scaffold_141, scaffold_141 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_141
Unique Name	scaffold_141
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	32424
Alignment location	jgi.p\|Nanoce1779_2\|85448:7560..8318 +
Alignment location	jgi.p\|Nanoce1779_2\|85448:7560..8318 +
Alignment location	CDS_12280:7677..8222 +
Alignment location	jgi.p\|Nanoce1779_2\|617592:693..2215 -
Alignment location	jgi.p\|Nanoce1779_2\|617592:693..2215 -
Alignment location	CDS_12278:2092..2099 -
Alignment location	CDS_12278:1732..1869 -
Alignment location	CDS_12278:1017..1206 -
Alignment location	CDS_12278:693..815 -
Alignment location	jgi.p\|Nanoce1779_2\|617606:8668..10532 -
Alignment location	jgi.p\|Nanoce1779_2\|617606:8668..10532 -
Alignment location	CDS_12281:10158..10374 -
Alignment location	CDS_12281:9862..9991 -
Alignment location	CDS_12281:9637..9745 -
Alignment location	CDS_12281:8840..9472 -
Alignment location	jgi.p\|Nanoce1779_2\|617619:27507..30563 +
Alignment location	jgi.p\|Nanoce1779_2\|617619:27507..30563 +
Alignment location	CDS_12284:27527..28381 +
Alignment location	CDS_12284:28504..28788 +
Alignment location	CDS_12284:28845..28928 +
Alignment location	CDS_12284:29162..29316 +
Alignment location	CDS_12284:29474..29627 +
Alignment location	jgi.p\|Nanoce1779_2\|617625:30539..32424 +
Alignment location	jgi.p\|Nanoce1779_2\|617625:30539..32424 +
Alignment location	CDS_12285:30661..30840 +
Alignment location	CDS_12285:30903..31294 +
Alignment location	CDS_12285:31335..31470 +
Alignment location	jgi.p\|Nanoce1779_2\|634911:10614..11397 +
Alignment location	jgi.p\|Nanoce1779_2\|634911:10614..11397 +
Alignment location	CDS_12282:10744..10902 +
Alignment location	CDS_12282:11091..11164 +
Alignment location	CDS_12282:11298..11397 +
Alignment location	jgi.p\|Nanoce1779_2\|675708:1884..5573 +
Alignment location	jgi.p\|Nanoce1779_2\|675708:1884..5573 +
Alignment location	CDS_12279:3063..3124 +
Alignment location	CDS_12279:3353..3504 +
Alignment location	CDS_12279:3633..3715 +
Alignment location	CDS_12279:3987..4168 +
Alignment location	CDS_12279:4344..4541 +
Alignment location	CDS_12279:4691..4808 +
Alignment location	CDS_12279:4907..5227 +
Alignment location	jgi.p\|Nanoce1779_2\|675711:22970..25785 -
Alignment location	jgi.p\|Nanoce1779_2\|675711:22970..25785 -
Alignment location	CDS_12283:24760..25716 -
Alignment location	CDS_12283:24437..24504 -
Alignment location	CDS_12283:23902..24349 -
Alignment location	jgi.p\|Nanoce1779_2\|85448:7677..8222 +
Alignment location	jgi.p\|Nanoce1779_2\|617592:693..2099 -
Alignment location	jgi.p\|Nanoce1779_2\|617606:8840..10374 -
Alignment location	jgi.p\|Nanoce1779_2\|617619:27527..29627 +
Alignment location	jgi.p\|Nanoce1779_2\|617625:30661..31470 +
Alignment location	jgi.p\|Nanoce1779_2\|634911:10744..11397 +
Alignment location	jgi.p\|Nanoce1779_2\|675708:3063..5227 +
Alignment location	jgi.p\|Nanoce1779_2\|675711:23902..25716 -
Alignment location	ncniL019:694..30563 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|85448	gene	jgi.p\|Nanoce1779_2\|85448:7560..8318 +
jgi.p\|Nanoce1779_2\|85448	mRNA	jgi.p\|Nanoce1779_2\|85448:7560..8318 +
CDS_12280	CDS	CDS_12280:7677..8222 +
jgi.p\|Nanoce1779_2\|617592	gene	jgi.p\|Nanoce1779_2\|617592:693..2215 -
jgi.p\|Nanoce1779_2\|617592	mRNA	jgi.p\|Nanoce1779_2\|617592:693..2215 -
CDS_12278	CDS	CDS_12278:2092..2099 -
CDS_12278	CDS	CDS_12278:1732..1869 -
CDS_12278	CDS	CDS_12278:1017..1206 -
CDS_12278	CDS	CDS_12278:693..815 -
jgi.p\|Nanoce1779_2\|617606	gene	jgi.p\|Nanoce1779_2\|617606:8668..10532 -
jgi.p\|Nanoce1779_2\|617606	mRNA	jgi.p\|Nanoce1779_2\|617606:8668..10532 -
CDS_12281	CDS	CDS_12281:10158..10374 -
CDS_12281	CDS	CDS_12281:9862..9991 -
CDS_12281	CDS	CDS_12281:9637..9745 -
CDS_12281	CDS	CDS_12281:8840..9472 -
jgi.p\|Nanoce1779_2\|617619	gene	jgi.p\|Nanoce1779_2\|617619:27507..30563 +
jgi.p\|Nanoce1779_2\|617619	mRNA	jgi.p\|Nanoce1779_2\|617619:27507..30563 +
CDS_12284	CDS	CDS_12284:27527..28381 +
CDS_12284	CDS	CDS_12284:28504..28788 +
CDS_12284	CDS	CDS_12284:28845..28928 +
CDS_12284	CDS	CDS_12284:29162..29316 +
CDS_12284	CDS	CDS_12284:29474..29627 +
jgi.p\|Nanoce1779_2\|617625	gene	jgi.p\|Nanoce1779_2\|617625:30539..32424 +
jgi.p\|Nanoce1779_2\|617625	mRNA	jgi.p\|Nanoce1779_2\|617625:30539..32424 +
CDS_12285	CDS	CDS_12285:30661..30840 +
CDS_12285	CDS	CDS_12285:30903..31294 +
CDS_12285	CDS	CDS_12285:31335..31470 +
jgi.p\|Nanoce1779_2\|634911	gene	jgi.p\|Nanoce1779_2\|634911:10614..11397 +
jgi.p\|Nanoce1779_2\|634911	mRNA	jgi.p\|Nanoce1779_2\|634911:10614..11397 +
CDS_12282	CDS	CDS_12282:10744..10902 +
CDS_12282	CDS	CDS_12282:11091..11164 +
CDS_12282	CDS	CDS_12282:11298..11397 +
jgi.p\|Nanoce1779_2\|675708	gene	jgi.p\|Nanoce1779_2\|675708:1884..5573 +
jgi.p\|Nanoce1779_2\|675708	mRNA	jgi.p\|Nanoce1779_2\|675708:1884..5573 +
CDS_12279	CDS	CDS_12279:3063..3124 +
CDS_12279	CDS	CDS_12279:3353..3504 +
CDS_12279	CDS	CDS_12279:3633..3715 +
CDS_12279	CDS	CDS_12279:3987..4168 +
CDS_12279	CDS	CDS_12279:4344..4541 +
CDS_12279	CDS	CDS_12279:4691..4808 +
CDS_12279	CDS	CDS_12279:4907..5227 +
jgi.p\|Nanoce1779_2\|675711	gene	jgi.p\|Nanoce1779_2\|675711:22970..25785 -
jgi.p\|Nanoce1779_2\|675711	mRNA	jgi.p\|Nanoce1779_2\|675711:22970..25785 -
CDS_12283	CDS	CDS_12283:24760..25716 -
CDS_12283	CDS	CDS_12283:24437..24504 -
CDS_12283	CDS	CDS_12283:23902..24349 -
jgi.p\|Nanoce1779_2\|85448	polypeptide	jgi.p\|Nanoce1779_2\|85448:7677..8222 +
jgi.p\|Nanoce1779_2\|617592	polypeptide	jgi.p\|Nanoce1779_2\|617592:693..2099 -
jgi.p\|Nanoce1779_2\|617606	polypeptide	jgi.p\|Nanoce1779_2\|617606:8840..10374 -
jgi.p\|Nanoce1779_2\|617619	polypeptide	jgi.p\|Nanoce1779_2\|617619:27527..29627 +
jgi.p\|Nanoce1779_2\|617625	polypeptide	jgi.p\|Nanoce1779_2\|617625:30661..31470 +
jgi.p\|Nanoce1779_2\|634911	polypeptide	jgi.p\|Nanoce1779_2\|634911:10744..11397 +
jgi.p\|Nanoce1779_2\|675708	polypeptide	jgi.p\|Nanoce1779_2\|675708:3063..5227 +
jgi.p\|Nanoce1779_2\|675711	polypeptide	jgi.p\|Nanoce1779_2\|675711:23902..25716 -
ncniL019	syntenic_region	ncniL019:694..30563 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications