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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:726992..729302 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02620.3 vs.
Match: XP_013754624.1 (transmembrane protein 144 [Thecamonas trahens ATCC 50062]; KNC53151.1 transmembrane protein 144 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 209.9 bits (533), Expect = 1.700e-50 Identity = 165/457 (36.11%), Postives = 231/457 (50.55%), Query Frame = 0
Query: 5 DTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAGLGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISNMCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKPTQSLRATGAPLSSSSSSSSSSSSKQGSNRMYAGRMSPSLRSGLLVEEEEEEGGMHRLDARGGGAAGGNGGRDEHGGRDVRKDILGFPSVVLSLTLPIPFHLLAFPFCLPTELLITDVLPNTISVSFVAPNTADVFLPSLVGPPRFIAGVVAALTAGLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSSTYFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFVANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLTVTSCLLIAFSK 462
D +G+ A +A + FGSNF+PVK +TG+G+ FQ+ C A++ AG+ V A R P LA+LGG LWCTGNL SV I+ +GL L L +WG +N+ +GWAS FG+ G+ + +ANP LN G L A A L+ ++ SS + +R G SG ++ + RG G A GG+ +L + P A+ + + E L P + + D P L R G+ AAL AG +FG +F+ +++DH S++ +D+VFAHF GIF+TS+ YFL + C + A + P +LPAFASGL+WA+A I+WFVAN +L SL V FPI+T+ PG+VAS+WGV VF EIRG RN L AF LT+ S LI S+
Sbjct: 4 DAGLGFGAAAIAVVCFGSNFVPVKKFQTGDGMFFQWVMCAAIFCAGVCVNAVRESPEFHYLAMLGGFLWCTGNLFSVFVIRAVGLGLGLCLWGSTNLIMGWASGKFGLFGLDKEPIANPGLNLVG------------------VLVAVCATLAFAAVKPDLSSDDESRSRESRG-------SGNVLAT---------VAGRGSGVAPAVGGQKRINAASPETALLA------GVADPSASPSAAY-YNVDEEALFGSPRPGMAAGDGDERDVIDAMDPFL----RRALGIAAALLAGTMFGVNFDPPIWLIDHNKGSSNA---------VDYVFAHFTGIFVTSTVYFL--------AYCAYMSNAP---VINPKLVLPAFASGLIWAMADISWFVANTQL-SLVVAFPIVTTGPGIVASLWGVCVFKEIRGTRNFAILGAAFLLTIISVTLITLSR 394
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02620.3 ID=NO02G02620.3|Name=NO02G02620.3|organism=Nannochloropsis oceanica|type=mRNA|length=2101bp
ACAGCTTACCTTCGCAGACGCTCCCTTTCACCATCCTCGAGACATCAGCC
ACCAGCCCTCTTCTCGGCATCATCGGCACGCCCCATATCAACCTCAACCA
TGGCGGTCAGCGACACCGCCATCGGGTACCTGGCCATGCTCGTAGCGGCC
CTGGGCTTCGGCTCCAATTTTCTGCCCGTCAAAAATTGCGAAACCGGAAA
TGGTATTGCATTCCAGTTCTTCTTCTGTTGGGCCGTCTGGTTGGCTGGAC
TCGGAGTGGGGGCCCATCGTGGCTTCCCTTCCACACCACCCTTAGCTCTC
CTTGGCGGTGCTTTGTGGTGTACAGGCAACCTCCTGTCAGTCCCCGCCAT
TAAGCTCATGGGCTTAAGCCTCTCCCTCCTCATCTGGGGCATCAGTAATA
TGTGCGTGGGCTGGGCCTCGAGTACCTTTGGGATCTTGGGGGTGAAGGCG
CAGCATGTTGCCAACCCTGCCTTAAATTATAGTGGAGCAGCCGTAGCGGT
CCTGGCGCTGTTAGCCTACCTATTTGTTAAACCCACGCAGTCTCTTCGCG
CCACAGGGGCACCTTTGTCCTCCTCCTCCTCCTCGTCGTCGTCTTCATCG
TCCAAGCAGGGGTCAAATAGGATGTACGCTGGGAGAATGAGCCCGTCGCT
TCGAAGTGGTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGGGGAATGCACC
GACTGGACGCAAGGGGAGGAGGAGCAGCTGGAGGCAACGGAGGGCGGGAC
GAGCATGGAGGTAGGGATGTAAGGAAGGACATATTGGGCTTCCCTTCTGT
TGTGCTTTCTCTTACCCTCCCCATCCCCTTCCATCTCCTTGCTTTTCCTT
TTTGCCTTCCCACCGAGCTACTGATCACTGACGTATTACCTAATACCATT
TCCGTCTCTTTCGTCGCGCCCAATACAGCTGACGTCTTTCTCCCTTCCCT
CGTCGGCCCCCCCCGTTTCATTGCCGGTGTTGTCGCCGCTCTCACCGCCG
GCCTGCTCTTCGGCTCTTCGTTTAATGCTAGCTACTACATCATGGACCAT
GCCTACATCCCGTCCTCGTCCTACTCCAAGTACCAAGACCTGGAAATGCT
CGATTTTGTCTTCGCGCATTTCAATGGCATTTTCCTGACATCTTCCACCT
ACTTCCTTCTTGCCCTCCTTCTCCACCATCTGTCCTCCTGCAAGGAAAAA
GCTGCCGCAAGAAGACCTTTCACCCTCTATCCCGCTACCCTCCTCCCGGC
GTTTGCCTCCGGCTTGCTTTGGGCCGTTGCGATGATTGCTTGGTTTGTGG
CGAATCAGAAATTGACCTCTTTATCTGTGACTTTTCCGATAATCACTTCG
ACACCGGGGCTGGTGGCCTCGATGTGGGGGGTGGTGGTGTTCGGGGAGAT
AAGAGGTAGGAGGAATCTGTTCACCCTGGCCGGGGCCTTTGGATTAACTG
TGACGAGTTGTTTGTTGATTGCTTTTTCGAAGTGACCAGACGGTGGGTGG
ACGGGGGAGTACATAAATATGACCATGAATGAACGAGGGAACAAGGTGAA
TATGTGAAGACCGCTGGAGGGAGAAGTCACAAGAAAGGAGCGGATGGATG
AGTGACAGCTATATATATATATATATGTAAATGTTTTTTAGCACAAAGCA
ATTTGAAGTAAGAAATAGATAGCACCGTCATTTTGAACTCAACCGGAGAA
ATCTCTGCCCTCTTAAGGTTCTAAACACATTTTCCCTCTCTTATTCCTTT
GGCACCTCTTCTCACCTACTCATGCACTAATTTCGTCCTCCTGCACCCGG
CATACTAAGGCCTTTCCATCACTCGTCTGGACATGCCTTGCCTCCCTTAA
ATCCTCCATGACTTGCGATGCATGCTTCGCCAAAAGATGCGCTCGTGCCC
TGACGGTTACGGACGATCGAGCTGCCAACGTATCGATCGCCCCTCCCCCG
CCGCGTCTTCCCCCGCTACCTCCTCCTCCTCCACAGCCTGAATGATGTCG
TTGTCGTTCTTGTTCTTGTTGTGGTAGCAATGACGATGATGATGGCGGCG
ATTCTTTTTCATCATCATCATAATCTTCTTCTTCTTCTTCTTCTTCTTCT
T back to topprotein sequence of NO02G02620.3 >NO02G02620.3-protein ID=NO02G02620.3-protein|Name=NO02G02620.3|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MAVSDTAIGYLAMLVAALGFGSNFLPVKNCETGNGIAFQFFFCWAVWLAG
LGVGAHRGFPSTPPLALLGGALWCTGNLLSVPAIKLMGLSLSLLIWGISN
MCVGWASSTFGILGVKAQHVANPALNYSGAAVAVLALLAYLFVKPTQSLR
ATGAPLSSSSSSSSSSSSKQGSNRMYAGRMSPSLRSGLLVEEEEEEGGMH
RLDARGGGAAGGNGGRDEHGGRDVRKDILGFPSVVLSLTLPIPFHLLAFP
FCLPTELLITDVLPNTISVSFVAPNTADVFLPSLVGPPRFIAGVVAALTA
GLLFGSSFNASYYIMDHAYIPSSSYSKYQDLEMLDFVFAHFNGIFLTSST
YFLLALLLHHLSSCKEKAAARRPFTLYPATLLPAFASGLLWAVAMIAWFV
ANQKLTSLSVTFPIITSTPGLVASMWGVVVFGEIRGRRNLFTLAGAFGLT
VTSCLLIAFSK* back to topmRNA from alignment at chr2:726992..729302+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02620.3 ID=NO02G02620.3|Name=NO02G02620.3|organism=Nannochloropsis oceanica|type=mRNA|length=2311bp|location=Sequence derived from alignment at chr2:726992..729302+ (Nannochloropsis oceanica)
ACAGCTTACCTTCGCAGACGCTCCCTTTCACCATCCTCGAGACATCAGCC
ACCAGCCCTCTTCTCGGCATCATCGGCACGCCCCATATCAACCTCAACCA
TGGCGGTCAGCGACACCGCCATCGGGTACCTGGCCATGCTCGTAGCGGCC
CTGGGCTTCGGCTCCAATTTTCTGCCCGTCAAAAAGTAAATATACAAAGT
GGGGATGAGGTAGTAGGCGTTTTGTGTTTGGCTGGCACCCTCAGAACTGC
CTTCAGCCGGCTGAACACTGGAAATATCATCACAGCGCTAATCCAAGGAG
ACGAAGCAGGGGCGGCACAATTCAAGCCCGCCCTTTCCCTCTCTCCTCTT
CCATGACCATACCCCCACCCTAACCTTCACCCCTTCCTCACACAGTTGCG
AAACCGGAAATGGTATTGCATTCCAGTTCTTCTTCTGTTGGGCCGTCTGG
TTGGCTGGACTCGGAGTGGGGGCCCATCGTGGCTTCCCTTCCACACCACC
CTTAGCTCTCCTTGGCGGTGCTTTGTGGTGTACAGGCAACCTCCTGTCAG
TCCCCGCCATTAAGCTCATGGGCTTAAGCCTCTCCCTCCTCATCTGGGGC
ATCAGTAATATGTGCGTGGGCTGGGCCTCGAGTACCTTTGGGATCTTGGG
GGTGAAGGCGCAGCATGTTGCCAACCCTGCCTTAAATTATAGTGGAGCAG
CCGTAGCGGTCCTGGCGCTGTTAGCCTACCTATTTGTTAAACCCACGCAG
TCTCTTCGCGCCACAGGGGCACCTTTGTCCTCCTCCTCCTCCTCGTCGTC
GTCTTCATCGTCCAAGCAGGGGTCAAATAGGATGTACGCTGGGAGAATGA
GCCCGTCGCTTCGAAGTGGTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGG
GGAATGCACCGACTGGACGCAAGGGGAGGAGGAGCAGCTGGAGGCAACGG
AGGGCGGGACGAGCATGGAGGTAGGGATGTAAGGAAGGACATATTGGGCT
TCCCTTCTGTTGTGCTTTCTCTTACCCTCCCCATCCCCTTCCATCTCCTT
GCTTTTCCTTTTTGCCTTCCCACCGAGCTACTGATCACTGACGTATTACC
TAATACCATTTCCGTCTCTTTCGTCGCGCCCAATACAGCTGACGTCTTTC
TCCCTTCCCTCGTCGGCCCCCCCCGTTTCATTGCCGGTGTTGTCGCCGCT
CTCACCGCCGGCCTGCTCTTCGGCTCTTCGTTTAATGCTAGCTACTACAT
CATGGACCATGCCTACATCCCGTCCTCGTCCTACTCCAAGTACCAAGACC
TGGAAATGCTCGATTTTGTCTTCGCGCATTTCAATGGCATTTTCCTGACA
TCTTCCACCTACTTCCTTCTTGCCCTCCTTCTCCACCATCTGTCCTCCTG
CAAGGAAAAAGCTGCCGCAAGAAGACCTTTCACCCTCTATCCCGCTACCC
TCCTCCCGGCGTTTGCCTCCGGCTTGCTTTGGGCCGTTGCGATGATTGCT
TGGTTTGTGGCGAATCAGAAATTGACCTCTTTATCTGTGACTTTTCCGAT
AATCACTTCGACACCGGGGCTGGTGGCCTCGATGTGGGGGGTGGTGGTGT
TCGGGGAGATAAGAGGTAGGAGGAATCTGTTCACCCTGGCCGGGGCCTTT
GGATTAACTGTGACGAGTTGTTTGTTGATTGCTTTTTCGAAGTGACCAGA
CGGTGGGTGGACGGGGGAGTACATAAATATGACCATGAATGAACGAGGGA
ACAAGGTGAATATGTGAAGACCGCTGGAGGGAGAAGTCACAAGAAAGGAG
CGGATGGATGAGTGACAGCTATATATATATATATATGTAAATGTTTTTTA
GCACAAAGCAATTTGAAGTAAGAAATAGATAGCACCGTCATTTTGAACTC
AACCGGAGAAATCTCTGCCCTCTTAAGGTTCTAAACACATTTTCCCTCTC
TTATTCCTTTGGCACCTCTTCTCACCTACTCATGCACTAATTTCGTCCTC
CTGCACCCGGCATACTAAGGCCTTTCCATCACTCGTCTGGACATGCCTTG
CCTCCCTTAAATCCTCCATGACTTGCGATGCATGCTTCGCCAAAAGATGC
GCTCGTGCCCTGACGGTTACGGACGATCGAGCTGCCAACGTATCGATCGC
CCCTCCCCCGCCGCGTCTTCCCCCGCTACCTCCTCCTCCTCCACAGCCTG
AATGATGTCGTTGTCGTTCTTGTTCTTGTTGTGGTAGCAATGACGATGAT
GATGGCGGCGATTCTTTTTCATCATCATCATAATCTTCTTCTTCTTCTTC
TTCTTCTTCTT back to topCoding sequence (CDS) from alignment at chr2:726992..729302+ >NO02G02620.3 ID=NO02G02620.3|Name=NO02G02620.3|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at chr2:726992..729302+ (Nannochloropsis oceanica)
ATGGCGGTCAGCGACACCGCCATCGGGTACCTGGCCATGCTCGTAGCGGC
CCTGGGCTTCGGCTCCAATTTTCTGCCCGTCAAAAATTGCGAAACCGGAA
ATGGTATTGCATTCCAGTTCTTCTTCTGTTGGGCCGTCTGGTTGGCTGGA
CTCGGAGTGGGGGCCCATCGTGGCTTCCCTTCCACACCACCCTTAGCTCT
CCTTGGCGGTGCTTTGTGGTGTACAGGCAACCTCCTGTCAGTCCCCGCCA
TTAAGCTCATGGGCTTAAGCCTCTCCCTCCTCATCTGGGGCATCAGTAAT
ATGTGCGTGGGCTGGGCCTCGAGTACCTTTGGGATCTTGGGGGTGAAGGC
GCAGCATGTTGCCAACCCTGCCTTAAATTATAGTGGAGCAGCCGTAGCGG
TCCTGGCGCTGTTAGCCTACCTATTTGTTAAACCCACGCAGTCTCTTCGC
GCCACAGGGGCACCTTTGTCCTCCTCCTCCTCCTCGTCGTCGTCTTCATC
GTCCAAGCAGGGGTCAAATAGGATGTACGCTGGGAGAATGAGCCCGTCGC
TTCGAAGTGGTCTGCTGGTGGAGGAGGAAGAGGAGGAGGGGGGAATGCAC
CGACTGGACGCAAGGGGAGGAGGAGCAGCTGGAGGCAACGGAGGGCGGGA
CGAGCATGGAGGTAGGGATGTAAGGAAGGACATATTGGGCTTCCCTTCTG
TTGTGCTTTCTCTTACCCTCCCCATCCCCTTCCATCTCCTTGCTTTTCCT
TTTTGCCTTCCCACCGAGCTACTGATCACTGACGTATTACCTAATACCAT
TTCCGTCTCTTTCGTCGCGCCCAATACAGCTGACGTCTTTCTCCCTTCCC
TCGTCGGCCCCCCCCGTTTCATTGCCGGTGTTGTCGCCGCTCTCACCGCC
GGCCTGCTCTTCGGCTCTTCGTTTAATGCTAGCTACTACATCATGGACCA
TGCCTACATCCCGTCCTCGTCCTACTCCAAGTACCAAGACCTGGAAATGC
TCGATTTTGTCTTCGCGCATTTCAATGGCATTTTCCTGACATCTTCCACC
TACTTCCTTCTTGCCCTCCTTCTCCACCATCTGTCCTCCTGCAAGGAAAA
AGCTGCCGCAAGAAGACCTTTCACCCTCTATCCCGCTACCCTCCTCCCGG
CGTTTGCCTCCGGCTTGCTTTGGGCCGTTGCGATGATTGCTTGGTTTGTG
GCGAATCAGAAATTGACCTCTTTATCTGTGACTTTTCCGATAATCACTTC
GACACCGGGGCTGGTGGCCTCGATGTGGGGGGTGGTGGTGTTCGGGGAGA
TAAGAGGTAGGAGGAATCTGTTCACCCTGGCCGGGGCCTTTGGATTAACT
GTGACGAGTTGTTTGTTGATTGCTTTTTCGAAGTGA back to top
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