NO02G02620.2, NO02G02620.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02620.2
Unique NameNO02G02620.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1933
Alignment locationchr2:726992..729302 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:726992..729302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02620.2 vs.
Match: XP_013754624.1 (transmembrane protein 144 [Thecamonas trahens ATCC 50062]; KNC53151.1 transmembrane protein 144 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 243.4 bits (620), Expect = 1.200e-60
Identity = 170/419 (40.57%), Postives = 235/419 (56.09%), Query Frame = 0 
Query:    5 DTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAGLGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKP---------TQSLRATGAPLSSSSSSSSS-SSSKQGSNRMYAGRMSPSLRSGLLVEEEEEEGGMHRLDA-------RGGGAAGGNGGRDEHGA-DVFLPSLVGPPRFIAGVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 406
            D  +G+ A  +A + FGSNF+PVK  +TG+G+ FQ+  C A++ AG+ V A R  P    LA+LGG LWCTGNL SV  I+ +GL L L +WG +N+ +GWAS  FG+ G+  + +ANP LN  G  VAV A LA+  VKP         ++  R +G  L++ +   S  + +  G  R+ A     +L +G+           + +D        R G AAG    RD   A D FL       R   G+ AAL AG +FG +F+   +++DH    S++         +D+VFAHF GIF+TS+ YFL        + C   + A     + P  +LPAFASGL+WA+A I+WFVAN +L SL V FPI+T+ PG+VAS+WGV VF EIRG RN   L  AF LT+ S  LI  S+
Sbjct:    4 DAGLGFGAAAIAVVCFGSNFVPVKKFQTGDGMFFQWVMCAAIFCAGVCVNAVRESPEFHYLAMLGGFLWCTGNLFSVFVIRAVGLGLGLCLWGSTNLIMGWASGKFGLFGLDKEPIANPGLNLVGVLVAVCATLAFAAVKPDLSSDDESRSRESRGSGNVLATVAGRGSGVAPAVGGQKRINAASPETALLAGVADPSASPSAAYYNVDEEALFGSPRPGMAAGDGDERDVIDAMDPFL-------RRALGIAAALLAGTMFGVNFDPPIWLIDHNKGSSNA---------VDYVFAHFTGIFVTSTVYFL--------AYCAYMSNAP---VINPKLVLPAFASGLIWAMADISWFVANTQL-SLVVAFPIVTTGPGIVASLWGVCVFKEIRGTRNFAILGAAFLLTIISVTLITLSR 394
The following BLAST results are available for this feature:
BLAST of NO02G02620.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_013754624.11.200e-6040.57transmembrane protein 144 [Thecamonas trahens ATCC... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02620NO02G02620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02620.2NO02G02620.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02620.2.cds1NO02G02620.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02620.2.cds2NO02G02620.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02620.2.cds3NO02G02620.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02620.2 ID=NO02G02620.2|Name=NO02G02620.2|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp
ACAGCTTACCTTCGCAGACGCTCCCTTTCACCATCCTCGAGACATCAGCC
ACCAGCCCTCTTCTCGGCATCATCGGCACGCCCCATATCAACCTCAACCA
TGGCGGTCAGCGACACCGCCATCGGGTACCTGGCCATGCTCGTAGCGGCC
CTGGGCTTCGGCTCCAATTTTCTGCCCGTCAAAAATTGCGAAACCGGAAA
TGGTATTGCATTCCAGTTCTTCTTCTGTTGGGCCGTCTGGTTGGCTGGAC
TCGGAGTGGGGGCCCATCGTGGCTTCCCTTCCACACCACCCTTAGCTCTC
CTTGGCGGTGCTTTGTGGTGTACAGGCAACCTCCTGTCAGTCCCCGCCAT
TAAGCTCATGGGCTTAAGCCTCTCCCTCCTCATCTGGGGCATCAGTAATA
TGTGCGTGGGCTGGGCCTCGAGTACCTTTGGGATCTTGGGGGTGAAGGCG
CAGCATGTTGCCAACCCTGCCTTAAATTATAGTGGAGCAGCCGTAGCGGT
CCTGGCGCTGTTAGCCTACCTATTTGTTAAACCCACGCAGTCTCTTCGCG
CCACAGGGGCACCTTTGTCCTCCTCCTCCTCCTCGTCGTCGTCTTCATCG
TCCAAGCAGGGGTCAAATAGGATGTACGCTGGGAGAATGAGCCCGTCGCT
TCGAAGTGGTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGGGGAATGCACC
GACTGGACGCAAGGGGAGGAGGAGCAGCTGGAGGCAACGGAGGGCGGGAC
GAGCATGGAGCTGACGTCTTTCTCCCTTCCCTCGTCGGCCCCCCCCGTTT
CATTGCCGGTGTTGTCGCCGCTCTCACCGCCGGCCTGCTCTTCGGCTCTT
CGTTTAATGCTAGCTACTACATCATGGACCATGCCTACATCCCGTCCTCG
TCCTACTCCAAGTACCAAGACCTGGAAATGCTCGATTTTGTCTTCGCGCA
TTTCAATGGCATTTTCCTGACATCTTCCACCTACTTCCTTCTTGCCCTCC
TTCTCCACCATCTGTCCTCCTGCAAGGAAAAAGCTGCCGCAAGAAGACCT
TTCACCCTCTATCCCGCTACCCTCCTCCCGGCGTTTGCCTCCGGCTTGCT
TTGGGCCGTTGCGATGATTGCTTGGTTTGTGGCGAATCAGAAATTGACCT
CTTTATCTGTGACTTTTCCGATAATCACTTCGACACCGGGGCTGGTGGCC
TCGATGTGGGGGGTGGTGGTGTTCGGGGAGATAAGAGGTAGGAGGAATCT
GTTCACCCTGGCCGGGGCCTTTGGATTAACTGTGACGAGTTGTTTGTTGA
TTGCTTTTTCGAAGTGACCAGACGGTGGGTGGACGGGGGAGTACATAAAT
ATGACCATGAATGAACGAGGGAACAAGGTGAATATGTGAAGACCGCTGGA
GGGAGAAGTCACAAGAAAGGAGCGGATGGATGAGTGACAGCTATATATAT
ATATATATGTAAATGTTTTTTAGCACAAAGCAATTTGAAGTAAGAAATAG
ATAGCACCGTCATTTTGAACTCAACCGGAGAAATCTCTGCCCTCTTAAGG
TTCTAAACACATTTTCCCTCTCTTATTCCTTTGGCACCTCTTCTCACCTA
CTCATGCACTAATTTCGTCCTCCTGCACCCGGCATACTAAGGCCTTTCCA
TCACTCGTCTGGACATGCCTTGCCTCCCTTAAATCCTCCATGACTTGCGA
TGCATGCTTCGCCAAAAGATGCGCTCGTGCCCTGACGGTTACGGACGATC
GAGCTGCCAACGTATCGATCGCCCCTCCCCCGCCGCGTCTTCCCCCGCTA
CCTCCTCCTCCTCCACAGCCTGAATGATGTCGTTGTCGTTCTTGTTCTTG
TTGTGGTAGCAATGACGATGATGATGGCGGCGATTCTTTTTCATCATCAT
CATAATCTTCTTCTTCTTCTTCTTCTTCTTCTT
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protein sequence of NO02G02620.2

>NO02G02620.2-protein ID=NO02G02620.2-protein|Name=NO02G02620.2|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MAVSDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAG
LGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISN
MCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKPTQSLR
ATGAPLSSSSSSSSSSSSKQGSNRMYAGRMSPSLRSGLLVEEEEEEGGMH
RLDARGGGAAGGNGGRDEHGADVFLPSLVGPPRFIAGVVAALTAGLLFGS
SFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLAL
LLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLT
SLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLL
IAFSK*
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mRNA from alignment at chr2:726992..729302+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02620.2 ID=NO02G02620.2|Name=NO02G02620.2|organism=Nannochloropsis oceanica|type=mRNA|length=2311bp|location=Sequence derived from alignment at chr2:726992..729302+ (Nannochloropsis oceanica)
ACAGCTTACCTTCGCAGACGCTCCCTTTCACCATCCTCGAGACATCAGCC
ACCAGCCCTCTTCTCGGCATCATCGGCACGCCCCATATCAACCTCAACCA
TGGCGGTCAGCGACACCGCCATCGGGTACCTGGCCATGCTCGTAGCGGCC
CTGGGCTTCGGCTCCAATTTTCTGCCCGTCAAAAAGTAAATATACAAAGT
GGGGATGAGGTAGTAGGCGTTTTGTGTTTGGCTGGCACCCTCAGAACTGC
CTTCAGCCGGCTGAACACTGGAAATATCATCACAGCGCTAATCCAAGGAG
ACGAAGCAGGGGCGGCACAATTCAAGCCCGCCCTTTCCCTCTCTCCTCTT
CCATGACCATACCCCCACCCTAACCTTCACCCCTTCCTCACACAGTTGCG
AAACCGGAAATGGTATTGCATTCCAGTTCTTCTTCTGTTGGGCCGTCTGG
TTGGCTGGACTCGGAGTGGGGGCCCATCGTGGCTTCCCTTCCACACCACC
CTTAGCTCTCCTTGGCGGTGCTTTGTGGTGTACAGGCAACCTCCTGTCAG
TCCCCGCCATTAAGCTCATGGGCTTAAGCCTCTCCCTCCTCATCTGGGGC
ATCAGTAATATGTGCGTGGGCTGGGCCTCGAGTACCTTTGGGATCTTGGG
GGTGAAGGCGCAGCATGTTGCCAACCCTGCCTTAAATTATAGTGGAGCAG
CCGTAGCGGTCCTGGCGCTGTTAGCCTACCTATTTGTTAAACCCACGCAG
TCTCTTCGCGCCACAGGGGCACCTTTGTCCTCCTCCTCCTCCTCGTCGTC
GTCTTCATCGTCCAAGCAGGGGTCAAATAGGATGTACGCTGGGAGAATGA
GCCCGTCGCTTCGAAGTGGTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGG
GGAATGCACCGACTGGACGCAAGGGGAGGAGGAGCAGCTGGAGGCAACGG
AGGGCGGGACGAGCATGGAGGTAGGGATGTAAGGAAGGACATATTGGGCT
TCCCTTCTGTTGTGCTTTCTCTTACCCTCCCCATCCCCTTCCATCTCCTT
GCTTTTCCTTTTTGCCTTCCCACCGAGCTACTGATCACTGACGTATTACC
TAATACCATTTCCGTCTCTTTCGTCGCGCCCAATACAGCTGACGTCTTTC
TCCCTTCCCTCGTCGGCCCCCCCCGTTTCATTGCCGGTGTTGTCGCCGCT
CTCACCGCCGGCCTGCTCTTCGGCTCTTCGTTTAATGCTAGCTACTACAT
CATGGACCATGCCTACATCCCGTCCTCGTCCTACTCCAAGTACCAAGACC
TGGAAATGCTCGATTTTGTCTTCGCGCATTTCAATGGCATTTTCCTGACA
TCTTCCACCTACTTCCTTCTTGCCCTCCTTCTCCACCATCTGTCCTCCTG
CAAGGAAAAAGCTGCCGCAAGAAGACCTTTCACCCTCTATCCCGCTACCC
TCCTCCCGGCGTTTGCCTCCGGCTTGCTTTGGGCCGTTGCGATGATTGCT
TGGTTTGTGGCGAATCAGAAATTGACCTCTTTATCTGTGACTTTTCCGAT
AATCACTTCGACACCGGGGCTGGTGGCCTCGATGTGGGGGGTGGTGGTGT
TCGGGGAGATAAGAGGTAGGAGGAATCTGTTCACCCTGGCCGGGGCCTTT
GGATTAACTGTGACGAGTTGTTTGTTGATTGCTTTTTCGAAGTGACCAGA
CGGTGGGTGGACGGGGGAGTACATAAATATGACCATGAATGAACGAGGGA
ACAAGGTGAATATGTGAAGACCGCTGGAGGGAGAAGTCACAAGAAAGGAG
CGGATGGATGAGTGACAGCTATATATATATATATATGTAAATGTTTTTTA
GCACAAAGCAATTTGAAGTAAGAAATAGATAGCACCGTCATTTTGAACTC
AACCGGAGAAATCTCTGCCCTCTTAAGGTTCTAAACACATTTTCCCTCTC
TTATTCCTTTGGCACCTCTTCTCACCTACTCATGCACTAATTTCGTCCTC
CTGCACCCGGCATACTAAGGCCTTTCCATCACTCGTCTGGACATGCCTTG
CCTCCCTTAAATCCTCCATGACTTGCGATGCATGCTTCGCCAAAAGATGC
GCTCGTGCCCTGACGGTTACGGACGATCGAGCTGCCAACGTATCGATCGC
CCCTCCCCCGCCGCGTCTTCCCCCGCTACCTCCTCCTCCTCCACAGCCTG
AATGATGTCGTTGTCGTTCTTGTTCTTGTTGTGGTAGCAATGACGATGAT
GATGGCGGCGATTCTTTTTCATCATCATCATAATCTTCTTCTTCTTCTTC
TTCTTCTTCTT
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Coding sequence (CDS) from alignment at chr2:726992..729302+

>NO02G02620.2 ID=NO02G02620.2|Name=NO02G02620.2|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at chr2:726992..729302+ (Nannochloropsis oceanica)
ATGGCGGTCAGCGACACCGCCATCGGGTACCTGGCCATGCTCGTAGCGGC
CCTGGGCTTCGGCTCCAATTTTCTGCCCGTCAAAAATTGCGAAACCGGAA
ATGGTATTGCATTCCAGTTCTTCTTCTGTTGGGCCGTCTGGTTGGCTGGA
CTCGGAGTGGGGGCCCATCGTGGCTTCCCTTCCACACCACCCTTAGCTCT
CCTTGGCGGTGCTTTGTGGTGTACAGGCAACCTCCTGTCAGTCCCCGCCA
TTAAGCTCATGGGCTTAAGCCTCTCCCTCCTCATCTGGGGCATCAGTAAT
ATGTGCGTGGGCTGGGCCTCGAGTACCTTTGGGATCTTGGGGGTGAAGGC
GCAGCATGTTGCCAACCCTGCCTTAAATTATAGTGGAGCAGCCGTAGCGG
TCCTGGCGCTGTTAGCCTACCTATTTGTTAAACCCACGCAGTCTCTTCGC
GCCACAGGGGCACCTTTGTCCTCCTCCTCCTCCTCGTCGTCGTCTTCATC
GTCCAAGCAGGGGTCAAATAGGATGTACGCTGGGAGAATGAGCCCGTCGC
TTCGAAGTGGTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGGGGAATGCAC
CGACTGGACGCAAGGGGAGGAGGAGCAGCTGGAGGCAACGGAGGGCGGGA
CGAGCATGGAGCTGACGTCTTTCTCCCTTCCCTCGTCGGCCCCCCCCGTT
TCATTGCCGGTGTTGTCGCCGCTCTCACCGCCGGCCTGCTCTTCGGCTCT
TCGTTTAATGCTAGCTACTACATCATGGACCATGCCTACATCCCGTCCTC
GTCCTACTCCAAGTACCAAGACCTGGAAATGCTCGATTTTGTCTTCGCGC
ATTTCAATGGCATTTTCCTGACATCTTCCACCTACTTCCTTCTTGCCCTC
CTTCTCCACCATCTGTCCTCCTGCAAGGAAAAAGCTGCCGCAAGAAGACC
TTTCACCCTCTATCCCGCTACCCTCCTCCCGGCGTTTGCCTCCGGCTTGC
TTTGGGCCGTTGCGATGATTGCTTGGTTTGTGGCGAATCAGAAATTGACC
TCTTTATCTGTGACTTTTCCGATAATCACTTCGACACCGGGGCTGGTGGC
CTCGATGTGGGGGGTGGTGGTGTTCGGGGAGATAAGAGGTAGGAGGAATC
TGTTCACCCTGGCCGGGGCCTTTGGATTAACTGTGACGAGTTGTTTGTTG
ATTGCTTTTTCGAAGTGA
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Synonyms
Publications