NO02G00140.3, NO02G00140.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G00140.3
Unique Name	NO02G00140.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2630
Alignment location	chr2:53252..56977 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:53252..56977 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO02G00140.3 vs.

BLAST of NO02G00140.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G00140	NO02G00140	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00140.3	NO02G00140.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00140.3.cds1	NO02G00140.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00140.3.cds2	NO02G00140.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00140.3.cds3	NO02G00140.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00140.3.cds4	NO02G00140.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00140.3.cds5	NO02G00140.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00140.3.cds6	NO02G00140.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:53252..56977+
coding sequence from alignment at chr2:53252..56977+

mRNA sequence

>NO02G00140.3 ID=NO02G00140.3|Name=NO02G00140.3|organism=Nannochloropsis oceanica|type=mRNA|length=2630bp
CTCATATATATAGAAGACGCAGCTGAATTTGAAAATCGCCGACTCTCCGA
CCTCCGCTTCGGCCTCATAACGGCTCCAAACCTGAAGGCGTAGAGGTAGG
CCCGGCATGCATCCCTTTCTCTCTTCCTCCCCGCTATGGCACAGCGCATA
GTTAGCTATCCTACCCGCGACGCTGCAACGCTCACGACACCACACAAGTA
CAGGTGTAGCACGGAAACATGAGCCGTGTGATGAAAGATGATGCCGATTA
CCAAGGGAGCATTTGATTGGCTATCCACAAGCAAGTATTTCGTTATCGGT
CAAATGGCTTGATCAAAGCGAGATCTCTAGGAGGACGCAAGAGACGGTAC
GGGCATCATGCTGAACACTTCTGAGCTGCGGCCGCGACGGAAATTGGGGG
AGGGAGCGCACGGGGGGGGGAAGAATGTCTTTGAGATGGCACTGTCTGGG
ATGGACCAGATGATGATCGGGTGGATGATGGTGGCGGTCGTTTTCAGCCA
GCTCGTCCTTGACGAGGTACTAAGGCGGGCAGAGGCCTCAGTCGGGACGA
ATGCGCGTGCATGCCTGCGAGAGGTGTATAAGGAATTGTCCACGTTGGGT
CTGATCTCTTTCACGCTATTTATGGTCCAGAGCTTCGAGACTCAGGTGAA
CGAGGCCACGCTACTGGCGTTTGAGTACTCCCACATCTTCGTCTTCTCAT
TTGCCATCGTCTACGTGATTCAGTCTGCGGTTGTTATCGCCTGTATCAAC
CCCATCAAGCGACGCCTCATCCGCCTGCACGCGTACGGAGATGCCGTAGT
CGCCGCCGTCGCTGCCACCGTCCCCCAACCCTCTCAATATCCTCCCACTG
GTGATCGGAATAGTGATCTCTCCGTGCTAGACCGGCTATATGCCTTAATT
TGTTGTGCATTTGGCGGTGCATCGGGGGCGTCGCCGACACTGAGCCGCAG
CAAGGAGGCCGTACGCGCCTTCGACGGGTTCCGGGCTTTTCGTCGGAAGT
TTCTGAGGAAACATAGCTTGCCCGCATGTTTTCTATTCGACCACTACCTT
ATCGAAGTTTATGACCGCTGGGTAATATTGAAGCTGGATATTGCTACCTG
GTGCTGGGCGCTTATGTGCGTCATATTCGGTATTCACGCCCTAGTGGCGC
GCTTTCCCCACTTTGCAGCCTTCTGCCTCAACCGCTGGACATTCTTGTGC
TATGGCTGGCTCCTTCTTCTCGCGGATTACACACTCTTCATCCTTGTCCA
TAGGGTGCACGAACGTGTCCTCAAACAGGTCCGATCAAGTAACAGCGACA
GTCTCAGCGTCAGCACCACCTCTTCCACGTGTTCCATAGCCAACGGGAGC
ATGCGCTCGAGCTCTGCCGCGAGCGTCGATGCGGCTGGTGGTAGCGGTGG
GTCAGTTGGGCAGATGGGAGAGGAGGATGTCATGGAGGAGCTGCGACAGC
GGCGGGCGGCGCTGCATGCCCAGTATTTCCGTGAACAGAAAGAAAAAGAT
GGGGCTCATGAGATAATAGACGCCGGAATCGGAGAGAACGGAAATGAGCA
TGCGGATGTGGGTGTCCTGCGGCACCCTCCCCGGCACTGGCACTGGGGCG
TCGCCAACCTGCTGAATGCTGGTGGCATCACTAACAACACCCCTACGAAC
AACGTCGTTGCCGACGGGGCCCTAGGATTTACCCTGTGGGAAAGTTTTGC
TTTTAACTACGGCACCGAGGCACTCAGCATAATTAGGTGCCTGTATCTGG
CCGCGTGGCCATGCACATATACTGTGCCCGCTTTCGGGGAGTGGTTCTCC
ACCGGCTGGGCGCTCTTATACATCCTCGTTATTCCCATCCCGGCCATCAT
CACCGGTACCGTCCTCATTCCGCGTATGGCCACGCGATTCCTCCTTGTGG
GATCTCTTTCCGTCCTAAATCTCGAGGCGTTCGATGCGGTCGTCGAGTAC
ATGGAGGATGCCGAGGCCGCGCTTAAAGACATCGCGCATCTCCTGCAACG
CCTCACCAACATAAATGACACGGGAGCTAGCAGCGTGGAGCAGCTCTTCG
CTTCTCTGGCCCAGCACCATCGTCACCATCGCCTTTCTCCCTCCGATCTC
ACCCATGCCACCAACGCACGCGTCGCCCGTGCCCTTTCCCAGACCAACCC
CCCCGAAAGCAGTAGCTTCATCACATATGCCGAGCTCCGCGACTTCTTAC
GGCACCACGGAGTGCACCTCCCTCTTCGCCGCTTCCGCGCGCTGGTCCGC
TTCATCGACTTGGACCTAGGTGGCCACGTGAATTTGGAGGATTTCAGAGC
CCTACTCCGGGCCGATCACCTCTTTGAAGCCCAGAGGCCTCATCAGTGCC
CGTCGTCGGCTCGTGTTGCACGACTCCTCAGCCAGGATACCCTGAACTAT
CATCCCCAAAATAGTTTGCATGGGCAGGACGCGGTGTTTGCAGACGTGGG
GCAATTGCTTCGGCGAGGGAGCAGAGCCTTTTTAAGTCGAGTTACGCGGT
CTATGGAACAAAGGGATAGTAGTGATCGAGCAGGGGGTGTAACTGCGGCT
TCGGGGGTGTAATTTAATCGGTTGTTGTACATAATTAATGCTATAAAGTA
GAAAAATCTCGACCTTTTCAACGCGTCTAC

protein sequence of NO02G00140.3

>NO02G00140.3-protein ID=NO02G00140.3-protein|Name=NO02G00140.3|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp
MLNTSELRPRRKLGEGAHGGGKNVFEMALSGMDQMMIGWMMVAVVFSQLV
LDEVLRRAEASVGTNARACLREVYKELSTLGLISFTLFMVQSFETQVNEA
TLLAFEYSHIFVFSFAIVYVIQSAVVIACINPIKRRLIRLHAYGDAVVAA
VAATVPQPSQYPPTGDRNSDLSVLDRLYALICCAFGGASGASPTLSRSKE
AVRAFDGFRAFRRKFLRKHSLPACFLFDHYLIEVYDRWVILKLDIATWCW
ALMCVIFGIHALVARFPHFAAFCLNRWTFLCYGWLLLLADYTLFILVHRV
HERVLKQVRSSNSDSLSVSTTSSTCSIANGSMRSSSAASVDAAGGSGGSV
GQMGEEDVMEELRQRRAALHAQYFREQKEKDGAHEIIDAGIGENGNEHAD
VGVLRHPPRHWHWGVANLLNAGGITNNTPTNNVVADGALGFTLWESFAFN
YGTEALSIIRCLYLAAWPCTYTVPAFGEWFSTGWALLYILVIPIPAIITG
TVLIPRMATRFLLVGSLSVLNLEAFDAVVEYMEDAEAALKDIAHLLQRLT
NINDTGASSVEQLFASLAQHHRHHRLSPSDLTHATNARVARALSQTNPPE
SSSFITYAELRDFLRHHGVHLPLRRFRALVRFIDLDLGGHVNLEDFRALL
RADHLFEAQRPHQCPSSARVARLLSQDTLNYHPQNSLHGQDAVFADVGQL
LRRGSRAFLSRVTRSMEQRDSSDRAGGVTAASGV*

mRNA from alignment at chr2:53252..56977+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G00140.3 ID=NO02G00140.3|Name=NO02G00140.3|organism=Nannochloropsis oceanica|type=mRNA|length=3726bp|location=Sequence derived from alignment at chr2:53252..56977+ (Nannochloropsis oceanica)
CTCATATATATAGAAGACGCAGCTGAATTTGAAAATCGCCGACTCTCCGA
CCTCCGCTTCGGCCTCATAACGGCTCCAAACCTGAAGGCGTAGAGGTAGG
CCCGGCATGCATCCCTTTCTCTCTTCCTCCCCGCTATGGCACAGCGCATA
GTTAGCTATCCTACCCGCGACGCTGCAACGCTCACGACACCACACAAGTA
CAGGTGTAGCACGGAAACATGAGCCGTGTGATGAAAGATGATGCCGATTA
CCAAGGGAGCATTTGATTGGCTATCCACAAGCAAGTATTTCGTTATCGGT
CAAATGGCTTGATCAAAGCGAGATCTGTACGTTGTTCTTGTCTCACTCCT
TCGATAAACGTGTTTTGACCCGATCTGGCACGCGGACGGCATCGACGCGT
GTCGTGCTGCTGACTTCCACACTGTAGAAAGAATCCCGCCTAGTGCGCGA
AGCCTCAGGCAATGTCCAAAGAATGTATTCTATGGTGCTGGGAGGCGCGA
TTCAGGACGACAGTGGAATAGTAAAGCGCAATGGCTGGGGTCTGTGCGTG
ATTTGCAGTAAACTTACGGCAACATAGTTGACATCACTAATAACTACTAT
CCCCCCACGATCATATCGCATGTCCCATAACATAGCAGCTAGGAGGACGC
AAGAGACGGTACGGGCATCATGCTGAACACTTCTGAGCTGCGGCCGCGAC
GGAAATTGGGGGAGGGAGCGCACGGGGGGGGGAAGAATGTCTTTGAGATG
GCACTGTCTGGGATGGACCAGATGATGATCGGGTGGATGATGGTGGCGGT
CGTTTTCAGCCAGCTCGTCCTTGACGAGGTACTAAGGCGGGCAGAGGCCT
CAGTCGGGACGAATGCGCGTGCATGCCTGCGAGAGGTGTATAAGGAATTG
TCCACGGTCAGTACAGTACTACTTATGCCTGCCCGTCCGTCTTCCTCCCA
CTTCCTCTCCCCCGCCTTTGCTTCCTCCCCTTTCCTCCTCATCCAAGCCC
TTCCTCCACACTCTATCTTCACTACTTTTGCCAATCTCCTACGCCATATG
ATGATGCACCATGCCAGGAATGCCACGGAAGTTGTCGAGGCCGGATAAGG
GTCAGCGCGCCACGACAATAGCCCCTTCCATCCATTCGTGGATTTCTCTC
TCAATCACTTACTAAACTCCTCTCTCCCGCCCTCTCTGCCTACCCCTCCC
CCTCCCTCCCTTTCCTCTGCATATCCACAGTTGGGTCTGATCTCTTTCAC
GCTATTTATGGTCCAGAGCTTCGAGACTCAGGTGAACGAGGCCACGCTAC
TGGCGTTTGAGGTACGGAAATAATAACGGCACCTCATGCCACCTTTCTCC
CAAATGCATCACCGCCATCTCTCGTCACCACATCCACAGTACTCCCACAT
CTTCGTCTTCTCATTTGCCATCGTCTACGTGATTCAGTCTGCGGTTGTTA
TCGCCTGTATCAACCCCATCAAGCGACGCCTCATCCGCCTGCACGCGTAC
GGAGATGCCGTAGTCGCCGCCGTCGCTGCCACCGTCCCCCAACCCTCTCA
ATATCCTCCCACTGGTGATCGGAATAGTGATCTCTCCGTGCTAGACCGGC
TATATGCCTTAATTTGTTGTGCATTTGGCGGTGCATCGGGGGCGTCGCCG
ACACTGAGCCGCAGCAAGGAGGCCGTACGCGCCTTCGACGGGTTCCGGGC
TTTTCGTCGGAAGTTTCTGAGGAAACATAGCTTGCCCGCATGTTTTCTAT
TCGACCACTACCTTATCGAAGTTTATGACCGCTGGGTAATATTGAAGCTG
GATATTGCTACCTGGTGCTGGGCGCTTATGTGCGTCATATTCGGTATTCA
CGCCCTAGTGGCGCGCTTTCCCCACTTTGCAGCCTTCTGCCTCAACCGCT
GGACATTCTTGTGCTATGGCTGGCTCCTTCTTCTCGCGGATTACACACTC
TTCATCCTTGTCCATAGGGTGCGTGGGGATGGGGTAGGCTGCTCTGCTTG
CATGACAGGCAAATCTGAACTCACCTCACCCACCACCATACTCTACCGAT
CCCATCCATCAGGTGCACGAACGTGTCCTCAAACAGGTCCGATCAAGTAA
CAGCGACAGTCTCAGCGTCAGCACCACCTCTTCCACGTGTTCCATAGCCA
ACGGGAGCATGCGCTCGAGCTCTGCCGCGAGCGTCGATGCGGCTGGTGGT
AGCGGTGGGTCAGTTGGGCAGATGGGAGAGGAGGATGTCATGGAGGAGCT
GCGACAGCGGCGGGCGGCGCTGCATGCCCAGTATTTCCGTGAACAGAAAG
AAAAAGATGGGGCTCATGAGATAATAGACGCCGGAATCGGAGAGAACGGA
AATGAGCATGCGGATGTGGGTGTCCTGCGGCACCCTCCCCGGCACTGGCA
CTGGGGCGTCGCCAACCTGCTGAATGCTGGTGGCATCACTAACAACACCC
CTACGAACAACGTCGTTGCCGACGGGGCCCTAGGATTTACCCTGTGGGAA
AGTTTTGCTTTTAACTACGGCACCGAGGCACTCAGCATAATTAGGTGCCT
GTATCTGGCCGCGTGGCCATGCACATATACTGTGCCCGCTTTCGGGGAGT
GGTTCTCCACCGGCTGGGCGCTCTTATACATCCTCGTTATTCCCATCCCG
GTATGTCTTTGTGTTTTTGGTCGCACTCCAATCTTTTCCAAGCAGTGATA
GGAATGCCAATGCCACGCCTATTATCTTAATTTGTCTCTTCTAACATCAA
ATACGTGTAAATAATCTGCAGGCCATCATCACCGGTACCGTCCTCATTCC
GCGTATGGCCACGCGATTCCTCCTTGTGGGATCTCTTTCCGTCCTAAATC
TCGAGGCGTTCGATGCGGTCGTCGAGGTGAGACCATAGACTTATCTTGCG
TGTATGTTTGTGAGCGTGAGTGTACCGGTACTTAAAGACGAAGTCCGGTT
GGTGGTTTGAGTGTACTCTTGATTTTTTTCCGCGTCTTGCTGCCCAGTTC
GTTCAATTTTCTCCCCTATCCCACTTAATTACGACACGAAAAGTACATGG
AGGATGCCGAGGCCGCGCTTAAAGACATCGCGCATCTCCTGCAACGCCTC
ACCAACATAAATGACACGGGAGCTAGCAGCGTGGAGCAGCTCTTCGCTTC
TCTGGCCCAGCACCATCGTCACCATCGCCTTTCTCCCTCCGATCTCACCC
ATGCCACCAACGCACGCGTCGCCCGTGCCCTTTCCCAGACCAACCCCCCC
GAAAGCAGTAGCTTCATCACATATGCCGAGCTCCGCGACTTCTTACGGCA
CCACGGAGTGCACCTCCCTCTTCGCCGCTTCCGCGCGCTGGTCCGCTTCA
TCGACTTGGACCTAGGTGGCCACGTGAATTTGGAGGATTTCAGAGCCCTA
CTCCGGGCCGATCACCTCTTTGAAGCCCAGAGGCCTCATCAGTGCCCGTC
GTCGGCTCGTGTTGCACGACTCCTCAGCCAGGATACCCTGAACTATCATC
CCCAAAATAGTTTGCATGGGCAGGACGCGGTGTTTGCAGACGTGGGGCAA
TTGCTTCGGCGAGGGAGCAGAGCCTTTTTAAGTCGAGTTACGCGGTCTAT
GGAACAAAGGGATAGTAGTGATCGAGCAGGGGGTGTAACTGCGGCTTCGG
GGGTGTAATTTAATCGGTTGTTGTACATAATTAATGCTATAAAGTAGAAA
AATCTCGACCTTTTCAACGCGTCTAC

Coding sequence (CDS) from alignment at chr2:53252..56977+

>NO02G00140.3 ID=NO02G00140.3|Name=NO02G00140.3|organism=Nannochloropsis oceanica|type=CDS|length=2205bp|location=Sequence derived from alignment at chr2:53252..56977+ (Nannochloropsis oceanica)
ATGCTGAACACTTCTGAGCTGCGGCCGCGACGGAAATTGGGGGAGGGAGC
GCACGGGGGGGGGAAGAATGTCTTTGAGATGGCACTGTCTGGGATGGACC
AGATGATGATCGGGTGGATGATGGTGGCGGTCGTTTTCAGCCAGCTCGTC
CTTGACGAGGTACTAAGGCGGGCAGAGGCCTCAGTCGGGACGAATGCGCG
TGCATGCCTGCGAGAGGTGTATAAGGAATTGTCCACGTTGGGTCTGATCT
CTTTCACGCTATTTATGGTCCAGAGCTTCGAGACTCAGGTGAACGAGGCC
ACGCTACTGGCGTTTGAGTACTCCCACATCTTCGTCTTCTCATTTGCCAT
CGTCTACGTGATTCAGTCTGCGGTTGTTATCGCCTGTATCAACCCCATCA
AGCGACGCCTCATCCGCCTGCACGCGTACGGAGATGCCGTAGTCGCCGCC
GTCGCTGCCACCGTCCCCCAACCCTCTCAATATCCTCCCACTGGTGATCG
GAATAGTGATCTCTCCGTGCTAGACCGGCTATATGCCTTAATTTGTTGTG
CATTTGGCGGTGCATCGGGGGCGTCGCCGACACTGAGCCGCAGCAAGGAG
GCCGTACGCGCCTTCGACGGGTTCCGGGCTTTTCGTCGGAAGTTTCTGAG
GAAACATAGCTTGCCCGCATGTTTTCTATTCGACCACTACCTTATCGAAG
TTTATGACCGCTGGGTAATATTGAAGCTGGATATTGCTACCTGGTGCTGG
GCGCTTATGTGCGTCATATTCGGTATTCACGCCCTAGTGGCGCGCTTTCC
CCACTTTGCAGCCTTCTGCCTCAACCGCTGGACATTCTTGTGCTATGGCT
GGCTCCTTCTTCTCGCGGATTACACACTCTTCATCCTTGTCCATAGGGTG
CACGAACGTGTCCTCAAACAGGTCCGATCAAGTAACAGCGACAGTCTCAG
CGTCAGCACCACCTCTTCCACGTGTTCCATAGCCAACGGGAGCATGCGCT
CGAGCTCTGCCGCGAGCGTCGATGCGGCTGGTGGTAGCGGTGGGTCAGTT
GGGCAGATGGGAGAGGAGGATGTCATGGAGGAGCTGCGACAGCGGCGGGC
GGCGCTGCATGCCCAGTATTTCCGTGAACAGAAAGAAAAAGATGGGGCTC
ATGAGATAATAGACGCCGGAATCGGAGAGAACGGAAATGAGCATGCGGAT
GTGGGTGTCCTGCGGCACCCTCCCCGGCACTGGCACTGGGGCGTCGCCAA
CCTGCTGAATGCTGGTGGCATCACTAACAACACCCCTACGAACAACGTCG
TTGCCGACGGGGCCCTAGGATTTACCCTGTGGGAAAGTTTTGCTTTTAAC
TACGGCACCGAGGCACTCAGCATAATTAGGTGCCTGTATCTGGCCGCGTG
GCCATGCACATATACTGTGCCCGCTTTCGGGGAGTGGTTCTCCACCGGCT
GGGCGCTCTTATACATCCTCGTTATTCCCATCCCGGCCATCATCACCGGT
ACCGTCCTCATTCCGCGTATGGCCACGCGATTCCTCCTTGTGGGATCTCT
TTCCGTCCTAAATCTCGAGGCGTTCGATGCGGTCGTCGAGTACATGGAGG
ATGCCGAGGCCGCGCTTAAAGACATCGCGCATCTCCTGCAACGCCTCACC
AACATAAATGACACGGGAGCTAGCAGCGTGGAGCAGCTCTTCGCTTCTCT
GGCCCAGCACCATCGTCACCATCGCCTTTCTCCCTCCGATCTCACCCATG
CCACCAACGCACGCGTCGCCCGTGCCCTTTCCCAGACCAACCCCCCCGAA
AGCAGTAGCTTCATCACATATGCCGAGCTCCGCGACTTCTTACGGCACCA
CGGAGTGCACCTCCCTCTTCGCCGCTTCCGCGCGCTGGTCCGCTTCATCG
ACTTGGACCTAGGTGGCCACGTGAATTTGGAGGATTTCAGAGCCCTACTC
CGGGCCGATCACCTCTTTGAAGCCCAGAGGCCTCATCAGTGCCCGTCGTC
GGCTCGTGTTGCACGACTCCTCAGCCAGGATACCCTGAACTATCATCCCC
AAAATAGTTTGCATGGGCAGGACGCGGTGTTTGCAGACGTGGGGCAATTG
CTTCGGCGAGGGAGCAGAGCCTTTTTAAGTCGAGTTACGCGGTCTATGGA
ACAAAGGGATAGTAGTGATCGAGCAGGGGGTGTAACTGCGGCTTCGGGGG
TGTAA

Synonyms

Publications