NO02G00140, NO02G00140 (gene) Nannochloropsis oceanica

Overview
NameNO02G00140
Unique NameNO02G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3726
Alignment locationchr2:53252..56977 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:53252..56977 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
Homology
The following BLAST results are available for this feature:
BLAST of NO02G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR068ncniR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610045gene_10175Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00140.1NO02G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G00140.2NO02G00140.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G00140.3NO02G00140.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00140.1NO02G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G00140.2NO02G00140.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G00140.3NO02G00140.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00140 ID=NO02G00140|Name=NO02G00140|organism=Nannochloropsis oceanica|type=gene|length=3726bp
CTCATATATATAGAAGACGCAGCTGAATTTGAAAATCGCCGACTCTCCGA
CCTCCGCTTCGGCCTCATAACGGCTCCAAACCTGAAGGCGTAGAGGTAGG
CCCGGCATGCATCCCTTTCTCTCTTCCTCCCCGCTATGGCACAGCGCATA
GTTAGCTATCCTACCCGCGACGCTGCAACGCTCACGACACCACACAAGTA
CAGGTGTAGCACGGAAACATGAGCCGTGTGATGAAAGATGATGCCGATTA
CCAAGGGAGCATTTGATTGGCTATCCACAAGCAAGTATTTCGTTATCGGT
CAAATGGCTTGATCAAAGCGAGATCTGTACGTTGTTCTTGTCTCACTCCT
TCGATAAACGTGTTTTGACCCGATCTGGCACGCGGACGGCATCGACGCGT
GTCGTGCTGCTGACTTCCACACTGTAGAAAGAATCCCGCCTAGTGCGCGA
AGCCTCAGGCAATGTCCAAAGAATGTATTCTATGGTGCTGGGAGGCGCGA
TTCAGGACGACAGTGGAATAGTAAAGCGCAATGGCTGGGGTCTGTGCGTG
ATTTGCAGTAAACTTACGGCAACATAGTTGACATCACTAATAACTACTAT
CCCCCCACGATCATATCGCATGTCCCATAACATAGCAGCTAGGAGGACGC
AAGAGACGGTACGGGCATCATGCTGAACACTTCTGAGCTGCGGCCGCGAC
GGAAATTGGGGGAGGGAGCGCACGGGGGGGGGAAGAATGTCTTTGAGATG
GCACTGTCTGGGATGGACCAGATGATGATCGGGTGGATGATGGTGGCGGT
CGTTTTCAGCCAGCTCGTCCTTGACGAGGTACTAAGGCGGGCAGAGGCCT
CAGTCGGGACGAATGCGCGTGCATGCCTGCGAGAGGTGTATAAGGAATTG
TCCACGGTCAGTACAGTACTACTTATGCCTGCCCGTCCGTCTTCCTCCCA
CTTCCTCTCCCCCGCCTTTGCTTCCTCCCCTTTCCTCCTCATCCAAGCCC
TTCCTCCACACTCTATCTTCACTACTTTTGCCAATCTCCTACGCCATATG
ATGATGCACCATGCCAGGAATGCCACGGAAGTTGTCGAGGCCGGATAAGG
GTCAGCGCGCCACGACAATAGCCCCTTCCATCCATTCGTGGATTTCTCTC
TCAATCACTTACTAAACTCCTCTCTCCCGCCCTCTCTGCCTACCCCTCCC
CCTCCCTCCCTTTCCTCTGCATATCCACAGTTGGGTCTGATCTCTTTCAC
GCTATTTATGGTCCAGAGCTTCGAGACTCAGGTGAACGAGGCCACGCTAC
TGGCGTTTGAGgtacggaaataataacggcacctcatgccacctttctcc
caaatgcatcaccgccatctctcgtcaccacatccacagTACTCCCACAT
CTTCGTCTTCTCATTTGCCATCGTCTACGTGATTCAGTCTGCGGTTGTTA
TCGCCTGTATCAACCCCATCAAGCGACGCCTCATCCGCCTGCACGCGTAC
GGAGATGCCGTAGTCGCCGCCGTCGCTGCCACCGTCCCCCAACCCTCTCA
ATATCCTCCCACTGGTGATCGGAATAGTGATCTCTCCGTGCTAGACCGGC
TATATGCCTTAATTTGTTGTGCATTTGGCGGTGCATCGGGGGCGTCGCCG
ACACTGAGCCGCAGCAAGGAGGCCGTACGCGCCTTCGACGGGTTCCGGGC
TTTTCGTCGGAAGTTTCTGAGGAAACATAGCTTGCCCGCATGTTTTCTAT
TCGACCACTACCTTATCGAAGTTTATGACCGCTGGGTAATATTGAAGCTG
GATATTGCTACCTGGTGCTGGGCGCTTATGTGCGTCATATTCGGTATTCA
CGCCCTAGTGGCGCGCTTTCCCCACTTTGCAGCCTTCTGCCTCAACCGCT
GGACATTCTTGTGCTATGGCTGGCTCCTTCTTCTCGCGGATTACACACTC
TTCATCCTTGTCCATAGGgtgcgtggggatggggtaggctgctctgcttg
catgacaggcaaatctgaactcacctcacccaccaccatactctaccgat
cccatccatcagGTGCACGAACGTGTCCTCAAACAGGTCCGATCAAGTAA
CAGCGACAGTCTCAGCGTCAGCACCACCTCTTCCACGTGTTCCATAGCCA
ACGGGAGCATGCGCTCGAGCTCTGCCGCGAGCGTCGATGCGGCTGGTGGT
AGCGGTGGGTCAGTTGGGCAGATGGGAGAGGAGGATGTCATGGAGGAGCT
GCGACAGCGGCGGGCGGCGCTGCATGCCCAGTATTTCCGTGAACAGAAAG
AAAAAGATGGGGCTCATGAGATAATAGACGCCGGAATCGGAGAGAACGGA
AATGAGCATGCGGATGTGGGTGTCCTGCGGCACCCTCCCCGGCACTGGCA
CTGGGGCGTCGCCAACCTGCTGAATGCTGGTGGCATCACTAACAACACCC
CTACGAACAACGTCGTTGCCGACGGGGCCCTAGGATTTACCCTGTGGGAA
AGTTTTGCTTTTAACTACGGCACCGAGGCACTCAGCATAATTAGGTGCCT
GTATCTGGCCGCGTGGCCATGCACATATACTGTGCCCGCTTTCGGGGAGT
GGTTCTCCACCGGCTGGGCGCTCTTATACATCCTCGTTATTCCCATCCCG
gtatgtctttgtgtttttggtcgcactccaatcttttccaagcagtgata
ggaatgccaatgccacgcctattatcttaatttgtctcttctaacatcaa
atacgtgtaaataatctgcagGCCATCATCACCGGTACCGTCCTCATTCC
GCGTATGGCCACGCGATTCCTCCTTGTGGGATCTCTTTCCGTCCTAAATC
TCGAGGCGTTCGATGCGGTCGTCGAGgtgagaccatagacttatcttgcg
tgtatgtttgtgagcgtgagtgtaccggtacttaaagacgaagtccggtt
ggtggtttgagtgtactcttgatttttttccgcgtcttgctgcccagttc
gttcaattttctcccctatcccacttaattacgacacgaaaagTACATGG
AGGATGCCGAGGCCGCGCTTAAAGACATCGCGCATCTCCTGCAACGCCTC
ACCAACATAAATGACACGGGAGCTAGCAGCGTGGAGCAGCTCTTCGCTTC
TCTGGCCCAGCACCATCGTCACCATCGCCTTTCTCCCTCCGATCTCACCC
ATGCCACCAACGCACGCGTCGCCCGTGCCCTTTCCCAGACCAACCCCCCC
GAAAGCAGTAGCTTCATCACATATGCCGAGCTCCGCGACTTCTTACGGCA
CCACGGAGTGCACCTCCCTCTTCGCCGCTTCCGCGCGCTGGTCCGCTTCA
TCGACTTGGACCTAGGTGGCCACGTGAATTTGGAGGATTTCAGAGCCCTA
CTCCGGGCCGATCACCTCTTTGAAGCCCAGAGGCCTCATCAGTGCCCGTC
GTCGGCTCGTGTTGCACGACTCCTCAGCCAGGATACCCTGAACTATCATC
CCCAAAATAGTTTGCATGGGCAGGACGCGGTGTTTGCAGACGTGGGGCAA
TTGCTTCGGCGAGGGAGCAGAGCCTTTTTAAGTCGAGTTACGCGGTCTAT
GGAACAAAGGGATAGTAGTGATCGAGCAGGGGGTGTAACTGCGGCTTCGG
GGGTGTAATTTAATCGGTTGTTGTACATAATTAATGCTATAAAGTAGAAA
AATCTCGACCTTTTCAACGCGTCTAC
back to top

protein sequence of NO02G00140.1

>NO02G00140.1-protein ID=NO02G00140.1-protein|Name=NO02G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp
MLNTSELRPRRKLGEGAHGGGKNVFEMALSGMDQMMIGWMMVAVVFSQLV
LDEVLRRAEASVGTNARACLREVYKELSTLGLISFTLFMVQSFETQVNEA
TLLAFEYSHIFVFSFAIVYVIQSAVVIACINPIKRRLIRLHAYGDAVVAA
VAATVPQPSQYPPTGDRNSDLSVLDRLYALICCAFGGASGASPTLSRSKE
AVRAFDGFRAFRRKFLRKHSLPACFLFDHYLIEVYDRWVILKLDIATWCW
ALMCVIFGIHALVARFPHFAAFCLNRWTFLCYGWLLLLADYTLFILVHRV
HERVLKQVRSSNSDSLSVSTTSSTCSIANGSMRSSSAASVDAAGGSGGSV
GQMGEEDVMEELRQRRAALHAQYFREQKEKDGAHEIIDAGIGENGNEHAD
VGVLRHPPRHWHWGVANLLNAGGITNNTPTNNVVADGALGFTLWESFAFN
YGTEALSIIRCLYLAAWPCTYTVPAFGEWFSTGWALLYILVIPIPAIITG
TVLIPRMATRFLLVGSLSVLNLEAFDAVVEYMEDAEAALKDIAHLLQRLT
NINDTGASSVEQLFASLAQHHRHHRLSPSDLTHATNARVARALSQTNPPE
SSSFITYAELRDFLRHHGVHLPLRRFRALVRFIDLDLGGHVNLEDFRALL
RADHLFEAQRPHQCPSSARVARLLSQDTLNYHPQNSLHGQDAVFADVGQL
LRRGSRAFLSRVTRSMEQRDSSDRAGGVTAASGV*
back to top

protein sequence of NO02G00140.2

>NO02G00140.2-protein ID=NO02G00140.2-protein|Name=NO02G00140.2|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp
MVQSFETQVNEATLLAFEYSHIFVFSFAIVYVIQSAVVIACINPIKRRLI
RLHAYGDAVVAAVAATVPQPSQYPPTGDRNSDLSVLDRLYALICCAFGGA
SGASPTLSRSKEAVRAFDGFRAFRRKFLRKHSLPACFLFDHYLIEVYDRW
VILKLDIATWCWALMCVIFGIHALVARFPHFAAFCLNRWTFLCYGWLLLL
ADYTLFILVHRVHERVLKQVRSSNSDSLSVSTTSSTCSIANGSMRSSSAA
SVDAAGGSGGSVGQMGEEDVMEELRQRRAALHAQYFREQKEKDGAHEIID
AGIGENGNEHADVGVLRHPPRHWHWGVANLLNAGGITNNTPTNNVVADGA
LGFTLWESFAFNYGTEALSIIRCLYLAAWPCTYTVPAFGEWFSTGWALLY
ILVIPIPAIITGTVLIPRMATRFLLVGSLSVLNLEAFDAVVEYMEDAEAA
LKDIAHLLQRLTNINDTGASSVEQLFASLAQHHRHHRLSPSDLTHATNAR
VARALSQTNPPESSSFITYAELRDFLRHHGVHLPLRRFRALVRFIDLDLG
GHVNLEDFRALLRADHLFEAQRPHQCPSSARVARLLSQDTLNYHPQNSLH
GQDAVFADVGQLLRRGSRAFLSRVTRSMEQRDSSDRAGGVTAASGV*
back to top

protein sequence of NO02G00140.3

>NO02G00140.3-protein ID=NO02G00140.3-protein|Name=NO02G00140.3|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp
MLNTSELRPRRKLGEGAHGGGKNVFEMALSGMDQMMIGWMMVAVVFSQLV
LDEVLRRAEASVGTNARACLREVYKELSTLGLISFTLFMVQSFETQVNEA
TLLAFEYSHIFVFSFAIVYVIQSAVVIACINPIKRRLIRLHAYGDAVVAA
VAATVPQPSQYPPTGDRNSDLSVLDRLYALICCAFGGASGASPTLSRSKE
AVRAFDGFRAFRRKFLRKHSLPACFLFDHYLIEVYDRWVILKLDIATWCW
ALMCVIFGIHALVARFPHFAAFCLNRWTFLCYGWLLLLADYTLFILVHRV
HERVLKQVRSSNSDSLSVSTTSSTCSIANGSMRSSSAASVDAAGGSGGSV
GQMGEEDVMEELRQRRAALHAQYFREQKEKDGAHEIIDAGIGENGNEHAD
VGVLRHPPRHWHWGVANLLNAGGITNNTPTNNVVADGALGFTLWESFAFN
YGTEALSIIRCLYLAAWPCTYTVPAFGEWFSTGWALLYILVIPIPAIITG
TVLIPRMATRFLLVGSLSVLNLEAFDAVVEYMEDAEAALKDIAHLLQRLT
NINDTGASSVEQLFASLAQHHRHHRLSPSDLTHATNARVARALSQTNPPE
SSSFITYAELRDFLRHHGVHLPLRRFRALVRFIDLDLGGHVNLEDFRALL
RADHLFEAQRPHQCPSSARVARLLSQDTLNYHPQNSLHGQDAVFADVGQL
LRRGSRAFLSRVTRSMEQRDSSDRAGGVTAASGV*
back to top
Synonyms
Publications