NO02G02620, NO02G02620 (gene) Nannochloropsis oceanica

Overview
NameNO02G02620
Unique NameNO02G02620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2311
Alignment locationchr2:726310..729302 +

Link to JBrowse

Properties
Property NameValue
DescriptionSugar transporter, transmembrane protein 144
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:726310..729302 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015144carbohydrate transmembrane transporter activity
GO:0015144carbohydrate transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0034219carbohydrate transmembrane transport
GO:0034219carbohydrate transmembrane transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR010651Sugar_transport
IPR012435TMEM144
Homology
[Close]
BLAST of NO02G02620 vs. NCBI_GenBank
Match: NP_001003999.1 (transmembrane protein 144 precursor [Danio rerio] >AAH80225.1 Zgc:100814 [Danio rerio] >AAI52622.1 Zgc:100814 [Danio rerio])

HSP 1 Score: 233.8 bits (595), Expect = 9.400e-58
Identity = 149/402 (37.06%), Postives = 207/402 (51.49%), Query Frame = 0 
Query:    4 SDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAGLGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKPTQSLRATGAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEHGADVFLPSLVGPPRFIAGVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 406
            SD   G+++  V+A+ FGSNF+PVK  ETG+G+ FQ+  C A+W   L V      P   PL +LGGA+W TGN+  VP +K +GL L LLIW   N+ +GWASS FG  G+ A+ V+ P LNY GA V + + + + FVK T   R+T +                                                              D+   D   P +    RF+ G   A+ AGLL+GSSF    YI +HA  P S Y+     + LD+VFA ++GIFL S+ YFLL             A  R    ++P  +LP F SG++W VA   WF+AN  L+++ V+FPIIT+ PGL+A++WGV+VF E++G RN   L  AF L ++  L+ AFSK
Sbjct:   44 SDLTYGFISCAVSAVFFGSNFVPVKKIETGDGMFFQWILCAAIWTVSLVVNIILNSPKFWPLVMLGGAIWATGNITVVPIVKTIGLGLGLLIWASFNLLLGWASSRFGWFGIGAETVSKPVLNYCGAGVCLFSAIVFFFVK-TDVQRSTTS-------------------------------------------EETPLLIDHVVNAESVVATDDSWVDALSPRM---KRFV-GSFLAVVAGLLYGSSFVPVLYIKNHASDPDSPYNGASQFD-LDYVFAQYSGIFLASTVYFLLYC-----------AIKRNKPQVFPKAVLPGFLSGIMWGVATCCWFLANHYLSAV-VSFPIITTVPGLIAALWGVLVFKEVKGCRNYIVLIFAFCLVLSGALMTAFSK 384
[Close]
BLAST of NO02G02620 vs. NCBI_GenBank
Match: XP_017205626.1 (PREDICTED: transmembrane protein 144 isoform X1 [Oryctolagus cuniculus])

HSP 1 Score: 233.8 bits (595), Expect = 9.400e-58
Identity = 147/405 (36.30%), Postives = 207/405 (51.11%), Query Frame = 0 
Query:    4 SDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAGLGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVK---PTQSLRATGAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEHGADVFLPSLVGPPRFIAGVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 406
            +D AIGY+   +A L FGSNF+P+K C+TG+G+  Q+  C A+WL  L V      P   PLA+LGG +W TGN+  VP IK +GL L +LIWG  N   GWASS FG  G+ A+ V  P LNY+GA ++V++   +LF+K   P  +      PL                                                                +D ++  L    R + G   A+ +G+L+GS+F    YI DH+    S+Y+     + LD+VFAHF+GIFLTS+ YFL   ++   S             LYP  +LP F S +LWA+A   WF+AN  L+++ V+FPIIT+ PG +A+MWGV +F EI+G +N   +  AF + VT+ L  AFSK
Sbjct:   83 TDPAIGYICSSIAILLFGSNFVPLKKCDTGDGMFLQWILCAAIWLVALVVNLILHCPKFWPLAMLGGCIWATGNIAVVPIIKTIGLGLGILIWGSFNALTGWASSRFGWFGMDAEEVPKPLLNYTGAGLSVVSAFIFLFIKSEIPNNTCSVDTTPL-----------------------------------------------IAEHVINTAQDSCPSDSSDSWVDKLSTVHRRLVGCSLAVISGVLYGSTFVPIIYIKDHSKRNDSTYAGASQYD-LDYVFAHFSGIFLTSTVYFLAYCVVMKNSP-----------KLYPEAVLPGFLSEVLWAIATCCWFIANHSLSAV-VSFPIITAGPGFIAAMWGVFMFKEIQGLKNYLLMTLAFCIIVTAALCTAFSK 427
[Close]
BLAST of NO02G02620 vs. NCBI_GenBank
Match: XP_018970691.1 (PREDICTED: transmembrane protein 144-like [Cyprinus carpio])

HSP 1 Score: 233.8 bits (595), Expect = 9.400e-58
Identity = 149/404 (36.88%), Postives = 206/404 (50.99%), Query Frame = 0 
Query:    4 SDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAGLGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKPTQSLRATG--APLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEHGADVFLPSLVGPPRFIAGVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 406
            SD   G+++  VA + FGSNF+PVK  ETG+G+ FQ+  C A+W   L V      P   PL +LGGA+W TGN+  VP +K +GL L LLIW   N+ +GWASS FG  G+ A+ V+ P LN  GA + +L+ + + FVK      AT    PL                                                                 D ++ +L    + + G   A+ AGLL+GSSF    YI +HA  P S YS     + LD+VFA ++GIFLTS+ YF+L   +             RP  ++P  +LP F SG++W VA   WF+AN  L+++ V+FPIIT+ PGL+A++WGVVVF E++G RN   L  AF L ++  LL AFSK
Sbjct:   50 SDLTYGFISCAVAVVFFGSNFVPVKKIETGDGMFFQWILCAAIWTVSLVVNIILHSPKFWPLVMLGGAIWATGNITVVPIVKTIGLGLGLLIWASFNLLLGWASSRFGWFGIGAETVSKPVLNSCGAGLCLLSAIVFFFVKTDVQRSATSEETPLLVDHTVNSESVVATD--------------------------------------------------DSWVDALTPRSKRLVGTFLAVVAGLLYGSSFVPVLYIKNHASDPDSQYSGASQFD-LDYVFAQYSGIFLTSTVYFILYCAI----------KKNRP-QVFPKAVLPGFLSGIMWGVATCCWFLANHYLSAV-VSFPIITTVPGLIAALWGVVVFKEVKGWRNYIVLVVAFCLVLSGALLTAFSK 390
[Close]
BLAST of NO02G02620 vs. NCBI_GenBank
Match: OXB70198.1 (hypothetical protein H355_015352, partial [Colinus virginianus])

HSP 1 Score: 233.4 bits (594), Expect = 1.200e-57
Identity = 148/406 (36.45%), Postives = 212/406 (52.22%), Query Frame = 0 
Query:    4 SDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAGLGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVK---PTQSLRATGAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEHGADVFLPSLVGP-PRFIAGVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 406
            +D AIG+ +  VA L FG+NF+PVK  +TG+G+ FQ+  C ++W+  L V   +  P   PLA++GG +W TGN+  VP IK +GL+L LLIW   N+  GWASS FG  G+  + VA P LNY GA +++L+ + +LF+K    T S      PL                                                             E  +DV   + + P  R + G   A+ AG+L+GSSF    YI DH     ++Y+     + LD+VFAHF+GIFLTS+ YFL+             A  +    +YP  +LP F SG+LWA+A   WF+AN  L+++ V+FPIIT+ PGL+A++WGV+VF EI+G +N   L+ AF + +   L  AFSK
Sbjct:   35 TDLAIGFTSSTVAVLLFGTNFVPVKKYDTGDGMFFQWILCASIWVVSLVVNLIQSCPRFWPLAMVGGFVWATGNITVVPIIKTIGLALGLLIWASFNLLTGWASSRFGWFGIDPEEVARPVLNYIGAGLSLLSAVIFLFIKTEVQTSSASLESTPL----------------------------------------------------LTECSVNASESTSDVSWVNRLSPVKRRLVGCSLAVVAGVLYGSSFVPVLYIKDHGRRNETTYAGASQFD-LDYVFAHFSGIFLTSTIYFLIYC-----------AVRKNKPIVYPQAILPGFVSGVLWAIANCCWFIANHYLSAV-VSFPIITAGPGLIAALWGVLVFKEIKGVKNYLLLSVAFCIVLAGSLSTAFSK 375
[Close]
BLAST of NO02G02620 vs. NCBI_GenBank
Match: KTF87427.1 (hypothetical protein cypCar_00019904 [Cyprinus carpio])

HSP 1 Score: 232.6 bits (592), Expect = 2.100e-57
Identity = 147/404 (36.39%), Postives = 206/404 (50.99%), Query Frame = 0 
Query:    4 SDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAGLGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKPTQSLRATG--APLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEHGADVFLPSLVGPPRFIAGVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 406
            SD   G+++  VA + FGSNF+PVK  ETG+G+ FQ+  C A+W   L V      P   PL +LGGA+W TGN+  VP +K +GL L LLIW   N+ +GWASS FG  G+ A+ V+ P LN+ GA + +L+ + + FVK      AT    PL                                                                 D ++ +L    + + G   A+ AGLL+G+SF    YI +HA  P S YS     + LD+VFA ++GIFLTS+ YF+L             A  +    ++P  +LP F SG++W VA   WF+AN  L+++ V+FPIIT+ PGL+A++WGVVVF E++G RN   L  AF L ++  LL AFSK
Sbjct:   50 SDLTYGFISCAVAVVFFGSNFVPVKKIETGDGMFFQWILCAAIWTVSLVVNIILHSPKFWPLVMLGGAIWATGNITVVPIVKTIGLGLGLLIWASFNLLLGWASSRFGWFGIGAESVSKPVLNFCGAGLCLLSAIVFFFVKTDVQRSATSEERPLLIDHAVNSESVVATD--------------------------------------------------DSWVDALTPRTKRLVGSFLAVVAGLLYGTSFVPVLYIKNHASDPDSQYSGASQFD-LDYVFAQYSGIFLTSTVYFVLYC-----------AIKKNKPQVFPKAVLPGFLSGIMWGVATCCWFLANNYLSAV-VSFPIITTVPGLIAALWGVVVFKEVKGWRNYIVLIVAFCLVLSGALLTAFSK 390
[Close]
BLAST of NO02G02620 vs. NCBI_GenBank
Match: KFO74347.1 (Transmembrane protein 144, partial [Cuculus canorus])

HSP 1 Score: 232.3 bits (591), Expect = 2.700e-57
Identity = 148/407 (36.36%), Postives = 213/407 (52.33%), Query Frame = 0 
Query:    4 SDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAGLGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKP-----TQSLRATGAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEHGADVFLPSLVGPPRFIAGVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 406
            +D AIG+ +  VA L FG+NF+PVK  +TG+G+ FQ+  C ++W+  L V   +  P   PLA++GG LW TGN+  VP +K +GL+L LLIW   N+  GWASS FG  G+  + V+ P LNY GA +++L+ + +L +KP     + SL +T  PL                                                            ++   D ++  L    + + G   A+ AG+L+GSSF    YI DH     + Y+     + LD+VFAHF+GIFLTS+ YFL+             A  +    +YP  +LP F SG+LWA+A   WF+AN  L+++ V+FPIIT+ PGLVA+MWGV+VF EI+G RN   L+ AF + +   L  AFSK
Sbjct:    5 TDLAIGFTSSAVAVLLFGTNFVPVKKFDTGDGMFFQWILCASIWIISLVVNLIQNCPRFWPLAMVGGFLWATGNVTVVPIVKTIGLALGLLIWASFNLLTGWASSRFGWFGIDPEEVSRPILNYIGAGLSLLSAVIFLAIKPEVQRSSSSLEST--PL---------------------------------------------------LRESSINVSEDTSDDSWVNRLAPAKKRLIGCSLAVVAGILYGSSFVPVLYIKDHGRANETIYTGASQFD-LDYVFAHFSGIFLTSTVYFLIYC-----------AVRKNKPNVYPKAILPGFVSGVLWAIANCCWFIANHYLSAV-VSFPIITAGPGLVAAMWGVLVFKEIKGLRNYALLSVAFCIILAGSLSTAFSK 345
[Close]
BLAST of NO02G02620 vs. NCBI_GenBank
Match: XP_009556750.1 (PREDICTED: transmembrane protein 144-like [Cuculus canorus])

HSP 1 Score: 232.3 bits (591), Expect = 2.700e-57
Identity = 148/407 (36.36%), Postives = 213/407 (52.33%), Query Frame = 0 
Query:    4 SDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAGLGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKP-----TQSLRATGAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEHGADVFLPSLVGPPRFIAGVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 406
            +D AIG+ +  VA L FG+NF+PVK  +TG+G+ FQ+  C ++W+  L V   +  P   PLA++GG LW TGN+  VP +K +GL+L LLIW   N+  GWASS FG  G+  + V+ P LNY GA +++L+ + +L +KP     + SL +T  PL                                                            ++   D ++  L    + + G   A+ AG+L+GSSF    YI DH     + Y+     + LD+VFAHF+GIFLTS+ YFL+             A  +    +YP  +LP F SG+LWA+A   WF+AN  L+++ V+FPIIT+ PGLVA+MWGV+VF EI+G RN   L+ AF + +   L  AFSK
Sbjct:   16 TDLAIGFTSSAVAVLLFGTNFVPVKKFDTGDGMFFQWILCASIWIISLVVNLIQNCPRFWPLAMVGGFLWATGNVTVVPIVKTIGLALGLLIWASFNLLTGWASSRFGWFGIDPEEVSRPILNYIGAGLSLLSAVIFLAIKPEVQRSSSSLEST--PL---------------------------------------------------LRESSINVSEDTSDDSWVNRLAPAKKRLIGCSLAVVAGILYGSSFVPVLYIKDHGRANETIYTGASQFD-LDYVFAHFSGIFLTSTVYFLIYC-----------AVRKNKPNVYPKAILPGFVSGVLWAIANCCWFIANHYLSAV-VSFPIITAGPGLVAAMWGVLVFKEIKGLRNYALLSVAFCIILAGSLSTAFSK 356
[Close]
BLAST of NO02G02620 vs. NCBI_GenBank
Match: XP_016084431.1 (PREDICTED: transmembrane protein 144-like [Sinocyclocheilus grahami])

HSP 1 Score: 232.3 bits (591), Expect = 2.700e-57
Identity = 147/404 (36.39%), Postives = 206/404 (50.99%), Query Frame = 0 
Query:    4 SDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAGLGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKPTQSLRATG--APLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEHGADVFLPSLVGPPRFIAGVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 406
            SD   G+++  VA + FGSNF+PVK  ETG+G+ FQ+  C A+W   L V      P   PL +LGGA+W TGN+  VP +K +GL + LLIW   N+ +GWASS FG  G+ A+ V+ P LN  GA + +L+ + + FVK      AT    PL                                                                 D ++ +L    + + G   A+ AGLL+GSSF    YI +HA  P S YS     + LD+VFA ++GIFLTS+ YF+L   +             RP  ++P  +LP F SG++W +A   WF+AN  L+++ V+FPIIT+ PGL+A++WGVVVF E++G RN   L  AF L ++  LL AFSK
Sbjct:   49 SDLTYGFISCAVAVVFFGSNFVPVKKIETGDGMFFQWILCAAIWTVSLVVNIILHSPKFWPLVMLGGAIWATGNITVVPIVKTIGLGVGLLIWASFNLLLGWASSRFGWFGIGAETVSKPVLNSCGAGLCLLSAIVFFFVKTDVQRSATSEETPLLIDHTVNSESVVATD--------------------------------------------------DSWVDALTPRTKRLVGTFLAVVAGLLYGSSFVPVLYIKNHASDPDSQYSGASQFD-LDYVFAQYSGIFLTSTVYFILYCAI----------KKNRP-QVFPKAVLPGFLSGIMWGIATCCWFLANHYLSAV-VSFPIITTVPGLIAALWGVVVFKEVKGWRNYIVLVVAFCLVLSGALLTAFSK 389
[Close]
BLAST of NO02G02620 vs. NCBI_GenBank
Match: XP_016414386.1 (PREDICTED: transmembrane protein 144-like [Sinocyclocheilus rhinocerous])

HSP 1 Score: 232.3 bits (591), Expect = 2.700e-57
Identity = 147/404 (36.39%), Postives = 206/404 (50.99%), Query Frame = 0 
Query:    4 SDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAGLGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKPTQSLRATG--APLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEHGADVFLPSLVGPPRFIAGVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 406
            SD   G+++  VA + FGSNF+PVK  ETG+G+ FQ+  C A+W   L V      P   PL +LGGA+W TGN+  VP +K +GL + LLIW   N+ +GWASS FG  G+ A+ V+ P LN  GA + +L+ + + FVK      AT    PL                                                                 D ++ +L    + + G   A+ AGLL+GSSF    YI +HA  P S YS     + LD+VFA ++GIFLTS+ YF+L   +             RP  ++P  +LP F SG++W +A   WF+AN  L+++ V+FPIIT+ PGL+A++WGVVVF E++G RN   L  AF L ++  LL AFSK
Sbjct:   49 SDLTYGFISCAVAVVFFGSNFVPVKKIETGDGMFFQWILCAAIWTVSLVVNIILHSPKFWPLVMLGGAIWATGNITVVPIVKTIGLGVGLLIWASFNLLLGWASSRFGWFGIGAETVSKPVLNSCGAGLCLLSAIVFFFVKTDVQRSATSEETPLLIDHTVNSESVVATD--------------------------------------------------DSWVDALTPRTKRLVGTFLAVVAGLLYGSSFVPVLYIKNHASDPDSQYSGASQFD-LDYVFAQYSGIFLTSTVYFILYCAI----------KKNRP-QVFPKAVLPGFLSGIMWGIATCCWFLANHYLSAV-VSFPIITTVPGLIAALWGVVVFKEVKGWRNYIVLVVAFCLVLSGALLTAFSK 389
[Close]
BLAST of NO02G02620 vs. NCBI_GenBank
Match: XP_018428908.1 (PREDICTED: transmembrane protein 144 [Nanorana parkeri])

HSP 1 Score: 232.3 bits (591), Expect = 2.700e-57
Identity = 147/402 (36.57%), Postives = 209/402 (51.99%), Query Frame = 0 
Query:    4 SDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAGLGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKPTQSLRATGAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEHGADVFLPSLVGPPRFIAGVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 406
            S+  IG+ + +++   FGSNF+PVK  +TG+G+ FQ+  C ++W+  L V      P   PLA++GG +W TGN+  VP +K +GL L LL+W  +N+  GWASS FG+ G+  + V  P LNY+GA+++ L+ + +LFVK T     T  P                                                             DE   D     L    R I G V A+ AG+L+GS F    YI DH+    S+Y+     + LD+VFAH++GIFLTS+ YFL+             A  +    +YP  +LP F SG LWA+A   WF+AN  L+++ V+FPIIT+ PGLVA++WGV+VF EI+GRRN   L  AF + ++  LL AFSK
Sbjct:   17 SNLVIGFTSSVISVFLFGSNFVPVKKFDTGDGMFFQWILCASIWIVALVVNLILRCPKFWPLAMVGGCVWATGNITVVPIVKTVGLGLGLLLWASTNLLTGWASSRFGMFGIDPEVVQRPYLNYAGASLSALSAVIFLFVK-TDIKSVTSEP-------------------------------------------ETTPLLRNSINSNENTLTDESWVD----KLSSLQRRIIGSVMAIVAGVLYGSCFIPVLYIKDHSKHNDSAYAGASQFD-LDYVFAHYSGIFLTSTVYFLIYC-----------AVMKNRPKVYPEVILPGFISGFLWAIANCCWFLANNYLSAV-VSFPIITAGPGLVAALWGVLVFKEIKGRRNYLLLVLAFCIVLSGSLLTAFSK 357
The following BLAST results are available for this feature:
BLAST of NO02G02620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
NP_001003999.19.400e-5837.06transmembrane protein 144 precursor [Danio rerio] ... [more]
XP_017205626.19.400e-5836.30PREDICTED: transmembrane protein 144 isoform X1 [O... [more]
XP_018970691.19.400e-5836.88PREDICTED: transmembrane protein 144-like [Cyprinu... [more]
OXB70198.11.200e-5736.45hypothetical protein H355_015352, partial [Colinus... [more]
KTF87427.12.100e-5736.39hypothetical protein cypCar_00019904 [Cyprinus car... [more]
KFO74347.12.700e-5736.36Transmembrane protein 144, partial [Cuculus canoru... [more]
XP_009556750.12.700e-5736.36PREDICTED: transmembrane protein 144-like [Cuculus... [more]
XP_016084431.12.700e-5736.39PREDICTED: transmembrane protein 144-like [Sinocyc... [more]
XP_016414386.12.700e-5736.39PREDICTED: transmembrane protein 144-like [Sinocyc... [more]
XP_018428908.12.700e-5736.57PREDICTED: transmembrane protein 144 [Nanorana par... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574361gene_852Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02620.1NO02G02620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G02620.2NO02G02620.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G02620.3NO02G02620.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02620.1NO02G02620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G02620.2NO02G02620.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G02620.3NO02G02620.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02620 ID=NO02G02620|Name=NO02G02620|organism=Nannochloropsis oceanica|type=gene|length=2311bp
ACAGCTTACCTTCGCAGACGCTCCCTTTCACCATCCTCGAGACATCAGCC
ACCAGCCCTCTTCTCGGCATCATCGGCACGCCCCATATCAACCTCAACCA
TGGCGGTCAGCGACACCGCCATCGGGTACCTGGCCATGCTCGTAGCGGCC
CTGGGCTTCGGCTCCAATTTTCTGCCCGTCAAAAAgtaaatatacaaagt
ggggatgaggtagtaggcgttttgtgtttggctggcaccctcagaactgc
cttcagccggctgaacactggaaatatcatcacagcgctaatccaaggag
acgaagcaggggcggcacaattcaagcccgccctttccctctctcctctt
ccatgaccatacccccaccctaaccttcaccccttcctcacacagTTGCG
AAACCGGAAATGGTATTGCATTCCAGTTCTTCTTCTGTTGGGCCGTCTGG
TTGGCTGGACTCGGAGTGGGGGCCCATCGTGGCTTCCCTTCCACACCACC
CTTAGCTCTCCTTGGCGGTGCTTTGTGGTGTACAGGCAACCTCCTGTCAG
TCCCCGCCATTAAGCTCATGGGCTTAAGCCTCTCCCTCCTCATCTGGGGC
ATCAGTAATATGTGCGTGGGCTGGGCCTCGAGTACCTTTGGGATCTTGGG
GGTGAAGGCGCAGCATGTTGCCAACCCTGCCTTAAATTATAGTGGAGCAG
CCGTAGCGGTCCTGGCGCTGTTAGCCTACCTATTTGTTAAACCCACGCAG
TCTCTTCGCGCCACAGGGGCACCTTTGTCCTCCTCCTCCTCCTCGTCGTC
GTCTTCATCGTCCAAGCAGGGGTCAAATAGGATGTACGCTGGGAGAATGA
GCCCGTCGCTTCGAAGTGGTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGG
GGAATGCACCGACTGGACGCAAGGGGAGGAGGAGCAGCTGGAGGCAACGG
AGGGCGGGACGAGCATGGAGGTAGGGATGTAAGGAAGGACATATTGGGCT
TCCCTTCTGTTGTGCTTTCTCTTACCCTCCCCATCCCCTTCCATCTCCTT
GCTTTTCCTTTTTGCCTTCCCACCGAGCTACTGATCACTGACGTATTACC
TAATACCATTTCCGTCTCTTTCGTCGCGCCCAATACAGCTGACGTCTTTC
TCCCTTCCCTCGTCGGCCCCCCCCGTTTCATTGCCGGTGTTGTCGCCGCT
CTCACCGCCGGCCTGCTCTTCGGCTCTTCGTTTAATGCTAGCTACTACAT
CATGGACCATGCCTACATCCCGTCCTCGTCCTACTCCAAGTACCAAGACC
TGGAAATGCTCGATTTTGTCTTCGCGCATTTCAATGGCATTTTCCTGACA
TCTTCCACCTACTTCCTTCTTGCCCTCCTTCTCCACCATCTGTCCTCCTG
CAAGGAAAAAGCTGCCGCAAGAAGACCTTTCACCCTCTATCCCGCTACCC
TCCTCCCGGCGTTTGCCTCCGGCTTGCTTTGGGCCGTTGCGATGATTGCT
TGGTTTGTGGCGAATCAGAAATTGACCTCTTTATCTGTGACTTTTCCGAT
AATCACTTCGACACCGGGGCTGGTGGCCTCGATGTGGGGGGTGGTGGTGT
TCGGGGAGATAAGAGGTAGGAGGAATCTGTTCACCCTGGCCGGGGCCTTT
GGATTAACTGTGACGAGTTGTTTGTTGATTGCTTTTTCGAAGTGACCAGA
CGGTGGGTGGACGGGGGAGTACATAAATATGACCATGAATGAACGAGGGA
ACAAGGTGAATATGTGAAGACCGCTGGAGGGAGAAGTCACAAGAAAGGAG
CGGATGGATGAGTGACAGCTATATATATATATATATGTAAATGTTTTTTA
GCACAAAGCAATTTGAAGTAAGAAATAGATAGCACCGTCATTTTGAACTC
AACCGGAGAAATCTCTGCCCTCTTAAGGTTCTAAACACATTTTCCCTCTC
TTATTCCTTTGGCACCTCTTCTCACCTACTCATGCACTAATTTCGTCCTC
CTGCACCCGGCATACTAAGGCCTTTCCATCACTCGTCTGGACATGCCTTG
CCTCCCTTAAATCCTCCATGACTTGCGATGCATGCTTCGCCAAAAGATGC
GCTCGTGCCCTGACGGTTACGGACGATCGAGCTGCCAACGTATCGATCGC
CCCTCCCCCGCCGCGTCTTCCCCCGCTACCTCCTCCTCCTCCACAGCCTG
AATGATGTCGTTGTCGTTCTTGTTCTTGTTGTGGTAGCAATGACGATGAT
GATGGCGGCGATTCTTTTTCATCATCATCATAATCTTCTTCTTCTTCTTC
TTCTTCTTCTT
back to top

protein sequence of NO02G02620.1

>NO02G02620.1-protein ID=NO02G02620.1-protein|Name=NO02G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLA
LLAYLFVKPTQSLRATGAPLSSSSSSSSSSSSKQGSNRMYAGRMSPSLRS
GLLVEEEEEEGGMHRLDARGGGAAGGNGGRDEHGADVFLPSLVGPPRFIA
GVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFN
GIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWA
VAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFT
LAGAFGLTVTSCLLIAFSK*
back to top

protein sequence of NO02G02620.2

>NO02G02620.2-protein ID=NO02G02620.2-protein|Name=NO02G02620.2|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MAVSDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAG
LGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISN
MCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKPTQSLR
ATGAPLSSSSSSSSSSSSKQGSNRMYAGRMSPSLRSGLLVEEEEEEGGMH
RLDARGGGAAGGNGGRDEHGADVFLPSLVGPPRFIAGVVAALTAGLLFGS
SFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLAL
LLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLT
SLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLL
IAFSK*
back to top

protein sequence of NO02G02620.3

>NO02G02620.3-protein ID=NO02G02620.3-protein|Name=NO02G02620.3|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MAVSDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAG
LGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISN
MCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKPTQSLR
ATGAPLSSSSSSSSSSSSKQGSNRMYAGRMSPSLRSGLLVEEEEEEGGMH
RLDARGGGAAGGNGGRDEHGGRDVRKDILGFPSVVLSLTLPIPFHLLAFP
FCLPTELLITDVLPNTISVSFVAPNTADVFLPSLVGPPRFIAGVVAALTA
GLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSST
YFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFV
ANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLT
VTSCLLIAFSK*
back to top
Synonyms
Publications