAGATACAGAGAGACATCTGCGAGATGAGGCAGGGGTCATCCCAAT
GCAAAAAAATGATCGGCATCACAACCGACGAGCTTTCACTGGAAAGGGGA
GGGAGGCAGGCTCGCACTATAATCGAGCGATTTTACACATAGAGGTCAAG
GGACATGTCACTCAATCTACAGGGTCACACATCACACAAGTAGACAGACA
CTCACTCAACGTAAATCTTTCTGAAGGGTTGTCTGCGAGGATTAAGGAAA
ATGTCATTCATTCATTTTACCTTTCGAGTGGCAAAGTGCCCACCGACAAA
GACCTCCCCTTGAGCCTTCCATGGGCCCTCCCTGCGAGCTTGGTGGGGGT
GTCACGTTGAGTATCGAATAGCCCTCCCAAGTGGTGTGTATGTGTGTGTG
TGTGTTCCTGTCACTGTGGTGCCGTCTCTTTTCCTCTCTCTCTCTTAATT
CTGGTGAGCGCAACTAAAGTAAAAAGCTTCCAAGAGAGAAATCTTGACAC
CACGAT
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protein sequence of NO03G00460.2

>NO03G00460.2-protein ID=NO03G00460.2-protein|Name=NO03G00460.2|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MDATRSLEDAQRTMRLNEKTTALLLTGRRPDAPPYLGPGASESSSEATYL
SLLCDLEEAKKKGRKGCGTDMTTTHTVPPSHIAGLLRQEIARQKNLIAQD
AARFQSFQASLFYTQQIYEHGLKKVEKCATSKVYNKEMNGMLKDTIRRTL
EGLRAGGEGGEIGGGGGGEGGEGGGEGEEGGE*
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mRNA from alignment at chr3:145275..148158+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00460.2 ID=NO03G00460.2|Name=NO03G00460.2|organism=Nannochloropsis oceanica|type=mRNA|length=2884bp|location=Sequence derived from alignment at chr3:145275..148158+ (Nannochloropsis oceanica)
CCTTGTTCCACAGACTTCACCATTACCCAATTCGCCTTGTGCATGGACGC
TACTCGGTCCCTCGAGGATGCGCAACGCACCATGCGCTTGAATGAAAAGG
TACGTGCGCGTGCGCAGTTTATATATCGGATCCTTTCTCTCCTCCCGTTC
ACACCAACTTCGGACGGCTTGCAGACGACCGCGTTGCTACTCACAGGTCG
TCGACCCGACGCTCCACCGTACCTGGGGCCAGGAGCATCAGAGAGCAGCA
GCGAAGCGACCTACCTGTCGTTGCTTTGTGACCTGGAAGAGGCCAAGAAG
AAGGGTAGAAAGGGTTGCGGCACTGACATGACGACGACGCACACGGTGCC
GCCCAGCCATATCGCAGGGCTACTGCGGCAGGAGATTGCCAGGCAGAAAA
ATCTGGTACGTTTCATCATCCTCAAGTCCTTATCCACATCTACATTCCTT
TTTCCTGACTTCTCCTCTCTCCCTTCCCTCCTACCTCTCTTCCTCCTCCC
ATTTTTAGATCGCTCAGGACGCTGCCCGTTTCCAGTCTTTTCAGGCGTCC
CTGTTCTACACCCAACAAATCTATGAGCATGGCCTTAAAAAGGTAGAGAA
ATGCGCGACATCGAAGGTATACAATAAGGAGATGAATGGCATGTTGAAAG
ACACCATCCGACGGACACTGGAAGGGTTGCGAGCTGGAGGAGAGGGAGGA
GAGATAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGAGGAGGAGAAGG
AGAAGAAGGGGGGGAGTGAACGAGGAGGGGGGGAAGATTCTTGATGTGAG
TAGTAAAAAGACAGCCATGTATCTAAATGATTCAAATATTAAGAAAGAAA
TTAAAGGAGGAAAGCATGAACCTAGAACAACGCCCTCTCCTCTTGTTTAT
CCATCTGTATTTTTCTTTTTTCAGTTTTCTTCACCACAATGGATCTCTCT
CACTTACTACTGCTGCTACTACTGCTGTGGCTGCTGCTGTTGCTGCTGTT
TTCTTTTTTCTCTTCCTTATCTTTCATGCCTCTTCCTCCTCCTCCTCAAC
GTATTACATGCTTCATTTTTAAATTTTTCGTGTACATGTAAGTGTGCATC
TTTCTCTCTTCCTCCTTCTTTCCTCCTTTCACTCGCTCATGCACATACAT
ACGGACGGACGCGCAAACACAAACCCTCCCTCTCTTTCCATTTTGTCCTA
CTTGCCTTCTTCCTGCTCCCTCACTCGCGATGTGCGGATAAATCCCCCGC
CATGCTGCTCATCCTCCTCCTCTTCCTTCTCCTCCTCCTTCTTTTCCTCA
CCTCCCCCGACGTCCTTCCCTGGGACTCTCCGCTATACACTCGCACCTAA
TTACGACGCTCAAAATACGTCCCTATCCGTCCAAAGCCCACCTGCACCTC
GTCCGCTATACACACAAGAGGAGAGACGGGAGGGGCAGGGGTACTCCTAT
CTCCCTTCCTTCTCCCATTGCTTCTCTTCTCGTTCCTTGCCCGCCTTACA
ACTTCATGGGCTTAGGCATCTTCAAAGGGGAAAGCCCTTGTTTGAAGGGA
GAGGTGCGTGAAGGAGAGATGCCCTTGGGCTGCTGGGAGGAGGGAGGGGA
GGAGGACGAAGGGGAGGGGTTGACACGGCTTGCGGCTTGAGGCATGGGGG
TTGGAGAGGCTGGCTCTTGTTGTGGTTGTTGCGGCTAAAGGAAGGAGGGA
AGGAGGGAGGGCGGGAGGGAGGGCGGAAGAAAGGAAGTTAGAACCGAGCG
GGGCGGGTCGTAGTACACCTAGTTATGGCAATCTTGTGGTACCCTCCCTC
TGTCCCTTCAGACAGTGCAGTGCGTTATGAGGCAAGAGAGGAGACATAAG
CATCTATACGCCTCATGCTGTCCTTATCTCTCTCTGTCGTGGTTTAAAGA
CAGTCCAAATTTTCATTTGTTCCTCTCGTTCCTCCATCTATCGCAGATGT
CAAAGACGTCAAGAGACCCAGCCTCGGTCGAGACCGCATAACCCTATTTG
GACCGCTCTAATTCGAGTTCGGCACCCGTGACATGTAAAGGTGAGCGCTC
ATGAAGCGCATGCACAATGCCTCTTCGGTGGGAACACAGCGCACATGCAG
CGGGGTATCTGTGGATCCTCCCTATCCCTCCCTCCCTGACCCTCCCATCC
TCGCACACACGTACCTGATGGTCCGGCTGCATCTTTCTAATTTCCTCTTT
CTGGTTGTGCTGTGGTGACGGGGGGGATAGGCAGGGCGTTAGGGATGAGG
GAGGCCTGGATCTGGAATGCATCTCCGGAAGTCGTCATCATTCAAGTGCA
CGCGTGCGTGGACGGTTGGACAAACAGTCCATGGGGCAGGAAGTCGCCAG
GGGGCATTTCGAAATTAAACAATGCATTAAGTGAGATACAGAGAGACATC
TGCGAGATGAGGCAGGGGTCATCCCAATGCAAAAAAATGATCGGCATCAC
AACCGACGAGCTTTCACTGGAAAGGGGAGGGAGGCAGGCTCGCACTATAA
TCGAGCGATTTTACACATAGAGGTCAAGGGACATGTCACTCAATCTACAG
GGTCACACATCACACAAGTAGACAGACACTCACTCAACGTAAATCTTTCT
GAAGGGTTGTCTGCGAGGATTAAGGAAAATGTCATTCATTCATTTTACCT
TTCGAGTGGCAAAGTGCCCACCGACAAAGACCTCCCCTTGAGCCTTCCAT
GGGCCCTCCCTGCGAGCTTGGTGGGGGTGTCACGTTGAGTATCGAATAGC
CCTCCCAAGTGGTGTGTATGTGTGTGTGTGTGTTCCTGTCACTGTGGTGC
CGTCTCTTTTCCTCTCTCTCTCTTAATTCTGGTGAGCGCAACTAAAGTAA
AAAGCTTCCAAGAGAGAAATCTTGACACCACGAT
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Coding sequence (CDS) from alignment at chr3:145275..148158+

>NO03G00460.2 ID=NO03G00460.2|Name=NO03G00460.2|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr3:145275..148158+ (Nannochloropsis oceanica)
ATGGACGCTACTCGGTCCCTCGAGGATGCGCAACGCACCATGCGCTTGAA
TGAAAAGACGACCGCGTTGCTACTCACAGGTCGTCGACCCGACGCTCCAC
CGTACCTGGGGCCAGGAGCATCAGAGAGCAGCAGCGAAGCGACCTACCTG
TCGTTGCTTTGTGACCTGGAAGAGGCCAAGAAGAAGGGTAGAAAGGGTTG
CGGCACTGACATGACGACGACGCACACGGTGCCGCCCAGCCATATCGCAG
GGCTACTGCGGCAGGAGATTGCCAGGCAGAAAAATCTGATCGCTCAGGAC
GCTGCCCGTTTCCAGTCTTTTCAGGCGTCCCTGTTCTACACCCAACAAAT
CTATGAGCATGGCCTTAAAAAGGTAGAGAAATGCGCGACATCGAAGGTAT
ACAATAAGGAGATGAATGGCATGTTGAAAGACACCATCCGACGGACACTG
GAAGGGTTGCGAGCTGGAGGAGAGGGAGGAGAGATAGGAGGAGGAGGAGG
AGGAGAAGGAGGAGAAGGAGGAGGAGAAGGAGAAGAAGGGGGGGAGTGA
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Synonyms
Publications