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Properties
| Property Name | Value |
|---|
| TranscriptId | 617678 |
| Track | FilteredModels2 |
| ProteinId | 617592 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_141 | supercontig | scaffold_141:693..2215 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_12278 ID=mRNA_12278|Name=jgi.p|Nanoce1779_2|617592|organism=Nannochloropsis oceanica|type=mRNA|length=575bp
AACAGTAGGCAAGCCGGGCACTTACGTTCATCTCCCCACCACCAGAAGAG
GTCAATCCTGAACTCCGACCCTGCAGCTGCTCTACCGAGCGAAGATCCCT
AAATTGTGCCACTGAAATGGAAATCCTTTCCACTAACGACGGCCTTCTCA
CGGATCTGGATGCCTACCAACTAATCAAAGAGCGGATGTCCAAACGCGCC
GCGGAGAAAAAAGAAAAAGGGAAAAAGGCAGAAAAAGGAGCCGGGGGTCG
GTCACAGAAGGCTCTCTTTCCTCACGGCCCCTCCAATTCCGTATCCTGCC
CTCCGTCCACCCTCCCCCCTCCTCCGTCCCTCCCTTCACCTCCATCCTCC
ACCACTATCACCACCACCACCTCCCCCTCCCCCATTTTCACCCTCGCCGA
GACGTTACAACTCATAAATCTTCGGCCCGTAGCACCCGTGGAGGTACATT
TGATCATCGAGGAGTGCGTCGAGCGTCTGAGCGACGAGGAGGTAGAACGG
TTGTGCGAGCTGGTGGCCATCTATCTTGGCGGGGGCAGGGGGAGAAGCAG
GCAAGAGGAGAAGGAGGGGGGGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|617592 >mRNA_12278-protein ID=mRNA_12278-protein|Name=jgi.p|Nanoce1779_2|617592|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MEILSTNDGLLTDLDAYQLIKERMSKRAAEKKEKGKKAEKGAGGRSQKAL
FPHGPSNSVSCPPSTLPPPPSLPSPPSSTTITTTTSPSPIFTLAETLQLI
NLRPVAPVEVHLIIEECVERLSDEEVERLCELVAIYLGGGRGRSRQEEKE
GG* back to topmRNA from alignment at scaffold_141:693..2215- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_12278 ID=mRNA_12278|Name=jgi.p|Nanoce1779_2|617592|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp|location=Sequence derived from alignment at scaffold_141:693..2215- (Nannochloropsis oceanica)
AACAGTAGGCAAGCCGGGCACTTACGTTCATCTCCCCACCACCAGAAGAG
GTCAATCCTGAACTCCGACCCTGCAGCTGCTCTACCGAGCGAAGATCCCT
AAATTGTGCCACTGAAATGGAAATGTACGTATGTGCACGTGGCGCTCTTC
CCTCTCGTGAGGTCGAAACTCTCCTTTTGGAGACGCCTCCCTTCCCTCCA
TCTCTCCCTCCCTCCCCGTTCCTATCACCTAGTCCATGTCCCTCCCCAAT
TCCCTCTCCCCCCTTGCCGTCGCTTACTGTCATTACCTTCTTTCCCTTGT
TCTATCCCCTCGCCCTCCTGCGATGGCCCCATCCTTCCCTCCCTAGCCTT
TCCACTAACGACGGCCTTCTCACGGATCTGGATGCCTACCAACTAATCAA
AGAGCGGATGTCCAAACGCGCCGCGGAGAAAAAAGAAAAAGGGAAAAAGG
CAGAAAAAGGAGCCGGGGGTCGGTCACAGAAGGCGTTGACCAAAAACAGG
GACTGGATCGAGAAGGAGGTGGGAAGGAGGGAGGAAGGGAAGGATGGATG
GAGGGACAGGAGCACTGGAGGGGAGGGAGAGCAAGTGAGGGGTGAGGTGA
TGGCTGACGATGTCCTTTTTCCCTTACCCTGAATCTCCTTGTATCCCCCC
TTCCTCTCTTTCTCCCACCCTTTCTTTCTCACGCAACAGATCATAAGACA
GCTGTCGGAATTGCCCGCTGGAGGAGAGACCGAAGAAGGAGTCAAGGTAC
GCAGGCAGGCGCTTGCCCTCCCACCTTCTCTCCTTCCCTCCTTCCCTTCC
CCCCGCCCGCTTTCCACATGCACCACCCTGAGCTTGTCTAATGTCTGGAT
CTCTCATAAAAATGCTCCCATTTCACAACGACCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTTCCTCATCCATCCATCCTTCCCCATCCCTCC
GTACCACCCCTCCCTCACTCCCTCCCCCCTCCTCCCTCCCTCCCTCCCTC
CCTCCTCAGTCTCTTTCCTCACGGCCCCTCCAATTCCGTATCCTGCCCTC
CGTCCACCCTCCCCCCTCCTCCGTCCCTCCCTTCACCTCCATCCTCCACC
ACTATCACCACCACCACCTCCCCCTCCCCCATTTTCACCCTCGCCGAGAC
GTTACAACTCATAAATCTTCGGCCCGTAGCACCCGTGGAGGTACATTTGG
TAGGTACGTAGGGAGGGAGGGAAGGGGTAGGGAGGTAGGATGGGAGGGAG
AGGGGTAGGGACTTATGCTGAAAAGTTGTGACTGTCGTCTGGTTTAATTT
TCATCTGTTGATGACCTTATCCACCCTTCCTCCTTCCTTCTTTCCCACCT
CTCCCTCCCTCCCTCCCTCGCTCCCTCCCTCCCTCTCCTTCCGTCTCCAG
ATCATCGAGGAGTGCGTCGAGCGTCTGAGCGACGAGGAGGTAGAACGGTT
GTGCGAGCTGGTGGCCATCTATCTTGGCGGGGGCAGGGGGAGAAGCAGGC
AAGAGGAGAAGGAGGGGGGGTGA back to topCoding sequence (CDS) from alignment at scaffold_141:693..2215- >mRNA_12278 ID=mRNA_12278|Name=jgi.p|Nanoce1779_2|617592|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_141:693..2215- (Nannochloropsis oceanica)
ATCATCGAGGAGTGCGTCGAGCGTCTGAGCGACGAGGAGGTAGAACGGTT
GTGCGAGCTGGTGGCCATCTATCTTGGCGGGGGCAGGGGGAGAAGCAGGC
AAGAGGAGAAGGAGGGGGGGTGATCTCTTTCCTCACGGCCCCTCCAATTC
CGTATCCTGCCCTCCGTCCACCCTCCCCCCTCCTCCGTCCCTCCCTTCAC
CTCCATCCTCCACCACTATCACCACCACCACCTCCCCCTCCCCCATTTTC
ACCCTCGCCGAGACGTTACAACTCATAAATCTTCGGCCCGTAGCACCCGT
GGAGGTACATTTGCCTTTCCACTAACGACGGCCTTCTCACGGATCTGGAT
GCCTACCAACTAATCAAAGAGCGGATGTCCAAACGCGCCGCGGAGAAAAA
AGAAAAAGGGAAAAAGGCAGAAAAAGGAGCCGGGGGTCGGTCACAGAAGG
CATGGAAATATCATCGAGGAGTGCGTCGAGCGTCTGAGCGACGAGGAGGT
AGAACGGTTGTGCGAGCTGGTGGCCATCTATCTTGGCGGGGGCAGGGGGA
GAAGCAGGCAAGAGGAGAAGGAGGGGGGGTGATCTCTTTCCTCACGGCCC
CTCCAATTCCGTATCCTGCCCTCCGTCCACCCTCCCCCCTCCTCCGTCCC
TCCCTTCACCTCCATCCTCCACCACTATCACCACCACCACCTCCCCCTCC
CCCATTTTCACCCTCGCCGAGACGTTACAACTCATAAATCTTCGGCCCGT
AGCACCCGTGGAGGTACATTTGCCTTTCCACTAACGACGGCCTTCTCACG
GATCTGGATGCCTACCAACTAATCAAAGAGCGGATGTCCAAACGCGCCGC
GGAGAAAAAAGAAAAAGGGAAAAAGGCAGAAAAAGGAGCCGGGGGTCGGT
CACAGAAGGCATGGAAATATCATCGAGGAGTGCGTCGAGCGTCTGAGCGA
CGAGGAGGTAGAACGGTTGTGCGAGCTGGTGGCCATCTATCTTGGCGGGG
GCAGGGGGAGAAGCAGGCAAGAGGAGAAGGAGGGGGGGTGATCTCTTTCC
TCACGGCCCCTCCAATTCCGTATCCTGCCCTCCGTCCACCCTCCCCCCTC
CTCCGTCCCTCCCTTCACCTCCATCCTCCACCACTATCACCACCACCACC
TCCCCCTCCCCCATTTTCACCCTCGCCGAGACGTTACAACTCATAAATCT
TCGGCCCGTAGCACCCGTGGAGGTACATTTGCCTTTCCACTAACGACGGC
CTTCTCACGGATCTGGATGCCTACCAACTAATCAAAGAGCGGATGTCCAA
ACGCGCCGCGGAGAAAAAAGAAAAAGGGAAAAAGGCAGAAAAAGGAGCCG
GGGGTCGGTCACAGAAGGCATGGAAATATCATCGAGGAGTGCGTCGAGCG
TCTGAGCGACGAGGAGGTAGAACGGTTGTGCGAGCTGGTGGCCATCTATC
TTGGCGGGGGCAGGGGGAGAAGCAGGCAAGAGGAGAAGGAGGGGGGGTGA
TCTCTTTCCTCACGGCCCCTCCAATTCCGTATCCTGCCCTCCGTCCACCC
TCCCCCCTCCTCCGTCCCTCCCTTCACCTCCATCCTCCACCACTATCACC
ACCACCACCTCCCCCTCCCCCATTTTCACCCTCGCCGAGACGTTACAACT
CATAAATCTTCGGCCCGTAGCACCCGTGGAGGTACATTTGCCTTTCCACT
AACGACGGCCTTCTCACGGATCTGGATGCCTACCAACTAATCAAAGAGCG
GATGTCCAAACGCGCCGCGGAGAAAAAAGAAAAAGGGAAAAAGGCAGAAA
AAGGAGCCGGGGGTCGGTCACAGAAGGCATGGAAAT back to top
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