NO02G02620.1, NO02G02620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02620.1
Unique NameNO02G02620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2825
Alignment locationchr2:726310..729302 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:726310..729302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G02620.1 vs.
Match: EWM30412.1 (sugar transporter [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 6.300e-49
Identity = 107/158 (67.72%), Postives = 125/158 (79.11%), Query Frame = 0 
Query:  173 MDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAAR-----------RPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 320
            MD A  P SS+++YQDL+MLDFVFAHF+GIFL SS++FLLALLLH L+    +   +           RPF LYPA LLPAF +GL+WAVAM+AWFVANQ+LTSL+VTFPIIT+TPGLVAS+WGVVVFGEIRGRRNL  LA AFGLT TSC LIA S+
Sbjct:    1 MDRAAEPDSSFARYQDLQMLDFVFAHFSGIFLASSSFFLLALLLHALAGAYSRRGGKKGPSGFSPTAFRPFELYPAALLPAFLAGLVWAVAMVAWFVANQRLTSLAVTFPIITATPGLVASLWGVVVFGEIRGRRNLGVLAAAFGLTATSCGLIAASR 158
The following BLAST results are available for this feature:
BLAST of NO02G02620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30412.16.300e-4967.72sugar transporter [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02620NO02G02620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02620.1NO02G02620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02620.1.cds1NO02G02620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02620.1.cds2NO02G02620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02620.1 ID=NO02G02620.1|Name=NO02G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2825bp
CCTCTGATTTATCTCTTTTGGACTGTGCTGTCTCTTCGCTTTCTCACCTC
CTCGACTCTATTTCGCGTGAAAGCCAATTCCGAATCTGGATTTTTTTACT
TTGTTTACTTCTAAAACAACTCCTAGTATATTCCCCTTATGATTAATGTC
CTTCCCTTCTCTTTTTTCTTCCAGGCTACCCCTTTGATATATTTACCGTG
TCTCAATTTTGGGAAACATATTGAATTTCTTAAATTATCATTGTTCGATC
TTGGTCACTGTTGGCTGATGTTGTTTTCTGTTTTCGGAGAGCAACAAAAT
ATATGGTACCATTATGTACCGTGATGACGTGTTAGGTGCCAAAGTGTGGA
AAATTACGAGTTCGAGTGTTTTTAAATTCATCAACCTCCTGTTATTATCA
CAATGCCCCGGGAAACCACTTAATGACGTCAAGGGCAAAAAAACAAGCTA
GGTCATGTCATTTGTGGAATGGCTCAGGAGCAGTTTAAGTGTGCCATGGT
AGGGGTCAGGAGGAGGGCTCTAGCCTCGGAGGTCCGAGCGGCTCGTATCC
GCGGGGCAGTCGAACGTTTCATGAGCTTTCCCGGAAGTACTTGCACCTCC
AAATCCGAGTGCACGTATGCAGCGAGCATGTGTCGCTCCCTCTACATGCC
ACCACATGCCTGTTTCTCACTTTTCCTCTTGTACAGCTTACCTTCGCAGA
CGCTCCCTTTCACCATCCTCGAGACATCAGCCACCAGCCCTCTTCTCGGC
ATCATCGGCACGCCCCATATCAACCTCAACCATGGCGGTCAGCGACACCG
CCATCGGGTACCTGGCCATGCTCGTAGCGGCCCTGGGCTTCGGCTCCAAT
TTTCTGCCCGTCAAAAAGTAAATATACAAAGTGGGGATGAGGTAGTAGGC
GTTTTGTGTTTGGCTGGCACCCTCAGAACTGCCTTCAGCCGGCTGAACAC
TGGAAATATCATCACAGCGCTAATCCAAGGAGACGAAGCAGGGGCGGCAC
AATTCAAGCCCGCCCTTTCCCTCTCTCCTCTTCCATGACCATACCCCCAC
CCTAACCTTCACCCCTTCCTCACACAGTTGCGAAACCGGAAATGGTATTG
CATTCCAGTTCTTCTTCTGTTGGGCCGTCTGGTTGGCTGGACTCGGAGTG
GGGGCCCATCGTGGCTTCCCTTCCACACCACCCTTAGCTCTCCTTGGCGG
TGCTTTGTGGTGTACAGGCAACCTCCTGTCAGTCCCCGCCATTAAGCTCA
TGGGCTTAAGCCTCTCCCTCCTCATCTGGGGCATCAGTAATATGTGCGTG
GGCTGGGCCTCGAGTACCTTTGGGATCTTGGGGGTGAAGGCGCAGCATGT
TGCCAACCCTGCCTTAAATTATAGTGGAGCAGCCGTAGCGGTCCTGGCGC
TGTTAGCCTACCTATTTGTTAAACCCACGCAGTCTCTTCGCGCCACAGGG
GCACCTTTGTCCTCCTCCTCCTCCTCGTCGTCGTCTTCATCGTCCAAGCA
GGGGTCAAATAGGATGTACGCTGGGAGAATGAGCCCGTCGCTTCGAAGTG
GTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGGGGAATGCACCGACTGGAC
GCAAGGGGAGGAGGAGCAGCTGGAGGCAACGGAGGGCGGGACGAGCATGG
AGCTGACGTCTTTCTCCCTTCCCTCGTCGGCCCCCCCCGTTTCATTGCCG
GTGTTGTCGCCGCTCTCACCGCCGGCCTGCTCTTCGGCTCTTCGTTTAAT
GCTAGCTACTACATCATGGACCATGCCTACATCCCGTCCTCGTCCTACTC
CAAGTACCAAGACCTGGAAATGCTCGATTTTGTCTTCGCGCATTTCAATG
GCATTTTCCTGACATCTTCCACCTACTTCCTTCTTGCCCTCCTTCTCCAC
CATCTGTCCTCCTGCAAGGAAAAAGCTGCCGCAAGAAGACCTTTCACCCT
CTATCCCGCTACCCTCCTCCCGGCGTTTGCCTCCGGCTTGCTTTGGGCCG
TTGCGATGATTGCTTGGTTTGTGGCGAATCAGAAATTGACCTCTTTATCT
GTGACTTTTCCGATAATCACTTCGACACCGGGGCTGGTGGCCTCGATGTG
GGGGGTGGTGGTGTTCGGGGAGATAAGAGGTAGGAGGAATCTGTTCACCC
TGGCCGGGGCCTTTGGATTAACTGTGACGAGTTGTTTGTTGATTGCTTTT
TCGAAGTGACCAGACGGTGGGTGGACGGGGGAGTACATAAATATGACCAT
GAATGAACGAGGGAACAAGGTGAATATGTGAAGACCGCTGGAGGGAGAAG
TCACAAGAAAGGAGCGGATGGATGAGTGACAGCTATATATATATATATAT
GTAAATGTTTTTTAGCACAAAGCAATTTGAAGTAAGAAATAGATAGCACC
GTCATTTTGAACTCAACCGGAGAAATCTCTGCCCTCTTAAGGTTCTAAAC
ACATTTTCCCTCTCTTATTCCTTTGGCACCTCTTCTCACCTACTCATGCA
CTAATTTCGTCCTCCTGCACCCGGCATACTAAGGCCTTTCCATCACTCGT
CTGGACATGCCTTGCCTCCCTTAAATCCTCCATGACTTGCGATGCATGCT
TCGCCAAAAGATGCGCTCGTGCCCTGACGGTTACGGACGATCGAGCTGCC
AACGTATCGATCGCCCCTCCCCCGCCGCGTCTTCCCCCGCTACCTCCTCC
TCCTCCACAGCCTGAATGATGTCGTTGTCGTTCTTGTTCTTGTTGTGGTA
GCAATGACGATGATGATGGCGGCGATTCTTTTTCATCATCATCATAATCT
TCTTCTTCTTCTTCTTCTTCTTCTT
back to top

protein sequence of NO02G02620.1

>NO02G02620.1-protein ID=NO02G02620.1-protein|Name=NO02G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLA
LLAYLFVKPTQSLRATGAPLSSSSSSSSSSSSKQGSNRMYAGRMSPSLRS
GLLVEEEEEEGGMHRLDARGGGAAGGNGGRDEHGADVFLPSLVGPPRFIA
GVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFN
GIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWA
VAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFT
LAGAFGLTVTSCLLIAFSK*
back to top

mRNA from alignment at chr2:726310..729302+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02620.1 ID=NO02G02620.1|Name=NO02G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2993bp|location=Sequence derived from alignment at chr2:726310..729302+ (Nannochloropsis oceanica)
CCTCTGATTTATCTCTTTTGGACTGTGCTGTCTCTTCGCTTTCTCACCTC
CTCGACTCTATTTCGCGTGAAAGCCAATTCCGAATCTGGATTTTTTTACT
TTGTTTACTTCTAAAACAACTCCTAGTATATTCCCCTTATGATTAATGTC
CTTCCCTTCTCTTTTTTCTTCCAGGCTACCCCTTTGATATATTTACCGTG
TCTCAATTTTGGGAAACATATTGAATTTCTTAAATTATCATTGTTCGATC
TTGGTCACTGTTGGCTGATGTTGTTTTCTGTTTTCGGAGAGCAACAAAAT
ATATGGTACCATTATGTACCGTGATGACGTGTTAGGTGCCAAAGTGTGGA
AAATTACGAGTTCGAGTGTTTTTAAATTCATCAACCTCCTGTTATTATCA
CAATGCCCCGGGAAACCACTTAATGACGTCAAGGGCAAAAAAACAAGCTA
GGTCATGTCATTTGTGGAATGGCTCAGGAGCAGTTTAAGTGTGCCATGGT
AGGGGTCAGGAGGAGGGCTCTAGCCTCGGAGGTCCGAGCGGCTCGTATCC
GCGGGGCAGTCGAACGTTTCATGAGCTTTCCCGGAAGTACTTGCACCTCC
AAATCCGAGTGCACGTATGCAGCGAGCATGTGTCGCTCCCTCTACATGCC
ACCACATGCCTGTTTCTCACTTTTCCTCTTGTACAGCTTACCTTCGCAGA
CGCTCCCTTTCACCATCCTCGAGACATCAGCCACCAGCCCTCTTCTCGGC
ATCATCGGCACGCCCCATATCAACCTCAACCATGGCGGTCAGCGACACCG
CCATCGGGTACCTGGCCATGCTCGTAGCGGCCCTGGGCTTCGGCTCCAAT
TTTCTGCCCGTCAAAAAGTAAATATACAAAGTGGGGATGAGGTAGTAGGC
GTTTTGTGTTTGGCTGGCACCCTCAGAACTGCCTTCAGCCGGCTGAACAC
TGGAAATATCATCACAGCGCTAATCCAAGGAGACGAAGCAGGGGCGGCAC
AATTCAAGCCCGCCCTTTCCCTCTCTCCTCTTCCATGACCATACCCCCAC
CCTAACCTTCACCCCTTCCTCACACAGTTGCGAAACCGGAAATGGTATTG
CATTCCAGTTCTTCTTCTGTTGGGCCGTCTGGTTGGCTGGACTCGGAGTG
GGGGCCCATCGTGGCTTCCCTTCCACACCACCCTTAGCTCTCCTTGGCGG
TGCTTTGTGGTGTACAGGCAACCTCCTGTCAGTCCCCGCCATTAAGCTCA
TGGGCTTAAGCCTCTCCCTCCTCATCTGGGGCATCAGTAATATGTGCGTG
GGCTGGGCCTCGAGTACCTTTGGGATCTTGGGGGTGAAGGCGCAGCATGT
TGCCAACCCTGCCTTAAATTATAGTGGAGCAGCCGTAGCGGTCCTGGCGC
TGTTAGCCTACCTATTTGTTAAACCCACGCAGTCTCTTCGCGCCACAGGG
GCACCTTTGTCCTCCTCCTCCTCCTCGTCGTCGTCTTCATCGTCCAAGCA
GGGGTCAAATAGGATGTACGCTGGGAGAATGAGCCCGTCGCTTCGAAGTG
GTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGGGGAATGCACCGACTGGAC
GCAAGGGGAGGAGGAGCAGCTGGAGGCAACGGAGGGCGGGACGAGCATGG
AGGTAGGGATGTAAGGAAGGACATATTGGGCTTCCCTTCTGTTGTGCTTT
CTCTTACCCTCCCCATCCCCTTCCATCTCCTTGCTTTTCCTTTTTGCCTT
CCCACCGAGCTACTGATCACTGACGTATTACCTAATACCATTTCCGTCTC
TTTCGTCGCGCCCAATACAGCTGACGTCTTTCTCCCTTCCCTCGTCGGCC
CCCCCCGTTTCATTGCCGGTGTTGTCGCCGCTCTCACCGCCGGCCTGCTC
TTCGGCTCTTCGTTTAATGCTAGCTACTACATCATGGACCATGCCTACAT
CCCGTCCTCGTCCTACTCCAAGTACCAAGACCTGGAAATGCTCGATTTTG
TCTTCGCGCATTTCAATGGCATTTTCCTGACATCTTCCACCTACTTCCTT
CTTGCCCTCCTTCTCCACCATCTGTCCTCCTGCAAGGAAAAAGCTGCCGC
AAGAAGACCTTTCACCCTCTATCCCGCTACCCTCCTCCCGGCGTTTGCCT
CCGGCTTGCTTTGGGCCGTTGCGATGATTGCTTGGTTTGTGGCGAATCAG
AAATTGACCTCTTTATCTGTGACTTTTCCGATAATCACTTCGACACCGGG
GCTGGTGGCCTCGATGTGGGGGGTGGTGGTGTTCGGGGAGATAAGAGGTA
GGAGGAATCTGTTCACCCTGGCCGGGGCCTTTGGATTAACTGTGACGAGT
TGTTTGTTGATTGCTTTTTCGAAGTGACCAGACGGTGGGTGGACGGGGGA
GTACATAAATATGACCATGAATGAACGAGGGAACAAGGTGAATATGTGAA
GACCGCTGGAGGGAGAAGTCACAAGAAAGGAGCGGATGGATGAGTGACAG
CTATATATATATATATATGTAAATGTTTTTTAGCACAAAGCAATTTGAAG
TAAGAAATAGATAGCACCGTCATTTTGAACTCAACCGGAGAAATCTCTGC
CCTCTTAAGGTTCTAAACACATTTTCCCTCTCTTATTCCTTTGGCACCTC
TTCTCACCTACTCATGCACTAATTTCGTCCTCCTGCACCCGGCATACTAA
GGCCTTTCCATCACTCGTCTGGACATGCCTTGCCTCCCTTAAATCCTCCA
TGACTTGCGATGCATGCTTCGCCAAAAGATGCGCTCGTGCCCTGACGGTT
ACGGACGATCGAGCTGCCAACGTATCGATCGCCCCTCCCCCGCCGCGTCT
TCCCCCGCTACCTCCTCCTCCTCCACAGCCTGAATGATGTCGTTGTCGTT
CTTGTTCTTGTTGTGGTAGCAATGACGATGATGATGGCGGCGATTCTTTT
TCATCATCATCATAATCTTCTTCTTCTTCTTCTTCTTCTTCTT
back to top

Coding sequence (CDS) from alignment at chr2:726310..729302+

>NO02G02620.1 ID=NO02G02620.1|Name=NO02G02620.1|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at chr2:726310..729302+ (Nannochloropsis oceanica)
ATGGGCTTAAGCCTCTCCCTCCTCATCTGGGGCATCAGTAATATGTGCGT
GGGCTGGGCCTCGAGTACCTTTGGGATCTTGGGGGTGAAGGCGCAGCATG
TTGCCAACCCTGCCTTAAATTATAGTGGAGCAGCCGTAGCGGTCCTGGCG
CTGTTAGCCTACCTATTTGTTAAACCCACGCAGTCTCTTCGCGCCACAGG
GGCACCTTTGTCCTCCTCCTCCTCCTCGTCGTCGTCTTCATCGTCCAAGC
AGGGGTCAAATAGGATGTACGCTGGGAGAATGAGCCCGTCGCTTCGAAGT
GGTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGGGGAATGCACCGACTGGA
CGCAAGGGGAGGAGGAGCAGCTGGAGGCAACGGAGGGCGGGACGAGCATG
GAGCTGACGTCTTTCTCCCTTCCCTCGTCGGCCCCCCCCGTTTCATTGCC
GGTGTTGTCGCCGCTCTCACCGCCGGCCTGCTCTTCGGCTCTTCGTTTAA
TGCTAGCTACTACATCATGGACCATGCCTACATCCCGTCCTCGTCCTACT
CCAAGTACCAAGACCTGGAAATGCTCGATTTTGTCTTCGCGCATTTCAAT
GGCATTTTCCTGACATCTTCCACCTACTTCCTTCTTGCCCTCCTTCTCCA
CCATCTGTCCTCCTGCAAGGAAAAAGCTGCCGCAAGAAGACCTTTCACCC
TCTATCCCGCTACCCTCCTCCCGGCGTTTGCCTCCGGCTTGCTTTGGGCC
GTTGCGATGATTGCTTGGTTTGTGGCGAATCAGAAATTGACCTCTTTATC
TGTGACTTTTCCGATAATCACTTCGACACCGGGGCTGGTGGCCTCGATGT
GGGGGGTGGTGGTGTTCGGGGAGATAAGAGGTAGGAGGAATCTGTTCACC
CTGGCCGGGGCCTTTGGATTAACTGTGACGAGTTGTTTGTTGATTGCTTT
TTCGAAGTGA
back to top
Synonyms
Publications