jgi.p|Nanoce1779_2|634911, mRNA_12282 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|634911
Unique NamemRNA_12282
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length463
Alignment locationscaffold_141:10614..11397 +

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Properties
Property NameValue
TranscriptId634997
TrackFilteredModels2
ProteinId634911
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:10614..11397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634911gene_12282Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634911mRNA_12282-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12282CDS_12282Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12282 ID=mRNA_12282|Name=jgi.p|Nanoce1779_2|634911|organism=Nannochloropsis oceanica|type=mRNA|length=463bp
CCGAGAGCAATAGTCATGAGAAGATGAAAGCCCGGACTGCTGTCTTGCTG
AAGCAACAAAATGCGAGTTCACTCATGGCCATCATTCTACACTCTCAAAC
TACCTGGGAAGGGTAAGGACGAGCAGGACGATGACCCTGCCTAGTGGCGA
AGAGGAGGAAGAGGAGGAGGAGCAGGAGAAAGAGGTGCATAAGACGAGCG
CGATGCATACTGCAGCGGCAGCGCAGCAATGGGAGGAAAGTATGAAGCAC
CTCAAGCATGCGCTAAACCAGTGCGATGAAGAGACCAAGAGGTTTCTGGC
TCCTATAATCAAGCATCCGGCGGCTCAGCAGATCCTTGTCTCCTTTCTCT
CGGACTCATGCCGGTCCTTCCAGGATTGGGTGTGGGAACCGCGAGCCCAC
GAGGTCCTCGCCCGCTTCCGCTCCACCCTGCTCGAGCGAGCCGCTCAAGG
TCTGTTGTCTTGA
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protein sequence of jgi.p|Nanoce1779_2|634911

>mRNA_12282-protein ID=mRNA_12282-protein|Name=jgi.p|Nanoce1779_2|634911|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MTLPSGEEEEEEEEQEKEVHKTSAMHTAAAAQQWEESMKHLKHALNQCDE
ETKRFLAPIIKHPAAQQILVSFLSDSCRSFQDWVWEPRAHEVLARFRSTL
LERAAQGLLS*
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mRNA from alignment at scaffold_141:10614..11397+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12282 ID=mRNA_12282|Name=jgi.p|Nanoce1779_2|634911|organism=Nannochloropsis oceanica|type=mRNA|length=784bp|location=Sequence derived from alignment at scaffold_141:10614..11397+ (Nannochloropsis oceanica)
CCGAGAGCAATAGTCATGAGAAGATGAAAGCCCGGACTGCTGTCTTGCTG
AAGCAACAAAATGCGAGTTCACTCATGGCCATCATTCTACACTCTCAAAC
TACCTGGGAAGGGTAAGGACGAGCAGGACGATGACCCTGCCTAGTGGCGA
AGAGGAGGAAGAGGAGGAGGAGCAGGAGAAAGAGGTGCATAAGACGAGCG
CGATGCATACTGCAGCGGCAGCGCAGCAATGGGAGGAAAGTATGAAGCAC
CTCAAGCATGCGCTAAACCAGTGCGATGAAGAGACCAAGGTAAGTGAGCA
CTGGGTAAAGGAGAGGAAGGATATAGAGAATAGAATGCAAAGTACTGACA
GAGGCGCACGTCGTGGCAGGAAAGCTAGCAAACAGGCTGGAATAAAACCC
CATGGCACGTGCCTTTTCTGATCCCGCATTTCCTCCTTTCCTTTCCCTCC
TCTCTTTCATCTCTCCTCTTCTTACAGAGGTTTCTGGCTCCTATAATCAA
GCATCCGGCGGCTCAGCAGATCCTTGTCTCCTTTCTCTCGGACTCATGCC
GGTGAGTCCCGCCAGCGAGGAAGGGAGGGAGGAATTCTCTAAATATTGGT
TCGCGGTGCGCGACACTCCTCTTCGCTCATAAACTGTACCAAATCACTCA
CCACAACCCCTCCTCCTCACCGTCTTCTATCCAGGTCCTTCCAGGATTGG
GTGTGGGAACCGCGAGCCCACGAGGTCCTCGCCCGCTTCCGCTCCACCCT
GCTCGAGCGAGCCGCTCAAGGTCTGTTGTCTTGA
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Coding sequence (CDS) from alignment at scaffold_141:10614..11397+

>mRNA_12282 ID=mRNA_12282|Name=jgi.p|Nanoce1779_2|634911|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at scaffold_141:10614..11397+ (Nannochloropsis oceanica)
ATGACCCTGCCTAGTGGCGAAGAGGAGGAAGAGGAGGAGGAGCAGGAGAA
AGAGGTGCATAAGACGAGCGCGATGCATACTGCAGCGGCAGCGCAGCAAT
GGGAGGAAAGTATGAAGCACCTCAAGCATGCGCTAAACCAGTGCGATGAA
GAGACCAAGAGGTTTCTGGCTCCTATAATCAAGCATCCGGCGGCTCAGCA
GATCCTTGTCTCCTTTCTCTCGGACTCATGCCGGTCCTTCCAGGATTGGG
TGTGGGAACCGCGAGCCCACGAGGTCCTCGCCCGCTTCCGCTCCACCCTG
CTCGAGCGAGCCGCTCAAGGTCTGTTGTCTTGAATGACCCTGCCTAGTGG
CGAAGAGGAGGAAGAGGAGGAGGAGCAGGAGAAAGAGGTGCATAAGACGA
GCGCGATGCATACTGCAGCGGCAGCGCAGCAATGGGAGGAAAGTATGAAG
CACCTCAAGCATGCGCTAAACCAGTGCGATGAAGAGACCAAGAGGTTTCT
GGCTCCTATAATCAAGCATCCGGCGGCTCAGCAGATCCTTGTCTCCTTTC
TCTCGGACTCATGCCGGTCCTTCCAGGATTGGGTGTGGGAACCGCGAGCC
CACGAGGTCCTCGCCCGCTTCCGCTCCACCCTGCTCGAGCGAGCCGCTCA
AGGTCTGTTGTCTTGAATGACCCTGCCTAGTGGCGAAGAGGAGGAAGAGG
AGGAGGAGCAGGAGAAAGAGGTGCATAAGACGAGCGCGATGCATACTGCA
GCGGCAGCGCAGCAATGGGAGGAAAGTATGAAGCACCTCAAGCATGCGCT
AAACCAGTGCGATGAAGAGACCAAGAGGTTTCTGGCTCCTATAATCAAGC
ATCCGGCGGCTCAGCAGATCCTTGTCTCCTTTCTCTCGGACTCATGCCGG
TCCTTCCAGGATTGGGTGTGGGAACCGCGAGCCCACGAGGTCCTCGCCCG
CTTCCGCTCCACCCTGCTCGAGCGAGCCGCTCAAGGTCTGTTGTCTTGA
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Synonyms
Publications