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Properties
| Property Name | Value |
|---|
| TranscriptId | 675797 |
| Track | FilteredModels2 |
| ProteinId | 675711 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:22970..25785 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_12283 ID=mRNA_12283|Name=jgi.p|Nanoce1779_2|675711|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp
CACCACCAGAATTACTGCATCCAAGTCGGGGAAACCATCAATCTTCAGGC
CTACGATCTGCCATTCACGATGCCGCATGATGACTTTGCGTACCATCACG
GACAGGCCAGGCACGGCAACAGCATGTCTCTTCACCCCTACGAGCCGCAG
CACCAGCAGCAGCAGGTCCAGCTGCAGCAGCAATTTGGGGGATACAGCTC
CCCCAACAGCAGCGACGAGGGGAGTTTGAAAGGAGACTACAGCTGTCAGG
GCGGGGCAGGGGACTATATGAGTGTCAGTGGAGAACAGACAAACTACTAT
TCTGGCTCCTCCTACCCCTATCACCACGAGCAACACGAGCAGCCCCCCGA
CCCGCACTACGATGGACCTCTCCCTCCCCCTTACTTTGCATTTAGGTACA
CCACGATGGCGACTGGCATTACCTATCATAGATACATGCCCTCCTCCTCC
TACGACTCGCAGGCATCGTACTCTCCCTTCTATGGGAACCCGCAGCCTCA
TGGCGGCAATACGGAGGCGAGCACTTCCCCTCACTATTACCAGCAGCAGC
AGTTGCAGGAGGGGATGAGAGGAGGAATTGAGGGAGGAATGAACCGCAGC
AACTTCAATCCTCCCCACCCTGACATGATAATGACGGCGGTGATACAGCA
AGGCAGCAGTAATAGCAAGTGTAAATATAGTAATGGCACGGATGAGGACA
TGAAGGCAATGGAGCAACACAAGCGAGGAATTGTGGAGCAGACGAGAGAG
AGAGGGTCGGAGAAGGAAACGCGAGAGGAGGTATTGTCTAATGGCGTGAG
AAAAATCACACGTGGTGAATTGACGCACTATATCTATCCCGAGGATGTGG
CGCGGATGACTCAGGAGGAGATCATGATGGAGATGTCTGCCTCCAGCCAT
ATCCTCAATGCTAACCTGCCCTTAGAGAGGCAGCAGCACCATCCTCAGCA
GTTTCCGCAGCATCACTACCACCACCACCACCAGCAGCAGCACTATCAAT
GCTACACCCCACCGGGCTCGCCCCCGCTTCAAAAACAGATTCAGTCGAAG
GTACAAGAGCAGCAGCAGCAGAAGCAGCAGCAGTCGCCCGGAATTTTAGA
TAAGAGTGGGGGCAGCAGCAGTTGTAGTGACAGTGAGAACAGCAAGGGAG
GCAAGAAGATCAGGAGCTACCGCACCAAGAGGAGAGGGCTGCTCCGCACC
GCCACCAACAACACCCGCAACAAGTTTCCCAGCGAAAAACAGCAGCTAAG
ACAGCAGCACCAGCAGCAGAACCAGCCCAAGTGGAACGGTTTCCCCCGCA
TGCCTCTCTTCTCGACCACAGACTACGCGGGGAAGGCCTACACATTCTAC
CGACCGGATGACTACCAGGACGTCATTTGCTACCCCACCCGTTTCTTCTT
CCACTGCCCCCAGCCTCCCCTTGCCCTTCCGGCCCGGGAAATGGAGCGCC
GCGGCCTGCCGTACGGGCCAACCTATGGACCATTGGCGCCATGGCATTTC
CCTTATGAGCGACCACAGCCGGTGGCGGCGGAAGGGAAGTGAGAGAGGGA
AAGAGAAGGGATGGTGGTGGATTGCGTTTATGTCTCAACAGAGATGAACA
GGAACGGACTGGGGGGATCTAAGAGCCTGTGCATAAAAGAGATAGGAAAA
TATGAATCTGTATACACAAATATGAGCACCGACAGAGGAAAAGGAAAAAT
AAATGGATAGAACAAGAGTTTATAAAATAATCACTCAGACAAGTTGTATT
TTAAGGAAAAGATTTGCACTAGGCATGAACCGAAGGCAATCAGCAAAAAA
TGCAGAACCGACCAGACGAAATCAGCAGAGACAATATAAAGTTTGAGAAT
TAGGGAGGAATAAAGGACGTAAGGTAGTTTTTATACTCTAAAATATCGAC
TTTCGAGAGTGCGGCGACCCAGATAGGAAATTAAAAAAGAGTAGAGTGAA
AAAAGACGAAGGAACAAAGCAGAGAAGAGGACGTAAAAATTTTATCCATG
CATGTAATTGATTGGTACAAATTTGGACTACTAGCGAGTAAAAATACATT
ACTGAAAAGCCGGAAATGTGTTGTGAAAACAAAGCTAAAAATATAACGAC
AAGCGACTGGCCCGTTCCGACAGAAAGCAAGCAAGAAGCATCATATTGAC
AGTGGTAGTGAGAGATATGGAAAGAAAAGATAAAATTCACGAAGATAACA
AGGACTATCAGAGTCTGATTGAAGGGGCAATTTGTGCAGAATACGAGAAA
AAAAGGCAGTCATTTACTCGCCTTAATACCCACTCGGGCAATCTCAAAGA
GATGGTAGAAAATAGAGGGAAAAGAGAGCGTCATTCACCAAATGGAGGGC
TATAGAAAGTGCAGCCAGCTTGTCGATCGAGATAGAGGAAGAGGAAAATA
TAGAGCGAGAGTAGTAGAGTGAGTACGCATCTATCCACACACAAATTTAC
GCACATATCCATGTTCACTTGTGC back to topprotein sequence of jgi.p|Nanoce1779_2|675711 >mRNA_12283-protein ID=mRNA_12283-protein|Name=jgi.p|Nanoce1779_2|675711|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MPHDDFAYHHGQARHGNSMSLHPYEPQHQQQQVQLQQQFGGYSSPNSSDE
GSLKGDYSCQGGAGDYMSVSGEQTNYYSGSSYPYHHEQHEQPPDPHYDGP
LPPPYFAFRYTTMATGITYHRYMPSSSYDSQASYSPFYGNPQPHGGNTEA
STSPHYYQQQQLQEGMRGGIEGGMNRSNFNPPHPDMIMTAVIQQGSSNSK
CKYSNGTDEDMKAMEQHKRGIVEQTRERGSEKETREEVLSNGVRKITRGE
LTHYIYPEDVARMTQEEIMMEMSASSHILNANLPLERQQHHPQQFPQHHY
HHHHQQQHYQCYTPPGSPPLQKQIQSKVQEQQQQKQQQSPGILDKSGGSS
SCSDSENSKGGKKIRSYRTKRRGLLRTATNNTRNKFPSEKQQLRQQHQQQ
NQPKWNGFPRMPLFSTTDYAGKAYTFYRPDDYQDVICYPTRFFFHCPQPP
LALPAREMERRGLPYGPTYGPLAPWHFPYERPQPVAAEGK* back to topmRNA from alignment at scaffold_141:22970..25785- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_12283 ID=mRNA_12283|Name=jgi.p|Nanoce1779_2|675711|organism=Nannochloropsis oceanica|type=mRNA|length=2816bp|location=Sequence derived from alignment at scaffold_141:22970..25785- (Nannochloropsis oceanica)
CACCACCAGAATTACTGCATCCAAGTCGGGGAAACCATCAATCTTCAGGC
CTACGATCTGCCATTCACGATGCCGCATGATGACTTTGCGTACCATCACG
GACAGGCCAGGCACGGCAACAGCATGTCTCTTCACCCCTACGAGCCGCAG
CACCAGCAGCAGCAGGTCCAGCTGCAGCAGCAATTTGGGGGATACAGCTC
CCCCAACAGCAGCGACGAGGGGAGTTTGAAAGGAGACTACAGCTGTCAGG
GCGGGGCAGGGGACTATATGAGTGTCAGTGGAGAACAGACAAACTACTAT
TCTGGCTCCTCCTACCCCTATCACCACGAGCAACACGAGCAGCCCCCCGA
CCCGCACTACGATGGACCTCTCCCTCCCCCTTACTTTGCATTTAGGTACA
CCACGATGGCGACTGGCATTACCTATCATAGATACATGCCCTCCTCCTCC
TACGACTCGCAGGCATCGTACTCTCCCTTCTATGGGAACCCGCAGCCTCA
TGGCGGCAATACGGAGGCGAGCACTTCCCCTCACTATTACCAGCAGCAGC
AGTTGCAGGAGGGGATGAGAGGAGGAATTGAGGGAGGAATGAACCGCAGC
AACTTCAATCCTCCCCACCCTGACATGATAATGACGGCGGTGATACAGCA
AGGCAGCAGTAATAGCAAGTGTAAATATAGTAATGGCACGGATGAGGACA
TGAAGGCAATGGAGCAACACAAGCGAGGAATTGTGGAGCAGACGAGAGAG
AGAGGGTCGGAGAAGGAAACGCGAGAGGAGGTATTGTCTAATGGCGTGAG
AAAAATCACACGTGGTGAATTGACGCACTATATCTATCCCGAGGATGTGG
CGCGGATGACTCAGGAGGAGATCATGATGGAGATGTCTGCCTCCAGCCAT
ATCCTCAATGCTAACCTGCCCTTAGAGAGGCAGCAGCACCATCCTCAGCA
GTTTCCGCAGCATCACTACCACCACCACCACCAGCAGCAGCACTATCAAT
GCTACACCCCACCGGGCTCGCCCCCGGTACAGCCCTATCAAAACATCTCT
CCGCCCTACTCCCCCGTGACCACCCCACCCGTTATGCAGTATGAGAAGCA
TTTTTTGGGAAAAAGATCCCATCCCCAAAGTCCCCAGGACGAGGAGCAGC
AAGTACCCACCCACTATAACGGGCCTCCTTCCCCGCTTACACCTGCACCT
TGCTCTCCCCCTTCCTATCCGATGGATACCACGCTTTTCAACGATCAAAT
CCTGCCCCACAGTCACCAATCACACCGCCAGCTTCAAAAACAGATTCAGT
CGAAGGTACAAGAGCAGCAGCAGCAGAAGCAGCAGCAGTCGCCCGGAATG
TTCAAGACCAAGAGCCCCCCTCCCATCCTCCCCGCTATTACCGAGGGAAA
TTCTATGTGTCCCTCTCTCCCTCCCTGTTGTAACAGTTTAGATAAGAGTG
GGGGCAGCAGCAGTTGTAGTGACAGTGAGAACAGCAAGGGAGGCAAGAAG
ATCAGGAGCTACCGCACCAAGAGGAGAGGGCTGCTCCGCACCGCCACCAA
CAACACCCGCAACAAGTTTCCCAGCGAAAAACAGCAGCTAAGACAGCAGC
ACCAGCAGCAGAACCAGCCCAAGTGGAACGGTTTCCCCCGCATGCCTCTC
TTCTCGACCACAGACTACGCGGGGAAGGCCTACACATTCTACCGACCGGA
TGACTACCAGGACGTCATTTGCTACCCCACCCGTTTCTTCTTCCACTGCC
CCCAGCCTCCCCTTGCCCTTCCGGCCCGGGAAATGGAGCGCCGCGGCCTG
CCGTACGGGCCAACCTATGGACCATTGGCGCCATGGCATTTCCCTTATGA
GCGACCACAGCCGGTGGCGGCGGAAGGGAAGTGAGAGAGGGAAAGAGAAG
GGATGGTGGTGGATTGCGTTTATGTCTCAACAGAGATGAACAGGAACGGA
CTGGGGGGATCTAAGAGCCTGTGCATAAAAGAGATAGGAAAATATGAATC
TGTATACACAAATATGAGCACCGACAGAGGAAAAGGAAAAATAAATGGAT
AGAACAAGAGTTTATAAAATAATCACTCAGACAAGTTGTATTTTAAGGAA
AAGATTTGCACTAGGCATGAACCGAAGGCAATCAGCAAAAAATGCAGAAC
CGACCAGACGAAATCAGCAGAGACAATATAAAGTTTGAGAATTAGGGAGG
AATAAAGGACGTAAGGTAGTTTTTATACTCTAAAATATCGACTTTCGAGA
GTGCGGCGACCCAGATAGGAAATTAAAAAAGAGTAGAGTGAAAAAAGACG
AAGGAACAAAGCAGAGAAGAGGACGTAAAAATTTTATCCATGCATGTAAT
TGATTGGTACAAATTTGGACTACTAGCGAGTAAAAATACATTACTGAAAA
GCCGGAAATGTGTTGTGAAAACAAAGCTAAAAATATAACGACAAGCGACT
GGCCCGTTCCGACAGAAAGCAAGCAAGAAGCATCATATTGACAGTGGTAG
TGAGAGATATGGAAAGAAAAGATAAAATTCACGAAGATAACAAGGACTAT
CAGAGTCTGATTGAAGGGGCAATTTGTGCAGAATACGAGAAAAAAAGGCA
GTCATTTACTCGCCTTAATACCCACTCGGGCAATCTCAAAGAGATGGTAG
AAAATAGAGGGAAAAGAGAGCGTCATTCACCAAATGGAGGGCTATAGAAA
GTGCAGCCAGCTTGTCGATCGAGATAGAGGAAGAGGAAAATATAGAGCGA
GAGTAGTAGAGTGAGTACGCATCTATCCACACACAAATTTACGCACATAT
CCATGTTCACTTGTGC back to topCoding sequence (CDS) from alignment at scaffold_141:22970..25785- >mRNA_12283 ID=mRNA_12283|Name=jgi.p|Nanoce1779_2|675711|organism=Nannochloropsis oceanica|type=CDS|length=4419bp|location=Sequence derived from alignment at scaffold_141:22970..25785- (Nannochloropsis oceanica)
TTTAGATAAGAGTGGGGGCAGCAGCAGTTGTAGTGACAGTGAGAACAGCA
AGGGAGGCAAGAAGATCAGGAGCTACCGCACCAAGAGGAGAGGGCTGCTC
CGCACCGCCACCAACAACACCCGCAACAAGTTTCCCAGCGAAAAACAGCA
GCTAAGACAGCAGCACCAGCAGCAGAACCAGCCCAAGTGGAACGGTTTCC
CCCGCATGCCTCTCTTCTCGACCACAGACTACGCGGGGAAGGCCTACACA
TTCTACCGACCGGATGACTACCAGGACGTCATTTGCTACCCCACCCGTTT
CTTCTTCCACTGCCCCCAGCCTCCCCTTGCCCTTCCGGCCCGGGAAATGG
AGCGCCGCGGCCTGCCGTACGGGCCAACCTATGGACCATTGGCGCCATGG
CATTTCCCTTATGAGCGACCACAGCCGGTGGCGGCGGAAGGGAAGTGACT
TCAAAAACAGATTCAGTCGAAGGTACAAGAGCAGCAGCAGCAGAAGCAGC
AGCAGTCGCCCGGAATATGCCGCATGATGACTTTGCGTACCATCACGGAC
AGGCCAGGCACGGCAACAGCATGTCTCTTCACCCCTACGAGCCGCAGCAC
CAGCAGCAGCAGGTCCAGCTGCAGCAGCAATTTGGGGGATACAGCTCCCC
CAACAGCAGCGACGAGGGGAGTTTGAAAGGAGACTACAGCTGTCAGGGCG
GGGCAGGGGACTATATGAGTGTCAGTGGAGAACAGACAAACTACTATTCT
GGCTCCTCCTACCCCTATCACCACGAGCAACACGAGCAGCCCCCCGACCC
GCACTACGATGGACCTCTCCCTCCCCCTTACTTTGCATTTAGGTACACCA
CGATGGCGACTGGCATTACCTATCATAGATACATGCCCTCCTCCTCCTAC
GACTCGCAGGCATCGTACTCTCCCTTCTATGGGAACCCGCAGCCTCATGG
CGGCAATACGGAGGCGAGCACTTCCCCTCACTATTACCAGCAGCAGCAGT
TGCAGGAGGGGATGAGAGGAGGAATTGAGGGAGGAATGAACCGCAGCAAC
TTCAATCCTCCCCACCCTGACATGATAATGACGGCGGTGATACAGCAAGG
CAGCAGTAATAGCAAGTGTAAATATAGTAATGGCACGGATGAGGACATGA
AGGCAATGGAGCAACACAAGCGAGGAATTGTGGAGCAGACGAGAGAGAGA
GGGTCGGAGAAGGAAACGCGAGAGGAGGTATTGTCTAATGGCGTGAGAAA
AATCACACGTGGTGAATTGACGCACTATATCTATCCCGAGGATGTGGCGC
GGATGACTCAGGAGGAGATCATGATGGAGATGTCTGCCTCCAGCCATATC
CTCAATGCTAACCTGCCCTTAGAGAGGCAGCAGCACCATCCTCAGCAGTT
TCCGCAGCATCACTACCACCACCACCACCAGCAGCAGCACTATCAATGCT
ACACCCCACCGGGCTCGCCCCCGTTTAGATAAGAGTGGGGGCAGCAGCAG
TTGTAGTGACAGTGAGAACAGCAAGGGAGGCAAGAAGATCAGGAGCTACC
GCACCAAGAGGAGAGGGCTGCTCCGCACCGCCACCAACAACACCCGCAAC
AAGTTTCCCAGCGAAAAACAGCAGCTAAGACAGCAGCACCAGCAGCAGAA
CCAGCCCAAGTGGAACGGTTTCCCCCGCATGCCTCTCTTCTCGACCACAG
ACTACGCGGGGAAGGCCTACACATTCTACCGACCGGATGACTACCAGGAC
GTCATTTGCTACCCCACCCGTTTCTTCTTCCACTGCCCCCAGCCTCCCCT
TGCCCTTCCGGCCCGGGAAATGGAGCGCCGCGGCCTGCCGTACGGGCCAA
CCTATGGACCATTGGCGCCATGGCATTTCCCTTATGAGCGACCACAGCCG
GTGGCGGCGGAAGGGAAGTGACTTCAAAAACAGATTCAGTCGAAGGTACA
AGAGCAGCAGCAGCAGAAGCAGCAGCAGTCGCCCGGAATATGCCGCATGA
TGACTTTGCGTACCATCACGGACAGGCCAGGCACGGCAACAGCATGTCTC
TTCACCCCTACGAGCCGCAGCACCAGCAGCAGCAGGTCCAGCTGCAGCAG
CAATTTGGGGGATACAGCTCCCCCAACAGCAGCGACGAGGGGAGTTTGAA
AGGAGACTACAGCTGTCAGGGCGGGGCAGGGGACTATATGAGTGTCAGTG
GAGAACAGACAAACTACTATTCTGGCTCCTCCTACCCCTATCACCACGAG
CAACACGAGCAGCCCCCCGACCCGCACTACGATGGACCTCTCCCTCCCCC
TTACTTTGCATTTAGGTACACCACGATGGCGACTGGCATTACCTATCATA
GATACATGCCCTCCTCCTCCTACGACTCGCAGGCATCGTACTCTCCCTTC
TATGGGAACCCGCAGCCTCATGGCGGCAATACGGAGGCGAGCACTTCCCC
TCACTATTACCAGCAGCAGCAGTTGCAGGAGGGGATGAGAGGAGGAATTG
AGGGAGGAATGAACCGCAGCAACTTCAATCCTCCCCACCCTGACATGATA
ATGACGGCGGTGATACAGCAAGGCAGCAGTAATAGCAAGTGTAAATATAG
TAATGGCACGGATGAGGACATGAAGGCAATGGAGCAACACAAGCGAGGAA
TTGTGGAGCAGACGAGAGAGAGAGGGTCGGAGAAGGAAACGCGAGAGGAG
GTATTGTCTAATGGCGTGAGAAAAATCACACGTGGTGAATTGACGCACTA
TATCTATCCCGAGGATGTGGCGCGGATGACTCAGGAGGAGATCATGATGG
AGATGTCTGCCTCCAGCCATATCCTCAATGCTAACCTGCCCTTAGAGAGG
CAGCAGCACCATCCTCAGCAGTTTCCGCAGCATCACTACCACCACCACCA
CCAGCAGCAGCACTATCAATGCTACACCCCACCGGGCTCGCCCCCGTTTA
GATAAGAGTGGGGGCAGCAGCAGTTGTAGTGACAGTGAGAACAGCAAGGG
AGGCAAGAAGATCAGGAGCTACCGCACCAAGAGGAGAGGGCTGCTCCGCA
CCGCCACCAACAACACCCGCAACAAGTTTCCCAGCGAAAAACAGCAGCTA
AGACAGCAGCACCAGCAGCAGAACCAGCCCAAGTGGAACGGTTTCCCCCG
CATGCCTCTCTTCTCGACCACAGACTACGCGGGGAAGGCCTACACATTCT
ACCGACCGGATGACTACCAGGACGTCATTTGCTACCCCACCCGTTTCTTC
TTCCACTGCCCCCAGCCTCCCCTTGCCCTTCCGGCCCGGGAAATGGAGCG
CCGCGGCCTGCCGTACGGGCCAACCTATGGACCATTGGCGCCATGGCATT
TCCCTTATGAGCGACCACAGCCGGTGGCGGCGGAAGGGAAGTGACTTCAA
AAACAGATTCAGTCGAAGGTACAAGAGCAGCAGCAGCAGAAGCAGCAGCA
GTCGCCCGGAATATGCCGCATGATGACTTTGCGTACCATCACGGACAGGC
CAGGCACGGCAACAGCATGTCTCTTCACCCCTACGAGCCGCAGCACCAGC
AGCAGCAGGTCCAGCTGCAGCAGCAATTTGGGGGATACAGCTCCCCCAAC
AGCAGCGACGAGGGGAGTTTGAAAGGAGACTACAGCTGTCAGGGCGGGGC
AGGGGACTATATGAGTGTCAGTGGAGAACAGACAAACTACTATTCTGGCT
CCTCCTACCCCTATCACCACGAGCAACACGAGCAGCCCCCCGACCCGCAC
TACGATGGACCTCTCCCTCCCCCTTACTTTGCATTTAGGTACACCACGAT
GGCGACTGGCATTACCTATCATAGATACATGCCCTCCTCCTCCTACGACT
CGCAGGCATCGTACTCTCCCTTCTATGGGAACCCGCAGCCTCATGGCGGC
AATACGGAGGCGAGCACTTCCCCTCACTATTACCAGCAGCAGCAGTTGCA
GGAGGGGATGAGAGGAGGAATTGAGGGAGGAATGAACCGCAGCAACTTCA
ATCCTCCCCACCCTGACATGATAATGACGGCGGTGATACAGCAAGGCAGC
AGTAATAGCAAGTGTAAATATAGTAATGGCACGGATGAGGACATGAAGGC
AATGGAGCAACACAAGCGAGGAATTGTGGAGCAGACGAGAGAGAGAGGGT
CGGAGAAGGAAACGCGAGAGGAGGTATTGTCTAATGGCGTGAGAAAAATC
ACACGTGGTGAATTGACGCACTATATCTATCCCGAGGATGTGGCGCGGAT
GACTCAGGAGGAGATCATGATGGAGATGTCTGCCTCCAGCCATATCCTCA
ATGCTAACCTGCCCTTAGAGAGGCAGCAGCACCATCCTCAGCAGTTTCCG
CAGCATCACTACCACCACCACCACCAGCAGCAGCACTATCAATGCTACAC
CCCACCGGGCTCGCCCCCG back to top
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