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Properties
Property Name | Value |
Description | Unknown protein |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:732057..734923 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
Term | Definition |
IPR013246 | SAGA_su_Sgf11 |
Vocabulary: Cellular Component
Term | Definition |
GO:0005634 | nucleus |
Homology
BLAST of NO12G02580 vs. NCBI_GenBank
Match: XP_005854739.1 (hypothetical protein NGA_2025900, partial [Nannochloropsis gaditana CCMP526] >EKU21621.1 hypothetical protein NGA_2025900, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 105.5 bits (262), Expect = 7.200e-19 Identity = 81/147 (55.10%), Postives = 100/147 (68.03%), Query Frame = 0
Query: 142 SRPASNGVNVDVYGHIPPKEPKFNFQCSACGRSVSVLRYAPHLDKCI-NNKAGRNSSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPELGSYVFASDMVKGGAMLLRMRVDTDGRAVRVLPPAEI 288
++ ++NG + D+YG +PPKEP++NFQCSAC RSVSVLRYAPHLDKC+ NK+GR++ SQ XXXXXXXXXXXXXXXXXXXXXX P++ SY+F G ++LR+RVD DGRAVRVL P EI
Sbjct: 1 AKASANGNSFDIYGRVPPKEPRYNFQCSACARSVSVLRYAPHLDKCLGKNKSGRSAGSQ----RKSANGISGYGNGTDSKDPXXXXXXXXXXXXXXXXXXXXXXFNSHPDVASYIFPV-----GPIVLRLRVDADGRAVRVLSPHEI 138
BLAST of NO12G02580 vs. NCBI_GenBank
Match: CBJ32378.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 73.2 bits (178), Expect = 4.000e-9 Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = 0
Query: 78 DPPATELETDILNALLDL-LCKEVCHQVHRAVKTGLMTRAEILAVLPSDTSPFPSSSSPSTNGILSRPASNGVNVDVYGHIPPKEPKFNFQCSACGRSVSVLRYAPHLDKC-INNKAGRNSSS 199
DP E D + + +L LC++V ++HR + TG++T+ + A +P P S + DVYG IPP+EP + C +C R+V RYAPHLDKC + + GR S S
Sbjct: 18 DPIDLRQEADTIYSAFELSLCRDVVFELHRELHTGVLTKERLWA---EHNNPPPKSVAGG---------------DVYGRIPPREPSTSITCPSCNRAVGAARYAPHLDKCALGSSRGRASRS 122
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02580 ID=NO12G02580|Name=NO12G02580|organism=Nannochloropsis oceanica|type=gene|length=2867bp ATGGCGATGGCAGTGCAGCGACAACGACAGCGCCAAAAAACTAAGCAGCG GCAGGACGACGAGGTGGTGAAGAAGGAGGACAAGGAGGGTGACGTCAACA TAGCCAGCGTGGTCGTGTCGGCGCCCGTGCCTCAAAGCATTCAATTTCTT GAATCCGCAACAGAGGATGGCAACATCGATAAAGAGCGGCCGCAGCAGCA ACAAGGGCAACATGCCGCCGCCACAGATCTGGATCCCCCCGCCACAGAGg taagtccttccttgaaatgcgtgccatctatcacgacgagcactcgcatg tatgtgcatcagttctggctcatcttaaccaccgtgtctcccctctctca caccaccctctattccctcctttcgatccgcatgcctgctgatcgattgt ttaaatatgcgcctgtcgatgtgcagacatccaactgcgcatcaacccat ctttatccaattctaattttctgttcacaaccctctcctcccctcaaaat gaccccatacctcctctctcacaccattcattctccacacagCTGGAGAC TGACATCCTCAACGCTCTCCTCGACCTGCTCTGCAAAGAAGTATGCCACC AAGTCCATCGCGCTGTCAAAACAGGCCTCATGACCCGCGCCGAGATCCTT GCCGTCCTCCCTTCCGACACGTCCCCCTTCCCCTCCTCCTCCTCCCCTTC TACCAACGGCATTCTCTCGCGTCCTGCAAGTAACGGTGTTAATGTTGATG TCTACGGCCACATCCCTCCAAAAGAACCAAAATTTAACTTTCAATGCAGT GCCTGTGGCCGCAGCGTGAGTGTCCTACGCTATGCCCCGCATCTCGACAA ATGCATCAACAACAAGGCCGGGAGGAATAGCAGTTCGCAGCGCAAGCAAG GATTGGGAGGATCGGGCTCGGGGAGTGGGATGGATGTTGCGGGCAGCGTC GACCCTGTTGCGGCTGCTATTGCTGCGTCGGCAGCATCGGCGCTGCTTCT AAAGAAGAAGAAGCGGAAGCGCAACCAGAACACGCACCCCGAGCTGGGTT CGTATGTGTTTGCGAGCGATATGGTTAAGGGGGGGGCGATGTTGTTGCGC ATGCGTGTAGATACAGACGGAAGGGCGGTCCGGGTCCTCCCTCCCGCTGA AATAGATGCAGGGATTATGCCGCCTCCTCAACTGCTGCTGCAGCAGCAGC AGCAGCCACGATCATTGGGGAAGAATGCGACGCAGCAAAAACAACAGAGA CAGGCCCCCCGGCTGCCTATGACCCTTACCGATGATGGTGATGGAACTGC TGCTGCTGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCCTTCCTCCGA TGCAGCAACAGCAGCAGCAAGCTGCCCTCCGTCTTCAGCAACAACAACAG CCGCAACTCCAACAGCGTCAGCATCAGCAGCATCAGTCAGGGCCGGGGCT ACAGTATGCCCGTTGGAGTCCCATAAATCCTTCGTTTCCCGTCCCCTCAT CCTCCCCTTCCTCTTCTTTCGCCCTTTCTACACATCAAGGATACCCTCCC CTCCCGCCGAGTACCTCTCCTTCTTCTTTGTACTCAACTTCGTCTTTCGT TCACACAGCATCATCTCCGCCTCTTTCTGTGGGGGGAGAAAGAGGAGGAG GAGGAGGAAGAGATGGAAGAAGAGGAGGAGGAAGAGGAGGAGGAAAGATT GGACAGGTATGGCCAGCAGAAAACCAACAGCAGCAGCAGCTTCACCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAAC AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA ACAGCAGCAGCAGCAGCAATACCTCACCGCTCAACAGCAGGGGCAATTGC AACAGCTTCAGCAGCAGCAGCAGCAGAAGCAGCAGAAGCAGCAGAAGCAG CACCAGCACCAGCATCAGCAGCACCAGCACCAGCACCAGCATCAGCATCA GCACCAGCACCAGCACCAGCAGCACGAGCAGCACCACCAGCACGACCAGC AGCAGCATCAGCAGCAGCAGCAGCACCAGCACCAGCACCAGCACCAGCAC CAGCAGCAAGGACGTCTTCCGAGACAACAGCCCCAAGCTTCGCTGACCGC CGGCCCGAAAAATCTCAGCCAGCCCATCTTGGCCCAAGGGCGCAGCGGTG CAGGAGCAGGAGGCACCGTGGCCCGAAACCAGCAACTCTCGCCAACCCCA CGTCCCACGGCTATGCCCCCCCTACAGAAATTGCAGCCACCGCAGCAGCA GCAGATCATGATAGTCCAGCAGCAGCATTTGATACAGCAACAGCAATTAC AAGAGCAGCAGCAACAGGAGTTACAACAACAGCAAGGCCTCTTCCCGTCG CATGCATCTTTACCACGGCAACATCCTCCTAGACATGCTGTGCAGCGCGC CCTCCCGCCCAAACAAGGTTCTCCTTTCCCACCTTACCAGTTCCCTTCTA CTTAGTTTCGTCGCAATGGCAAGTCAATAAATAATTTAGAAATATAGTGT GATAGCTCCATAGGACCAGTCAGAGTAGGCTCCAAATATTCAAAGGCTAC AAAGCGGCAATATTCAGATAAAAGTGAGAGTGTAAACAATGCAAGGACCA GTAGACATTTAGGGAAATGAGATAGCCACAGGAAAGATGGTTGTTCTGGT GCATATTCAGAGCCCCTTTCATCAGACGCAAGATAAATGCCAGCCAACGC ACAGAAAGCTACATAGGAAACAAAATCGGCACTCACGAAAGAGGAAATGA AATCAATGCTAAGGAAA back to topprotein sequence of NO12G02580.1 >NO12G02580.1-protein ID=NO12G02580.1-protein|Name=NO12G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=754bp MAMAVQRQRQRQKTKQRQDDEVVKKEDKEGDVNIASVVVSAPVPQSIQFL ESATEDGNIDKERPQQQQGQHAAATDLDPPATELETDILNALLDLLCKEV CHQVHRAVKTGLMTRAEILAVLPSDTSPFPSSSSPSTNGILSRPASNGVN VDVYGHIPPKEPKFNFQCSACGRSVSVLRYAPHLDKCINNKAGRNSSSQR KQGLGGSGSGSGMDVAGSVDPVAAAIAASAASALLLKKKKRKRNQNTHPE LGSYVFASDMVKGGAMLLRMRVDTDGRAVRVLPPAEIDAGIMPPPQLLLQ QQQQPRSLGKNATQQKQQRQAPRLPMTLTDDGDGTAAAAAAAAAAAAAAL PPMQQQQQQAALRLQQQQQPQLQQRQHQQHQSGPGLQYARWSPINPSFPV PSSSPSSSFALSTHQGYPPLPPSTSPSSLYSTSSFVHTASSPPLSVGGER GGGGGRDGRRGGGRGGGKIGQVWPAENQQQQQLHQQQQQQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYLTAQQQG QLQQLQQQQQQKQQKQQKQHQHQHQQHQHQHQHQHQHQHQHQQHEQHHQH DQQQHQQQQQHQHQHQHQHQQQGRLPRQQPQASLTAGPKNLSQPILAQGR SGAGAGGTVARNQQLSPTPRPTAMPPLQKLQPPQQQQIMIVQQQHLIQQQ QLQEQQQQELQQQQGLFPSHASLPRQHPPRHAVQRALPPKQGSPFPPYQF PST* back to top
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