jgi.p|Nanoce1779_2|617625, mRNA_12285 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|617625
Unique NamemRNA_12285
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1784
Alignment locationscaffold_141:30539..32424 +

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Properties
Property NameValue
TranscriptId617711
TrackFilteredModels2
ProteinId617625
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_141supercontigscaffold_141:30539..32424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617625gene_12285Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617625mRNA_12285-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12285CDS_12285Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12285 ID=mRNA_12285|Name=jgi.p|Nanoce1779_2|617625|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp
GTGGCGTGGGGCATCTGGCCTCGGGATTCCGTGGAGATCTTGGGCGGGGC
GGAGAAAGAGGAAGGAGTGTATTACAGTACGGCTTCTCAGAGGGGGAGCA
ATTCCCGCCTCTGAACCGTATCATGCAGGCAACGACGGAGCATGTGGGAG
AGGGACTCTTGGCCGGACTGGAGCAAACGCTCAGCACACTGGCCTTCGAG
GATGGTACGGCGGAAGAGTTGGAGAAGGACACGGACCTGATGGTCTTCCT
GGCCAAGTTTATCATGCCCTTACGGTTCCGGTACGAAGGGCCCTCTGATT
CACGCCGAGACGCAGCACGCTTTTCAATGGACGGGCCGGGCGCGAGGGAC
GGACTCTTCAACCTCACCGACCTCCAAAGTACGCCACTTTTTCTAAGCAC
CCCGCACTACATGGGCTATCCGCAGCTCAAATCGTTGGAGTGTTTGAGTG
TCATTGCCTACGATCCAGTCGGCGAGCAAGACGCTGCCATGGGGAGTCAT
CTGGATATAGATCCCTACACGGGAAGGACAATGTCAGCAGCGGTTCGTAT
GCAGCTGTCAACCTCAACAGCAGGTGGGAACAAGGTCTATGATGTGTTCC
ATGACAAAGCTTACGCTGCTGAGGTTATTCCACTACTGTGGATGACGCAG
CAGGCAGAAGTGGGGCCAGCGGACGCGGTATTATTCAAGAAGCTGTATAC
CTTGCTGGTAGGGATTGTGTTGACGGTGTTGGGTCTGGTAATGGTAGTGG
CCGGCTGTTTCTTTGCTCGCAGAAAGCGAAGTGAAGAGAAGACTGCAGAT
TCTCGGGGATGCACCATTAATATTCTTTGAGTTTGACACCACACCAACGC
AACGAAGGCCATAAAATGAATAATACAAGAGAGTCAATTTGTGAAATCGA
TTCCCATTTTAGTGCTGTGCAAGTGCTTGTGAAGATGTGTGTGGGCGCAA
GTGTGAGCAGAATGCAAAAGAGGGACACTTCCAGGGAAAAACACGAAAGA
GATTTGCTTTTAAGTTTGAGACGCGACCAAATAATTGAATCGTAAATTAT
TTTTGTAATTATTGTAATTTGGTTGTGACAGGTAACGACTATGCCAATAC
GAACAACTGGGAGGAACAAAGGCCGGAAGCTTCTCGCTAATTAGAAGCAG
AAATAGGACACCTTGCATGATAAACCTAAAATACAGCTTCTACGTTTTTT
TGACTCGAGAATTTGATCACGCAGCCAACGTCCATATCTTCATTATGTTC
TGGCGGTCGCCGCTTCATAGAATCTTCTCTCTAAGTTCCTCTTCCTCCTC
CACATCCTCATTCTCTTCCCCTCCTTCCATAAGGGTAGGTTGGGAAAGTC
TGTGACGCACAAGTCTACAAAAGCTGACTTGACTACTTTATCCTCTTTCT
CTCTCTCGCTCCTCGTTTTGGCTTTCCACCTGCTTCTCCTCTTCCCCTTC
ATCTCCCTTCTCCTCCTCCTTTCTCTTCCACGATACAAGGGTCTCTCTCA
TCCAGGGCAACAATGGGAGGATGCAATCACTCTCATCCTTCTCCTTCTCG
CTCGCCAATGTCCTCTCTTCGTAGCTCCTCAATCTATTTCCAACCAACAA
CACATTCTGTAGGCAATCGGGTGACCAATTGGCCCATAAGAGATTACTGT
AAAGACGACGATGACAGCAGGGCATAAAAAAGACTGTCGGTGTGAGGGCC
CGGCGTTTGCCGTGTTCGTTGTGAGGGAGGACGTGCCACCCGAGAAGGGT
CAGGAGATGAGTGTCCAAGCCATCAAACAAGGGG
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protein sequence of jgi.p|Nanoce1779_2|617625

>mRNA_12285-protein ID=mRNA_12285-protein|Name=jgi.p|Nanoce1779_2|617625|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MQATTEHVGEGLLAGLEQTLSTLAFEDGTAEELEKDTDLMVFLAKFIMPL
RFRYEGPSDSRRDAARFSMDGPGARDGLFNLTDLQSTPLFLSTPHYMGYP
QLKSLECLSVIAYDPVGEQDAAMGSHLDIDPYTGRTMSAAVRMQLSTSTA
GGNKVYDVFHDKAYAAEVIPLLWMTQQAEVGPADAVLFKKLYTLLVGIVL
TVLGLVMVVAGCFFARRKRSEEKTADSRGCTINIL*
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mRNA from alignment at scaffold_141:30539..32424+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12285 ID=mRNA_12285|Name=jgi.p|Nanoce1779_2|617625|organism=Nannochloropsis oceanica|type=mRNA|length=1886bp|location=Sequence derived from alignment at scaffold_141:30539..32424+ (Nannochloropsis oceanica)
GTGGCGTGGGGCATCTGGCCTCGGGATTCCGTGGAGATCTTGGGCGGGGC
GGAGAAAGAGGAAGGAGTGTATTACAGTACGGCTTCTCAGAGGGGGAGCA
ATTCCCGCCTCTGAACCGTATCATGCAGGCAACGACGGAGCATGTGGGAG
AGGGACTCTTGGCCGGACTGGAGCAAACGCTCAGCACACTGGCCTTCGAG
GATGGTACGGCGGAAGAGTTGGAGAAGGACACGGACCTGATGGTCTTCCT
GGCCAAGTTTATCATGCCCTTACGGTTCCGGTACGAAGGGCCCTCTGATT
CAGTGCAAGGCATCGAGGCTCTTAATGCGTTTTGGATTATCACCAATCAA
TTTCTCGCCCCCAGCGCCGAGACGCAGCACGCTTTTCAATGGACGGGCCG
GGCGCGAGGGACGGACTCTTCAACCTCACCGACCTCCAAAGTACGCCACT
TTTTCTAAGCACCCCGCACTACATGGGCTATCCGCAGCTCAAATCGTTGG
AGTGTTTGAGTGTCATTGCCTACGATCCAGTCGGCGAGCAAGACGCTGCC
ATGGGGAGTCATCTGGATATAGATCCCTACACGGGAAGGACAATGTCAGC
AGCGGTTCGTATGCAGCTGTCAACCTCAACAGCAGGTGGGAACAAGGTCT
ATGATGTGTTCCATGACAAAGCTTACGCTGCTGAGGTTATTCCACTACTG
TGGATGACGCAGCAGGCAGAAGTGGGGCCAGCGGACGCGGTATTATTCAA
GAAGCTGTGTTCTGCGCCGCTAACCGCGGTTCGAGCAATTCCAAAGGTAT
ACCTTGCTGGTAGGGATTGTGTTGACGGTGTTGGGTCTGGTAATGGTAGT
GGCCGGCTGTTTCTTTGCTCGCAGAAAGCGAAGTGAAGAGAAGACTGCAG
ATTCTCGGGGATGCACCATTAATATTCTTTGAGTTTGACACCACACCAAC
GCAACGAAGGCCATAAAATGAATAATACAAGAGAGTCAATTTGTGAAATC
GATTCCCATTTTAGTGCTGTGCAAGTGCTTGTGAAGATGTGTGTGGGCGC
AAGTGTGAGCAGAATGCAAAAGAGGGACACTTCCAGGGAAAAACACGAAA
GAGATTTGCTTTTAAGTTTGAGACGCGACCAAATAATTGAATCGTAAATT
ATTTTTGTAATTATTGTAATTTGGTTGTGACAGGTAACGACTATGCCAAT
ACGAACAACTGGGAGGAACAAAGGCCGGAAGCTTCTCGCTAATTAGAAGC
AGAAATAGGACACCTTGCATGATAAACCTAAAATACAGCTTCTACGTTTT
TTTGACTCGAGAATTTGATCACGCAGCCAACGTCCATATCTTCATTATGT
TCTGGCGGTCGCCGCTTCATAGAATCTTCTCTCTAAGTTCCTCTTCCTCC
TCCACATCCTCATTCTCTTCCCCTCCTTCCATAAGGGTAGGTTGGGAAAG
TCTGTGACGCACAAGTCTACAAAAGCTGACTTGACTACTTTATCCTCTTT
CTCTCTCTCGCTCCTCGTTTTGGCTTTCCACCTGCTTCTCCTCTTCCCCT
TCATCTCCCTTCTCCTCCTCCTTTCTCTTCCACGATACAAGGGTCTCTCT
CATCCAGGGCAACAATGGGAGGATGCAATCACTCTCATCCTTCTCCTTCT
CGCTCGCCAATGTCCTCTCTTCGTAGCTCCTCAATCTATTTCCAACCAAC
AACACATTCTGTAGGCAATCGGGTGACCAATTGGCCCATAAGAGATTACT
GTAAAGACGACGATGACAGCAGGGCATAAAAAAGACTGTCGGTGTGAGGG
CCCGGCGTTTGCCGTGTTCGTTGTGAGGGAGGACGTGCCACCCGAGAAGG
GTCAGGAGATGAGTGTCCAAGCCATCAAACAAGGGG
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Coding sequence (CDS) from alignment at scaffold_141:30539..32424+

>mRNA_12285 ID=mRNA_12285|Name=jgi.p|Nanoce1779_2|617625|organism=Nannochloropsis oceanica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_141:30539..32424+ (Nannochloropsis oceanica)
ATGCAGGCAACGACGGAGCATGTGGGAGAGGGACTCTTGGCCGGACTGGA
GCAAACGCTCAGCACACTGGCCTTCGAGGATGGTACGGCGGAAGAGTTGG
AGAAGGACACGGACCTGATGGTCTTCCTGGCCAAGTTTATCATGCCCTTA
CGGTTCCGGTACGAAGGGCCCTCTGATTCACGCCGAGACGCAGCACGCTT
TTCAATGGACGGGCCGGGCGCGAGGGACGGACTCTTCAACCTCACCGACC
TCCAAAGTACGCCACTTTTTCTAAGCACCCCGCACTACATGGGCTATCCG
CAGCTCAAATCGTTGGAGTGTTTGAGTGTCATTGCCTACGATCCAGTCGG
CGAGCAAGACGCTGCCATGGGGAGTCATCTGGATATAGATCCCTACACGG
GAAGGACAATGTCAGCAGCGGTTCGTATGCAGCTGTCAACCTCAACAGCA
GGTGGGAACAAGGTCTATGATGTGTTCCATGACAAAGCTTACGCTGCTGA
GGTTATTCCACTACTGTGGATGACGCAGCAGGCAGAAGTGGGGCCAGCGG
ACGCGGTATTATTCAAGAAGCTGTATACCTTGCTGGTAGGGATTGTGTTG
ACGGTGTTGGGTCTGGTAATGGTAGTGGCCGGCTGTTTCTTTGCTCGCAG
AAAGCGAAGTGAAGAGAAGACTGCAGATTCTCGGGGATGCACCATTAATA
TTCTTTGAATGCAGGCAACGACGGAGCATGTGGGAGAGGGACTCTTGGCC
GGACTGGAGCAAACGCTCAGCACACTGGCCTTCGAGGATGGTACGGCGGA
AGAGTTGGAGAAGGACACGGACCTGATGGTCTTCCTGGCCAAGTTTATCA
TGCCCTTACGGTTCCGGTACGAAGGGCCCTCTGATTCACGCCGAGACGCA
GCACGCTTTTCAATGGACGGGCCGGGCGCGAGGGACGGACTCTTCAACCT
CACCGACCTCCAAAGTACGCCACTTTTTCTAAGCACCCCGCACTACATGG
GCTATCCGCAGCTCAAATCGTTGGAGTGTTTGAGTGTCATTGCCTACGAT
CCAGTCGGCGAGCAAGACGCTGCCATGGGGAGTCATCTGGATATAGATCC
CTACACGGGAAGGACAATGTCAGCAGCGGTTCGTATGCAGCTGTCAACCT
CAACAGCAGGTGGGAACAAGGTCTATGATGTGTTCCATGACAAAGCTTAC
GCTGCTGAGGTTATTCCACTACTGTGGATGACGCAGCAGGCAGAAGTGGG
GCCAGCGGACGCGGTATTATTCAAGAAGCTGTATACCTTGCTGGTAGGGA
TTGTGTTGACGGTGTTGGGTCTGGTAATGGTAGTGGCCGGCTGTTTCTTT
GCTCGCAGAAAGCGAAGTGAAGAGAAGACTGCAGATTCTCGGGGATGCAC
CATTAATATTCTTTGAATGCAGGCAACGACGGAGCATGTGGGAGAGGGAC
TCTTGGCCGGACTGGAGCAAACGCTCAGCACACTGGCCTTCGAGGATGGT
ACGGCGGAAGAGTTGGAGAAGGACACGGACCTGATGGTCTTCCTGGCCAA
GTTTATCATGCCCTTACGGTTCCGGTACGAAGGGCCCTCTGATTCACGCC
GAGACGCAGCACGCTTTTCAATGGACGGGCCGGGCGCGAGGGACGGACTC
TTCAACCTCACCGACCTCCAAAGTACGCCACTTTTTCTAAGCACCCCGCA
CTACATGGGCTATCCGCAGCTCAAATCGTTGGAGTGTTTGAGTGTCATTG
CCTACGATCCAGTCGGCGAGCAAGACGCTGCCATGGGGAGTCATCTGGAT
ATAGATCCCTACACGGGAAGGACAATGTCAGCAGCGGTTCGTATGCAGCT
GTCAACCTCAACAGCAGGTGGGAACAAGGTCTATGATGTGTTCCATGACA
AAGCTTACGCTGCTGAGGTTATTCCACTACTGTGGATGACGCAGCAGGCA
GAAGTGGGGCCAGCGGACGCGGTATTATTCAAGAAGCTGTATACCTTGCT
GGTAGGGATTGTGTTGACGGTGTTGGGTCTGGTAATGGTAGTGGCCGGCT
GTTTCTTTGCTCGCAGAAAGCGAAGTGAAGAGAAGACTGCAGATTCTCGG
GGATGCACCATTAATATTCTTTGA
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Synonyms
Publications