jgi.p|Nanoce1779_2|85448, mRNA_12280 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|85448
Unique NamemRNA_12280
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length759
Alignment locationscaffold_141:7560..8318 +

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Properties
Property NameValue
TranscriptId85534
TrackFilteredModels2
ProteinId85448
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:7560..8318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|85448gene_12280Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|85448mRNA_12280-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12280CDS_12280Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12280 ID=mRNA_12280|Name=jgi.p|Nanoce1779_2|85448|organism=Nannochloropsis oceanica|type=mRNA|length=759bp
GGCAGCGGGAGGGAGGGAAGACAAGGGAGAAGAGGAGGAGTACAGGAGGT
CGTGAAGTATGGCCGTATCGCCAGTACGAGCGGCGATGAAGAGGGATGAG
AGGTGGTTCGTCTCATCATGGCCCGGCGTAGTGGCCGTGTCGAGTGTGCC
TGCTCCTCCCGCCGCCCCATCGAGTGTGCCTGCTCCTCCCGCCGCCCCAT
CTGCAGGCGGAAAGAGCCCGAGGTCCAGCAGCTTTTTTTCTTCCGTACAA
TTCTTCCTTTTCTTGCTGTCCCCCCTCCTTACTGGTACCTACCTCCTCCG
CCTCTTCGTCGTCCTCCTCCCCTTCGGTCTCGCTGTCGCAGGAAGAGGAG
GAAGAGAAGGCCTCGGCTGTCGTGCAACTCGACACCGTGGACGCCTGTTT
TTCTATTGAATGCGGAGTCGGTAGATGAGGAGGAATCACGCCCGTGGATC
CCAGGAGAGCGGAGAGGGGAAGAGGAGGAAGCTTGCCGTCTCCGGCACTG
TTATAGGGTTTCAGGTTGGCGTGGTCCTTGTCGTCGTGATTCACAAAGCG
GGCAGGGGGAGGGGCCCGTCGCCCGCTTCGCCGCGGAGAAAGGGACATGG
ATTGTTGGACACCTTGTCGTATTGTTGGCGGTGTGGCTGTTGAGGAGGGC
AAGGAAGGGTTAGGGTTAGATAGGGGTAAAGGGTAGGGTTAGCTAGGGAT
AGGGGAAGTGTTGTTGCTGGTGATTGAAGATCAAAGCACCAAGCACGGGC
ACCTTTAAC
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protein sequence of jgi.p|Nanoce1779_2|85448

>mRNA_12280-protein ID=mRNA_12280-protein|Name=jgi.p|Nanoce1779_2|85448|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MARRSGRVECACSSRRPIECACSSRRPICRRKEPEVQQLFFFRTILPFLA
VPPPYWYLPPPPLRRPPPLRSRCRRKRRKRRPRLSCNSTPWTPVFLLNAE
SVDEEESRPWIPGERRGEEEEACRLRHCYRVSGWRGPCRRDSQSGQGEGP
VARFAAEKGTWIVGHLVVLLAVWLLRRARKG*
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mRNA from alignment at scaffold_141:7560..8318+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12280 ID=mRNA_12280|Name=jgi.p|Nanoce1779_2|85448|organism=Nannochloropsis oceanica|type=mRNA|length=759bp|location=Sequence derived from alignment at scaffold_141:7560..8318+ (Nannochloropsis oceanica)
GGCAGCGGGAGGGAGGGAAGACAAGGGAGAAGAGGAGGAGTACAGGAGGT
CGTGAAGTATGGCCGTATCGCCAGTACGAGCGGCGATGAAGAGGGATGAG
AGGTGGTTCGTCTCATCATGGCCCGGCGTAGTGGCCGTGTCGAGTGTGCC
TGCTCCTCCCGCCGCCCCATCGAGTGTGCCTGCTCCTCCCGCCGCCCCAT
CTGCAGGCGGAAAGAGCCCGAGGTCCAGCAGCTTTTTTTCTTCCGTACAA
TTCTTCCTTTTCTTGCTGTCCCCCCTCCTTACTGGTACCTACCTCCTCCG
CCTCTTCGTCGTCCTCCTCCCCTTCGGTCTCGCTGTCGCAGGAAGAGGAG
GAAGAGAAGGCCTCGGCTGTCGTGCAACTCGACACCGTGGACGCCTGTTT
TTCTATTGAATGCGGAGTCGGTAGATGAGGAGGAATCACGCCCGTGGATC
CCAGGAGAGCGGAGAGGGGAAGAGGAGGAAGCTTGCCGTCTCCGGCACTG
TTATAGGGTTTCAGGTTGGCGTGGTCCTTGTCGTCGTGATTCACAAAGCG
GGCAGGGGGAGGGGCCCGTCGCCCGCTTCGCCGCGGAGAAAGGGACATGG
ATTGTTGGACACCTTGTCGTATTGTTGGCGGTGTGGCTGTTGAGGAGGGC
AAGGAAGGGTTAGGGTTAGATAGGGGTAAAGGGTAGGGTTAGCTAGGGAT
AGGGGAAGTGTTGTTGCTGGTGATTGAAGATCAAAGCACCAAGCACGGGC
ACCTTTAAC
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Coding sequence (CDS) from alignment at scaffold_141:7560..8318+

>mRNA_12280 ID=mRNA_12280|Name=jgi.p|Nanoce1779_2|85448|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_141:7560..8318+ (Nannochloropsis oceanica)
ATGGCCCGGCGTAGTGGCCGTGTCGAGTGTGCCTGCTCCTCCCGCCGCCC
CATCGAGTGTGCCTGCTCCTCCCGCCGCCCCATCTGCAGGCGGAAAGAGC
CCGAGGTCCAGCAGCTTTTTTTCTTCCGTACAATTCTTCCTTTTCTTGCT
GTCCCCCCTCCTTACTGGTACCTACCTCCTCCGCCTCTTCGTCGTCCTCC
TCCCCTTCGGTCTCGCTGTCGCAGGAAGAGGAGGAAGAGAAGGCCTCGGC
TGTCGTGCAACTCGACACCGTGGACGCCTGTTTTTCTATTGAATGCGGAG
TCGGTAGATGAGGAGGAATCACGCCCGTGGATCCCAGGAGAGCGGAGAGG
GGAAGAGGAGGAAGCTTGCCGTCTCCGGCACTGTTATAGGGTTTCAGGTT
GGCGTGGTCCTTGTCGTCGTGATTCACAAAGCGGGCAGGGGGAGGGGCCC
GTCGCCCGCTTCGCCGCGGAGAAAGGGACATGGATTGTTGGACACCTTGT
CGTATTGTTGGCGGTGTGGCTGTTGAGGAGGGCAAGGAAGGGTTAG
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Synonyms
Publications